Wall clock time and date at job start Tue Mar 31 2020 21:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.08996 * 109.50590 * 330.09330 * 3 2 1 5 5 C 1.53135 * 109.50551 * 209.99859 * 3 2 1 6 6 C 1.53247 * 109.53026 * 170.27194 * 5 3 2 7 7 N 1.46579 * 108.78693 * 50.56037 * 6 5 3 8 8 C 1.34863 * 127.49965 * 162.81771 * 7 6 5 9 9 C 1.36569 * 106.78818 * 180.08762 * 8 7 6 10 10 C 1.47329 * 126.21132 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99913 * 0.05340 * 10 9 8 12 12 N 1.34780 * 119.99755 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99707 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46793 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46813 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47455 * 305.00185 * 15 14 13 17 17 C 1.53002 * 109.47040 * 185.00281 * 15 14 13 18 18 N 1.46503 * 109.46937 * 65.00628 * 15 14 13 19 19 C 1.36943 * 119.99701 * 205.00199 * 18 15 14 20 20 H 1.07996 * 120.00226 * 359.97438 * 19 18 15 21 21 C 1.38812 * 119.99726 * 180.02562 * 19 18 15 22 22 N 1.31620 * 119.99828 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99863 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47318 * 59.99710 * 23 21 19 25 25 H 1.48500 * 109.47086 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47069 * 299.99563 * 23 21 19 27 27 N 1.35892 * 107.57709 * 359.97438 * 9 8 7 28 28 C 1.29788 * 108.85032 * 359.97438 * 27 9 8 29 29 C 1.51098 * 127.17381 * 180.11742 * 28 27 9 30 30 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 31 31 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 33 33 H 1.08997 * 109.46560 * 290.29388 * 5 3 2 34 34 H 1.09007 * 109.45922 * 50.27037 * 5 3 2 35 35 H 1.09003 * 109.57834 * 170.34805 * 6 5 3 36 36 H 1.08996 * 109.58152 * 290.76279 * 6 5 3 37 37 H 1.08000 * 126.60477 * 0.05170 * 8 7 6 38 38 H 0.97001 * 119.99698 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47045 * 299.99560 * 13 12 10 40 40 H 1.08996 * 109.47284 * 59.99883 * 13 12 10 41 41 H 1.08992 * 109.47714 * 299.99974 * 14 13 12 42 42 H 1.09007 * 109.47144 * 60.00555 * 14 13 12 43 43 H 1.08999 * 109.46918 * 300.00232 * 17 15 14 44 44 H 1.08998 * 109.47103 * 60.00405 * 17 15 14 45 45 H 1.09001 * 109.47292 * 180.02562 * 17 15 14 46 46 H 0.96995 * 119.99797 * 24.99632 * 18 15 14 47 47 H 0.97002 * 119.99667 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.72098 * 44.29902 * 29 28 27 49 49 H 1.09004 * 109.71808 * 283.64448 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 2.0002 -0.5123 5 6 3.3602 1.2642 -0.7217 6 6 3.8700 2.6933 -0.9369 7 7 3.8106 3.4128 0.3388 8 6 4.4445 4.5572 0.6663 9 6 4.0931 4.8485 1.9534 10 6 4.5455 6.0109 2.7374 11 8 5.3042 6.8213 2.2406 12 7 4.1180 6.1766 4.0048 13 6 4.5674 7.3328 4.7841 14 6 3.9397 7.2830 6.1785 15 6 4.4095 8.4902 6.9927 16 1 5.4991 8.5169 7.0072 17 6 3.8830 8.3758 8.4247 18 7 3.8990 9.7199 6.3815 19 6 4.5554 10.9057 6.5779 20 1 5.4491 10.9344 7.1835 21 6 4.0714 12.0709 5.9992 22 7 2.9819 12.0360 5.2616 23 14 4.9663 13.6884 6.2676 24 1 6.3531 13.5791 5.7480 25 1 4.2528 14.7741 5.5482 26 1 5.0046 13.9980 7.7195 27 7 3.2503 3.8714 2.3798 28 6 3.0801 3.0157 1.4190 29 6 2.2234 1.7713 1.4457 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.0782 0.7096 -0.1176 34 1 3.2410 0.7722 -1.6871 35 1 4.9001 2.6640 -1.2922 36 1 3.2424 3.1984 -1.6710 37 1 5.1037 5.1322 0.0328 38 1 3.5123 5.5306 4.4006 39 1 5.6536 7.3109 4.8733 40 1 4.2626 8.2506 4.2814 41 1 2.8537 7.3051 6.0891 42 1 4.2443 6.3652 6.6816 43 1 2.7935 8.3491 8.4101 44 1 4.2629 7.4609 8.8794 45 1 4.2174 9.2360 9.0046 46 1 3.0962 9.6942 5.8378 47 1 2.6435 12.8504 4.8575 48 1 1.2612 1.9971 1.9053 49 1 2.7282 0.9894 2.0131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713410852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:23 Heat of formation + Delta-G solvation = -46.199123 kcal Electronic energy + Delta-G solvation = -28387.001895 eV Core-core repulsion = 24348.952000 eV Total energy + Delta-G solvation = -4038.049895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.51449 -40.49125 -39.42228 -38.11704 -36.41990 -35.80995 -34.14433 -33.90357 -31.52762 -30.75164 -29.64425 -29.34524 -27.55344 -25.98352 -25.40760 -24.48895 -23.18983 -23.04125 -21.69916 -20.89154 -20.26596 -19.28151 -18.70404 -17.80772 -17.37425 -17.06228 -16.89069 -16.75996 -16.33671 -16.20687 -15.94266 -15.58063 -15.34066 -14.97747 -14.87746 -14.84376 -14.48457 -14.32187 -14.23296 -14.07788 -13.56743 -13.40448 -13.23677 -12.89287 -12.77907 -12.62330 -12.48258 -12.31787 -12.25017 -12.23246 -12.12219 -11.87136 -11.68507 -11.59087 -11.43309 -11.12069 -10.91205 -10.77037 -10.65667 -10.14021 -9.52377 -8.96626 -7.90516 -5.17750 0.50878 1.28410 1.46258 1.50116 1.55433 1.55634 2.27132 2.46511 2.53425 2.58564 3.11880 3.42924 3.43954 3.55974 3.82303 3.89400 3.91805 3.99162 4.03950 4.09465 4.21535 4.23826 4.35513 4.38807 4.44582 4.50141 4.57356 4.67179 4.69405 4.75337 4.79547 4.87508 4.89331 4.93818 4.95681 5.02170 5.07714 5.11155 5.21261 5.36834 5.39594 5.45838 5.55082 5.61931 5.96854 6.15183 6.31840 6.47963 6.81661 7.23540 7.37450 8.15174 8.37265 9.32963 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.001928 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.130626 B =14517.826724 C =15066.298336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.391 6.391 3 C 0.089 3.911 4 H 0.078 0.922 5 C -0.128 4.128 6 C 0.098 3.902 7 N -0.448 5.448 8 C 0.052 3.948 9 C -0.096 4.096 10 C 0.593 3.407 11 O -0.588 6.588 12 N -0.705 5.705 13 C 0.135 3.865 14 C -0.116 4.116 15 C 0.165 3.835 16 H 0.045 0.955 17 C -0.152 4.152 18 N -0.735 5.735 19 C -0.233 4.233 20 H 0.075 0.925 21 C -0.081 4.081 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.281 1.281 25 H -0.298 1.298 26 H -0.276 1.276 27 N -0.482 5.482 28 C 0.213 3.787 29 C -0.051 4.051 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.206 0.794 38 H 0.414 0.586 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.371 0.629 47 H 0.248 0.752 48 H 0.100 0.900 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 -31.610 -14.713 35.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C 0.030 3.970 4 H 0.096 0.904 5 C -0.165 4.165 6 C -0.022 4.022 7 N -0.130 5.130 8 C -0.090 4.090 9 C -0.224 4.224 10 C 0.380 3.620 11 O -0.469 6.469 12 N -0.355 5.355 13 C 0.011 3.989 14 C -0.154 4.154 15 C 0.057 3.943 16 H 0.063 0.937 17 C -0.212 4.212 18 N -0.375 5.375 19 C -0.365 4.365 20 H 0.093 0.907 21 C -0.273 4.273 22 N -0.622 5.622 23 Si 0.799 3.201 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.202 1.202 27 N -0.202 5.202 28 C -0.052 4.052 29 C -0.090 4.090 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.223 0.777 38 H 0.251 0.749 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.203 0.797 47 H 0.057 0.943 48 H 0.118 0.882 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.860 -31.186 -14.318 34.435 hybrid contribution -0.038 1.586 -0.466 1.653 sum -2.898 -29.600 -14.783 33.213 Atomic orbital electron populations 1.23034 0.79410 1.04082 1.00991 1.87918 1.21370 1.26691 1.94957 1.22139 0.95849 0.85580 0.93400 0.90358 1.21953 0.95530 0.94815 1.04207 1.22504 1.06190 0.91906 0.81565 1.45616 1.34200 1.18715 1.14447 1.22679 0.99912 0.89762 0.96627 1.20428 1.07435 0.99184 0.95340 1.17349 0.79546 0.83577 0.81504 1.90779 1.38497 1.46033 1.71561 1.45757 1.49306 1.27322 1.13080 1.21153 0.98523 0.87226 0.92016 1.21909 1.00880 0.99390 0.93207 1.20448 0.96735 0.85125 0.92034 0.93699 1.22253 1.00685 1.00855 0.97419 1.42649 1.31206 1.03654 1.60036 1.19587 1.06052 0.86856 1.24049 0.90693 1.25541 0.99220 1.01300 1.01255 1.69821 1.25319 1.27684 1.39388 0.85254 0.77643 0.79589 0.77565 1.20776 1.22393 1.20229 1.70254 1.16990 1.03344 1.29618 1.23764 0.99051 0.99167 0.83200 1.20814 0.98567 0.89756 0.99885 0.92813 0.88289 0.93385 0.90046 0.85883 0.85792 0.87004 0.77746 0.74890 0.92675 0.94267 0.91334 0.88027 0.93725 0.90650 0.94605 0.79734 0.94304 0.88167 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.82 113.37 1.23 1.35 16 2 O -0.39 -3.80 10.35 -148.98 -1.54 -5.35 16 3 C 0.09 0.72 2.63 30.77 0.08 0.80 16 4 H 0.08 0.53 7.76 -2.39 -0.02 0.52 16 5 C -0.13 -0.61 5.59 30.72 0.17 -0.44 16 6 C 0.10 0.55 6.96 86.45 0.60 1.15 16 7 N -0.45 -7.13 3.11 -512.76 -1.60 -8.72 16 8 C 0.05 1.15 11.32 83.84 0.95 2.10 16 9 C -0.10 -2.86 6.98 40.52 0.28 -2.58 16 10 C 0.59 21.84 7.81 86.63 0.68 22.52 16 11 O -0.59 -25.97 16.88 -4.09 -0.07 -26.04 16 12 N -0.70 -23.91 5.55 -466.46 -2.59 -26.50 16 13 C 0.13 5.11 5.56 86.38 0.48 5.59 16 14 C -0.12 -3.78 4.87 30.59 0.15 -3.64 16 15 C 0.17 6.57 2.89 44.99 0.13 6.70 16 16 H 0.04 1.83 8.08 -2.39 -0.02 1.81 16 17 C -0.15 -5.31 9.49 71.98 0.68 -4.63 16 18 N -0.73 -38.09 4.57 -322.93 -1.48 -39.57 16 19 C -0.23 -13.41 9.93 84.03 0.83 -12.58 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 22 N -0.97 -62.09 13.06 21.65 0.28 -61.81 16 23 Si 0.97 48.37 29.55 68.60 2.03 50.39 16 24 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 27 N -0.48 -12.95 11.00 -176.08 -1.94 -14.88 16 28 C 0.21 4.15 7.64 138.05 1.05 5.20 16 29 C -0.05 -0.64 5.96 30.10 0.18 -0.46 16 30 H 0.05 0.21 8.09 -2.39 -0.02 0.19 16 31 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.08 0.52 8.11 -2.39 -0.02 0.50 16 34 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 35 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.21 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.41 12.11 8.18 -92.71 -0.76 11.35 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.04 1.85 7.75 -2.39 -0.02 1.83 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 43 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.37 20.86 7.80 -92.71 -0.72 20.14 16 47 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 48 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -81.58 405.17 0.54 -81.04 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.53 Total: 34.74 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 7.97 Total: 16.69 kcal Atomic # 7 Polarization: -144.16 SS G_CDS: -7.32 Total: -151.48 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.61 Total: -31.39 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.39 kcal Total: -81.58 0.54 -81.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713410852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.844 kcal (2) G-P(sol) polarization free energy of solvation -81.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds