Wall clock time and date at job start Tue Mar 31 2020 21:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99421 * 2 1 4 4 H 1.08993 * 109.50944 * 29.90395 * 3 2 1 5 5 C 1.53132 * 109.50540 * 149.99779 * 3 2 1 6 6 C 1.53241 * 109.52722 * 189.77622 * 5 3 2 7 7 N 1.46585 * 108.78313 * 309.42681 * 6 5 3 8 8 C 1.34876 * 127.49608 * 197.20754 * 7 6 5 9 9 C 1.36566 * 106.78423 * 179.87224 * 8 7 6 10 10 C 1.47330 * 126.21217 * 180.02562 * 9 8 7 11 11 O 1.21626 * 119.99614 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00162 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00249 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47252 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46929 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.46630 * 304.99726 * 15 14 13 17 17 C 1.53003 * 109.46939 * 185.00520 * 15 14 13 18 18 N 1.46492 * 109.47210 * 65.00305 * 15 14 13 19 19 C 1.36942 * 120.00155 * 205.00268 * 18 15 14 20 20 H 1.07999 * 119.99929 * 359.97438 * 19 18 15 21 21 C 1.38805 * 120.00100 * 179.97438 * 19 18 15 22 22 N 1.31619 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00147 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46971 * 60.00107 * 23 21 19 25 25 H 1.48494 * 109.47409 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47494 * 300.00429 * 23 21 19 27 27 N 1.35895 * 107.58232 * 0.02714 * 9 8 7 28 28 C 1.29796 * 108.84536 * 0.02576 * 27 9 8 29 29 C 1.51102 * 127.17597 * 179.87516 * 28 27 9 30 30 H 1.09004 * 109.46726 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47675 * 300.00374 * 1 2 3 32 32 H 1.09006 * 109.47142 * 60.00861 * 1 2 3 33 33 H 1.09003 * 109.46412 * 69.76414 * 5 3 2 34 34 H 1.08995 * 109.45445 * 309.79171 * 5 3 2 35 35 H 1.08997 * 109.58901 * 189.63384 * 6 5 3 36 36 H 1.09002 * 109.58540 * 69.21117 * 6 5 3 37 37 H 1.08002 * 126.60899 * 359.84686 * 8 7 6 38 38 H 0.97002 * 120.00006 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47064 * 300.00577 * 13 12 10 40 40 H 1.09000 * 109.46923 * 59.99817 * 13 12 10 41 41 H 1.08992 * 109.47655 * 300.00055 * 14 13 12 42 42 H 1.09000 * 109.47467 * 60.00504 * 14 13 12 43 43 H 1.08997 * 109.47372 * 59.99623 * 17 15 14 44 44 H 1.08997 * 109.47019 * 179.97438 * 17 15 14 45 45 H 1.09001 * 109.47185 * 299.99771 * 17 15 14 46 46 H 0.97006 * 119.99959 * 24.99679 * 18 15 14 47 47 H 0.97000 * 120.00332 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.71830 * 76.30282 * 29 28 27 49 49 H 1.09005 * 109.71747 * 315.65701 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3445 2.0003 0.5122 5 6 3.3601 1.2644 0.7218 6 6 3.8692 2.6935 0.9379 7 7 3.8097 3.4137 -0.3374 8 6 4.4437 4.5584 -0.6642 9 6 4.0929 4.8499 -1.9514 10 6 4.5455 6.0126 -2.7349 11 8 5.3049 6.8224 -2.2379 12 7 4.1181 6.1790 -4.0021 13 6 4.5677 7.3355 -4.7810 14 6 3.9409 7.2859 -6.1758 15 6 4.4109 8.4934 -6.9893 16 1 4.1848 9.4095 -6.4435 17 6 3.6887 8.5120 -8.3381 18 7 5.8561 8.4006 -7.2104 19 6 6.5882 9.5353 -7.4383 20 1 6.1001 10.4985 -7.4555 21 6 7.9576 9.4474 -7.6473 22 7 8.5527 8.2736 -7.6259 23 14 8.9561 10.9950 -7.9589 24 1 8.8287 11.9090 -6.7953 25 1 10.3835 10.6331 -8.1506 26 1 8.4499 11.6736 -9.1789 27 7 3.2507 3.8727 -2.3787 28 6 3.0801 3.0167 -1.4181 29 6 2.2235 1.7722 -1.4455 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 4.0784 0.7106 0.1172 34 1 3.2410 0.7714 1.6865 35 1 4.8991 2.6647 1.2936 36 1 3.2409 3.1980 1.6720 37 1 5.1016 5.1340 -0.0298 38 1 3.5128 5.5330 -4.3986 39 1 4.2631 8.2531 -4.2777 40 1 5.6538 7.3135 -4.8701 41 1 4.2459 6.3684 -6.6788 42 1 2.8547 7.3078 -6.0870 43 1 2.6135 8.5810 -8.1736 44 1 4.0233 9.3725 -8.9175 45 1 3.9147 7.5960 -8.8839 46 1 6.2945 7.5354 -7.1953 47 1 9.5096 8.2121 -7.7723 48 1 2.7284 0.9907 -2.0136 49 1 1.2612 1.9981 -1.9049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713410853.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:28 Heat of formation + Delta-G solvation = -20.123446 kcal Electronic energy + Delta-G solvation = -28379.504665 eV Core-core repulsion = 24342.585496 eV Total energy + Delta-G solvation = -4036.919169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.69400 -39.31791 -38.78005 -36.45533 -35.83680 -34.19221 -33.26811 -32.14802 -30.55571 -29.13771 -28.78582 -27.98904 -27.10959 -24.89433 -23.91677 -23.25223 -22.56221 -21.80319 -20.23052 -19.67615 -19.43798 -17.84009 -17.33816 -17.11172 -16.56172 -16.25525 -15.85423 -15.51087 -15.42353 -15.13192 -14.64112 -14.30857 -14.06326 -14.02920 -13.87135 -13.76583 -13.37137 -13.34943 -13.04054 -12.86236 -12.37647 -12.32592 -12.10208 -11.93918 -11.90272 -11.48721 -11.44226 -10.95062 -10.82130 -10.64912 -10.55587 -10.49779 -10.30304 -10.20656 -9.99630 -9.97017 -9.66620 -9.54324 -8.82920 -8.76044 -8.48713 -6.85748 -5.66114 -2.94532 1.49543 2.23095 2.25145 2.91116 3.51692 3.51986 3.55850 3.56830 3.70189 3.78800 3.95385 3.97427 4.30290 4.44932 4.51355 4.57251 4.68577 4.72652 4.77440 4.82260 5.01971 5.07377 5.12122 5.15858 5.26871 5.36866 5.41390 5.48177 5.53405 5.66430 5.80528 5.82140 5.99743 6.20049 6.26405 6.29662 6.46876 6.48575 6.51475 6.61780 6.70630 6.81783 6.88956 6.96970 7.16220 7.55362 7.79622 7.95294 8.52269 8.57248 9.63313 10.21096 10.55812 11.56493 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.001927 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.772858 B =14526.215794 C =15318.300584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.087 3.913 4 H 0.070 0.930 5 C -0.134 4.134 6 C 0.105 3.895 7 N -0.458 5.458 8 C 0.037 3.963 9 C -0.055 4.055 10 C 0.597 3.403 11 O -0.543 6.543 12 N -0.713 5.713 13 C 0.123 3.877 14 C -0.132 4.132 15 C 0.174 3.826 16 H 0.049 0.951 17 C -0.163 4.163 18 N -0.723 5.723 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.287 1.287 27 N -0.453 5.453 28 C 0.208 3.792 29 C -0.053 4.053 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.191 0.809 38 H 0.404 0.596 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.035 0.965 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.102 0.898 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.335 -18.994 20.453 33.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.296 6.296 3 C 0.028 3.972 4 H 0.088 0.912 5 C -0.171 4.171 6 C -0.016 4.016 7 N -0.141 5.141 8 C -0.102 4.102 9 C -0.184 4.184 10 C 0.383 3.617 11 O -0.421 6.421 12 N -0.363 5.363 13 C 0.000 4.000 14 C -0.171 4.171 15 C 0.064 3.936 16 H 0.067 0.933 17 C -0.223 4.223 18 N -0.365 5.365 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.214 1.214 27 N -0.172 5.172 28 C -0.055 4.055 29 C -0.092 4.092 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.208 0.792 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.120 0.880 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.931 -18.468 20.105 32.662 hybrid contribution 0.681 0.529 0.326 0.922 sum -17.250 -17.939 20.431 32.199 Atomic orbital electron populations 1.22882 0.80362 1.03240 1.00399 1.87940 1.20241 1.26448 1.94968 1.22129 0.94870 0.85540 0.94625 0.91152 1.21953 0.96645 0.95207 1.03322 1.22059 1.04186 0.91982 0.83415 1.45346 1.35825 1.19649 1.13301 1.22469 1.00643 0.89354 0.97709 1.20753 1.04765 0.98900 0.94006 1.16854 0.80224 0.83205 0.81456 1.90825 1.36024 1.44387 1.70825 1.45894 1.49328 1.27929 1.13156 1.21464 1.01234 0.86978 0.90328 1.22050 0.99485 1.00795 0.94740 1.20157 0.85957 0.94844 0.92662 0.93306 1.22420 0.97891 1.01713 1.00285 1.42450 1.01008 1.07295 1.85755 1.19183 0.89822 0.87229 1.40513 0.91280 1.24725 0.96716 0.96550 1.03031 1.69650 1.09654 1.22026 1.56797 0.86290 0.79373 0.82697 0.77961 1.21302 1.21816 1.21422 1.70358 1.16448 1.02725 1.27719 1.23215 0.99593 0.99215 0.83497 1.20687 0.99103 0.91275 0.98167 0.89193 0.93790 0.93504 0.89451 0.88136 0.87964 0.89092 0.79245 0.76189 0.91828 0.89698 0.91571 0.91920 0.94590 0.92790 0.93526 0.78261 0.93573 0.88013 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 10.82 101.05 1.09 1.20 16 2 O -0.38 -2.27 10.36 -35.23 -0.36 -2.63 16 3 C 0.09 0.45 2.63 -26.46 -0.07 0.38 16 4 H 0.07 0.32 7.76 -51.93 -0.40 -0.09 16 5 C -0.13 -0.54 5.59 -26.54 -0.15 -0.69 16 6 C 0.11 0.47 6.96 -3.87 -0.03 0.44 16 7 N -0.46 -4.08 3.11 -113.42 -0.35 -4.44 16 8 C 0.04 0.43 11.32 -16.82 -0.19 0.24 16 9 C -0.06 -0.81 6.98 -82.97 -0.58 -1.39 16 10 C 0.60 10.60 7.81 -12.57 -0.10 10.50 16 11 O -0.54 -11.43 16.88 5.25 0.09 -11.34 16 12 N -0.71 -11.80 5.55 -61.42 -0.34 -12.14 16 13 C 0.12 2.26 5.56 -4.05 -0.02 2.24 16 14 C -0.13 -2.22 4.87 -26.73 -0.13 -2.35 16 15 C 0.17 3.51 2.89 -67.93 -0.20 3.32 16 16 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 17 C -0.16 -2.99 9.49 37.16 0.35 -2.63 16 18 N -0.72 -18.38 4.57 -53.43 -0.24 -18.63 16 19 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 23 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 N -0.45 -6.14 11.00 -7.01 -0.08 -6.21 16 28 C 0.21 2.16 7.64 -154.64 -1.18 0.98 16 29 C -0.05 -0.37 5.96 -27.49 -0.16 -0.54 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.12 8.09 -51.93 -0.42 -0.30 16 32 H 0.05 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 34 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.40 5.88 8.18 -40.82 -0.33 5.55 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.89 7.75 -51.93 -0.40 1.49 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.38 10.43 7.80 -40.82 -0.32 10.11 16 47 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 405.17 15.07 6.11 6.11 Total: -1.00 -36.21 405.17 -9.27 -45.48 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.18 Total: 9.63 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.61 Total: 4.31 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -0.29 Total: -69.67 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.28 Total: -13.97 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.21 -9.27 -45.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713410853.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.358 kcal (2) G-P(sol) polarization free energy of solvation -36.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds