Wall clock time and date at job start Tue Mar 31 2020 21:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.08996 * 109.50590 * 330.09330 * 3 2 1 5 5 C 1.53135 * 109.50551 * 209.99859 * 3 2 1 6 6 C 1.53247 * 109.53026 * 170.27194 * 5 3 2 7 7 N 1.46579 * 108.78693 * 50.56037 * 6 5 3 8 8 C 1.34863 * 127.49965 * 162.81771 * 7 6 5 9 9 C 1.36569 * 106.78818 * 180.08762 * 8 7 6 10 10 C 1.47329 * 126.21132 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99913 * 0.05340 * 10 9 8 12 12 N 1.34780 * 119.99755 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99707 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46793 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46813 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47455 * 305.00185 * 15 14 13 17 17 C 1.53002 * 109.47040 * 185.00281 * 15 14 13 18 18 N 1.46503 * 109.46937 * 65.00628 * 15 14 13 19 19 C 1.36943 * 119.99701 * 205.00199 * 18 15 14 20 20 H 1.07996 * 120.00226 * 359.97438 * 19 18 15 21 21 C 1.38812 * 119.99726 * 180.02562 * 19 18 15 22 22 N 1.31620 * 119.99828 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99863 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47318 * 59.99710 * 23 21 19 25 25 H 1.48500 * 109.47086 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47069 * 299.99563 * 23 21 19 27 27 N 1.35892 * 107.57709 * 359.97438 * 9 8 7 28 28 C 1.29788 * 108.85032 * 359.97438 * 27 9 8 29 29 C 1.51098 * 127.17381 * 180.11742 * 28 27 9 30 30 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 31 31 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 33 33 H 1.08997 * 109.46560 * 290.29388 * 5 3 2 34 34 H 1.09007 * 109.45922 * 50.27037 * 5 3 2 35 35 H 1.09003 * 109.57834 * 170.34805 * 6 5 3 36 36 H 1.08996 * 109.58152 * 290.76279 * 6 5 3 37 37 H 1.08000 * 126.60477 * 0.05170 * 8 7 6 38 38 H 0.97001 * 119.99698 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47045 * 299.99560 * 13 12 10 40 40 H 1.08996 * 109.47284 * 59.99883 * 13 12 10 41 41 H 1.08992 * 109.47714 * 299.99974 * 14 13 12 42 42 H 1.09007 * 109.47144 * 60.00555 * 14 13 12 43 43 H 1.08999 * 109.46918 * 300.00232 * 17 15 14 44 44 H 1.08998 * 109.47103 * 60.00405 * 17 15 14 45 45 H 1.09001 * 109.47292 * 180.02562 * 17 15 14 46 46 H 0.96995 * 119.99797 * 24.99632 * 18 15 14 47 47 H 0.97002 * 119.99667 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.72098 * 44.29902 * 29 28 27 49 49 H 1.09004 * 109.71808 * 283.64448 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 2.0002 -0.5123 5 6 3.3602 1.2642 -0.7217 6 6 3.8700 2.6933 -0.9369 7 7 3.8106 3.4128 0.3388 8 6 4.4445 4.5572 0.6663 9 6 4.0931 4.8485 1.9534 10 6 4.5455 6.0109 2.7374 11 8 5.3042 6.8213 2.2406 12 7 4.1180 6.1766 4.0048 13 6 4.5674 7.3328 4.7841 14 6 3.9397 7.2830 6.1785 15 6 4.4095 8.4902 6.9927 16 1 5.4991 8.5169 7.0072 17 6 3.8830 8.3758 8.4247 18 7 3.8990 9.7199 6.3815 19 6 4.5554 10.9057 6.5779 20 1 5.4491 10.9344 7.1835 21 6 4.0714 12.0709 5.9992 22 7 2.9819 12.0360 5.2616 23 14 4.9663 13.6884 6.2676 24 1 6.3531 13.5791 5.7480 25 1 4.2528 14.7741 5.5482 26 1 5.0046 13.9980 7.7195 27 7 3.2503 3.8714 2.3798 28 6 3.0801 3.0157 1.4190 29 6 2.2234 1.7713 1.4457 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.0782 0.7096 -0.1176 34 1 3.2410 0.7722 -1.6871 35 1 4.9001 2.6640 -1.2922 36 1 3.2424 3.1984 -1.6710 37 1 5.1037 5.1322 0.0328 38 1 3.5123 5.5306 4.4006 39 1 5.6536 7.3109 4.8733 40 1 4.2626 8.2506 4.2814 41 1 2.8537 7.3051 6.0891 42 1 4.2443 6.3652 6.6816 43 1 2.7935 8.3491 8.4101 44 1 4.2629 7.4609 8.8794 45 1 4.2174 9.2360 9.0046 46 1 3.0962 9.6942 5.8378 47 1 2.6435 12.8504 4.8575 48 1 1.2612 1.9971 1.9053 49 1 2.7282 0.9894 2.0131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713410852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:23 Heat of formation + Delta-G solvation = -20.204485 kcal Electronic energy + Delta-G solvation = -28385.874683 eV Core-core repulsion = 24348.952000 eV Total energy + Delta-G solvation = -4036.922683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.69490 -39.31570 -38.77773 -36.45600 -35.83563 -34.19289 -33.26793 -32.14978 -30.55622 -29.13881 -28.78469 -27.98880 -27.10035 -24.89314 -23.91738 -23.25331 -22.55997 -21.80372 -20.23078 -19.67600 -19.43841 -17.84110 -17.33426 -17.10808 -16.56615 -16.24875 -15.86002 -15.46770 -15.45166 -15.13722 -14.63396 -14.31524 -14.07651 -14.03177 -13.84543 -13.76719 -13.37272 -13.35420 -13.04277 -12.85974 -12.37754 -12.32320 -12.09766 -11.94270 -11.89941 -11.48252 -11.44369 -10.95113 -10.82293 -10.65101 -10.55619 -10.49688 -10.29842 -10.20703 -9.99659 -9.97214 -9.66699 -9.54512 -8.83122 -8.76084 -8.48698 -6.86030 -5.66522 -2.94815 1.49592 2.23599 2.24623 2.91571 3.51456 3.52103 3.55625 3.56551 3.70042 3.78922 3.95488 3.97261 4.31055 4.45277 4.52422 4.57453 4.68335 4.72252 4.79238 4.83810 5.01934 5.07357 5.11900 5.17071 5.26901 5.36255 5.41383 5.48146 5.53390 5.66188 5.80519 5.82076 5.99671 6.20139 6.26405 6.29652 6.46855 6.49028 6.51384 6.61730 6.70645 6.81693 6.88956 6.96884 7.16191 7.55386 7.79415 7.95288 8.51952 8.57242 9.63003 10.20774 10.55556 11.56127 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.001928 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.130626 B =14517.826724 C =15066.298336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.087 3.913 4 H 0.071 0.929 5 C -0.133 4.133 6 C 0.105 3.895 7 N -0.458 5.458 8 C 0.037 3.963 9 C -0.055 4.055 10 C 0.597 3.403 11 O -0.543 6.543 12 N -0.713 5.713 13 C 0.123 3.877 14 C -0.132 4.132 15 C 0.174 3.826 16 H 0.049 0.951 17 C -0.163 4.163 18 N -0.723 5.723 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.287 1.287 27 N -0.453 5.453 28 C 0.208 3.792 29 C -0.053 4.053 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.191 0.809 38 H 0.404 0.596 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.035 0.965 45 H 0.053 0.947 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.098 0.902 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 -29.078 -14.114 32.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.296 6.296 3 C 0.028 3.972 4 H 0.089 0.911 5 C -0.171 4.171 6 C -0.017 4.017 7 N -0.141 5.141 8 C -0.102 4.102 9 C -0.184 4.184 10 C 0.383 3.617 11 O -0.421 6.421 12 N -0.363 5.363 13 C 0.000 4.000 14 C -0.171 4.171 15 C 0.064 3.936 16 H 0.067 0.933 17 C -0.223 4.223 18 N -0.365 5.365 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.214 1.214 27 N -0.172 5.172 28 C -0.055 4.055 29 C -0.092 4.092 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.208 0.792 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.116 0.884 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.975 -28.573 -13.752 31.850 hybrid contribution 0.009 0.984 -0.612 1.159 sum -2.966 -27.589 -14.364 31.246 Atomic orbital electron populations 1.22883 0.80314 1.03231 1.00473 1.87930 1.20281 1.26452 1.94979 1.22134 0.94885 0.85572 0.94631 0.91086 1.21950 0.96623 0.95185 1.03304 1.22062 1.04157 0.92005 0.83446 1.45342 1.35801 1.19681 1.13288 1.22467 1.00741 0.89315 0.97649 1.20753 1.04718 0.98864 0.94095 1.16854 0.80357 0.83140 0.81383 1.90823 1.36394 1.44154 1.70682 1.45897 1.49337 1.27863 1.13220 1.21465 0.99012 0.88272 0.91253 1.22051 1.01010 0.99343 0.94661 1.20160 0.96958 0.85927 0.90586 0.93291 1.22420 1.00850 0.99687 0.99351 1.42451 1.31717 1.02575 1.59768 1.19186 1.06318 0.85743 1.25465 0.91273 1.24727 0.97999 0.97832 1.00491 1.69653 1.23486 1.27378 1.37636 0.86288 0.78898 0.83769 0.77356 1.21299 1.21821 1.21417 1.70353 1.16296 1.02717 1.27879 1.23216 0.99586 0.99211 0.83516 1.20681 0.99137 0.91220 0.98169 0.93748 0.89196 0.93471 0.89519 0.88141 0.87996 0.89039 0.79247 0.76188 0.91816 0.89710 0.91583 0.91907 0.93538 0.94572 0.92787 0.78271 0.93584 0.88378 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.82 101.05 1.09 1.20 16 2 O -0.38 -2.28 10.35 -35.23 -0.36 -2.65 16 3 C 0.09 0.46 2.63 -26.46 -0.07 0.39 16 4 H 0.07 0.34 7.76 -51.93 -0.40 -0.06 16 5 C -0.13 -0.53 5.59 -26.53 -0.15 -0.68 16 6 C 0.11 0.46 6.96 -3.87 -0.03 0.44 16 7 N -0.46 -4.08 3.11 -113.42 -0.35 -4.43 16 8 C 0.04 0.43 11.32 -16.82 -0.19 0.24 16 9 C -0.06 -0.81 6.98 -82.97 -0.58 -1.39 16 10 C 0.60 10.60 7.81 -12.56 -0.10 10.50 16 11 O -0.54 -11.42 16.88 5.26 0.09 -11.33 16 12 N -0.71 -11.79 5.55 -61.41 -0.34 -12.14 16 13 C 0.12 2.26 5.56 -4.04 -0.02 2.24 16 14 C -0.13 -2.22 4.87 -26.73 -0.13 -2.35 16 15 C 0.17 3.51 2.89 -67.93 -0.20 3.31 16 16 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 17 C -0.16 -2.99 9.49 37.16 0.35 -2.63 16 18 N -0.72 -18.36 4.57 -53.42 -0.24 -18.61 16 19 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 23 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 N -0.45 -6.14 11.00 -7.01 -0.08 -6.21 16 28 C 0.21 2.16 7.64 -154.64 -1.18 0.98 16 29 C -0.05 -0.37 5.96 -27.49 -0.16 -0.54 16 30 H 0.04 0.14 8.09 -51.93 -0.42 -0.28 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.09 0.40 8.11 -51.93 -0.42 -0.02 16 34 H 0.10 0.24 8.14 -51.92 -0.42 -0.18 16 35 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.40 5.88 8.18 -40.82 -0.33 5.55 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.89 7.75 -51.93 -0.40 1.48 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.38 10.41 7.80 -40.82 -0.32 10.09 16 47 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 405.17 15.07 6.11 6.11 Total: -1.00 -36.14 405.17 -9.27 -45.41 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -8.18 Total: 9.64 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.61 Total: 4.34 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -0.29 Total: -69.61 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.28 Total: -13.98 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.14 -9.27 -45.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713410852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.209 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds