Wall clock time and date at job start Tue Mar 31 2020 21:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99421 * 2 1 4 4 H 1.08993 * 109.50944 * 29.90395 * 3 2 1 5 5 C 1.53132 * 109.50540 * 149.99779 * 3 2 1 6 6 C 1.53241 * 109.52722 * 189.77622 * 5 3 2 7 7 N 1.46585 * 108.78313 * 309.42681 * 6 5 3 8 8 C 1.34876 * 127.49608 * 197.20754 * 7 6 5 9 9 C 1.36566 * 106.78423 * 179.87224 * 8 7 6 10 10 C 1.47330 * 126.21217 * 180.02562 * 9 8 7 11 11 O 1.21626 * 119.99614 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00162 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00249 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47252 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46929 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.46630 * 304.99726 * 15 14 13 17 17 C 1.53003 * 109.46939 * 185.00520 * 15 14 13 18 18 N 1.46492 * 109.47210 * 65.00305 * 15 14 13 19 19 C 1.36942 * 120.00155 * 205.00268 * 18 15 14 20 20 H 1.07999 * 119.99929 * 359.97438 * 19 18 15 21 21 C 1.38805 * 120.00100 * 179.97438 * 19 18 15 22 22 N 1.31619 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00147 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46971 * 60.00107 * 23 21 19 25 25 H 1.48494 * 109.47409 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47494 * 300.00429 * 23 21 19 27 27 N 1.35895 * 107.58232 * 0.02714 * 9 8 7 28 28 C 1.29796 * 108.84536 * 0.02576 * 27 9 8 29 29 C 1.51102 * 127.17597 * 179.87516 * 28 27 9 30 30 H 1.09004 * 109.46726 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47675 * 300.00374 * 1 2 3 32 32 H 1.09006 * 109.47142 * 60.00861 * 1 2 3 33 33 H 1.09003 * 109.46412 * 69.76414 * 5 3 2 34 34 H 1.08995 * 109.45445 * 309.79171 * 5 3 2 35 35 H 1.08997 * 109.58901 * 189.63384 * 6 5 3 36 36 H 1.09002 * 109.58540 * 69.21117 * 6 5 3 37 37 H 1.08002 * 126.60899 * 359.84686 * 8 7 6 38 38 H 0.97002 * 120.00006 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47064 * 300.00577 * 13 12 10 40 40 H 1.09000 * 109.46923 * 59.99817 * 13 12 10 41 41 H 1.08992 * 109.47655 * 300.00055 * 14 13 12 42 42 H 1.09000 * 109.47467 * 60.00504 * 14 13 12 43 43 H 1.08997 * 109.47372 * 59.99623 * 17 15 14 44 44 H 1.08997 * 109.47019 * 179.97438 * 17 15 14 45 45 H 1.09001 * 109.47185 * 299.99771 * 17 15 14 46 46 H 0.97006 * 119.99959 * 24.99679 * 18 15 14 47 47 H 0.97000 * 120.00332 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.71830 * 76.30282 * 29 28 27 49 49 H 1.09005 * 109.71747 * 315.65701 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3445 2.0003 0.5122 5 6 3.3601 1.2644 0.7218 6 6 3.8692 2.6935 0.9379 7 7 3.8097 3.4137 -0.3374 8 6 4.4437 4.5584 -0.6642 9 6 4.0929 4.8499 -1.9514 10 6 4.5455 6.0126 -2.7349 11 8 5.3049 6.8224 -2.2379 12 7 4.1181 6.1790 -4.0021 13 6 4.5677 7.3355 -4.7810 14 6 3.9409 7.2859 -6.1758 15 6 4.4109 8.4934 -6.9893 16 1 4.1848 9.4095 -6.4435 17 6 3.6887 8.5120 -8.3381 18 7 5.8561 8.4006 -7.2104 19 6 6.5882 9.5353 -7.4383 20 1 6.1001 10.4985 -7.4555 21 6 7.9576 9.4474 -7.6473 22 7 8.5527 8.2736 -7.6259 23 14 8.9561 10.9950 -7.9589 24 1 8.8287 11.9090 -6.7953 25 1 10.3835 10.6331 -8.1506 26 1 8.4499 11.6736 -9.1789 27 7 3.2507 3.8727 -2.3787 28 6 3.0801 3.0167 -1.4181 29 6 2.2235 1.7722 -1.4455 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 4.0784 0.7106 0.1172 34 1 3.2410 0.7714 1.6865 35 1 4.8991 2.6647 1.2936 36 1 3.2409 3.1980 1.6720 37 1 5.1016 5.1340 -0.0298 38 1 3.5128 5.5330 -4.3986 39 1 4.2631 8.2531 -4.2777 40 1 5.6538 7.3135 -4.8701 41 1 4.2459 6.3684 -6.6788 42 1 2.8547 7.3078 -6.0870 43 1 2.6135 8.5810 -8.1736 44 1 4.0233 9.3725 -8.9175 45 1 3.9147 7.5960 -8.8839 46 1 6.2945 7.5354 -7.1953 47 1 9.5096 8.2121 -7.7723 48 1 2.7284 0.9907 -2.0136 49 1 1.2612 1.9981 -1.9049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713410853.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:27 Heat of formation + Delta-G solvation = -46.215230 kcal Electronic energy + Delta-G solvation = -28380.636090 eV Core-core repulsion = 24342.585496 eV Total energy + Delta-G solvation = -4038.050593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.51319 -40.49047 -39.41945 -38.11660 -36.41940 -35.80973 -34.14406 -33.90167 -31.52811 -30.75191 -29.64370 -29.34359 -27.54778 -25.98343 -25.40716 -24.48884 -23.18916 -23.04034 -21.69865 -20.89079 -20.26576 -19.28014 -18.70358 -17.80926 -17.37057 -17.03769 -16.91950 -16.76004 -16.31943 -16.19368 -15.97265 -15.55774 -15.34042 -14.98221 -14.88209 -14.84355 -14.48861 -14.32139 -14.20618 -14.09155 -13.56724 -13.40570 -13.23546 -12.89259 -12.77813 -12.62144 -12.48104 -12.31541 -12.25977 -12.22205 -12.12304 -11.86577 -11.68471 -11.59051 -11.43300 -11.12022 -10.91153 -10.76918 -10.65150 -10.14026 -9.52409 -8.96591 -7.90390 -5.17740 0.50859 1.28301 1.46312 1.50111 1.55519 1.55787 2.27116 2.46630 2.53802 2.58604 3.12001 3.43031 3.43975 3.56102 3.82285 3.89301 3.91871 3.99196 4.03945 4.09635 4.21474 4.23778 4.35525 4.38987 4.44728 4.50375 4.58170 4.67188 4.69532 4.75333 4.79607 4.87395 4.89416 4.94086 4.95810 5.02252 5.07862 5.11162 5.21292 5.36814 5.39699 5.45832 5.55093 5.61982 5.96918 6.16273 6.31851 6.47974 6.81655 7.23543 7.37456 8.15277 8.37230 9.33060 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.001927 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.772858 B =14526.215794 C =15318.300584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.392 6.392 3 C 0.091 3.909 4 H 0.082 0.918 5 C -0.129 4.129 6 C 0.098 3.902 7 N -0.449 5.449 8 C 0.052 3.948 9 C -0.096 4.096 10 C 0.593 3.407 11 O -0.588 6.588 12 N -0.704 5.704 13 C 0.135 3.865 14 C -0.116 4.116 15 C 0.165 3.835 16 H 0.045 0.955 17 C -0.152 4.152 18 N -0.735 5.735 19 C -0.234 4.234 20 H 0.075 0.925 21 C -0.081 4.081 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.281 1.281 25 H -0.298 1.298 26 H -0.276 1.276 27 N -0.482 5.482 28 C 0.213 3.787 29 C -0.052 4.052 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.206 0.794 38 H 0.414 0.586 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.043 0.957 46 H 0.371 0.629 47 H 0.248 0.752 48 H 0.100 0.900 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.536 -19.958 22.028 36.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.311 6.311 3 C 0.032 3.968 4 H 0.100 0.900 5 C -0.167 4.167 6 C -0.021 4.021 7 N -0.130 5.130 8 C -0.090 4.090 9 C -0.224 4.224 10 C 0.380 3.620 11 O -0.469 6.469 12 N -0.355 5.355 13 C 0.011 3.989 14 C -0.154 4.154 15 C 0.057 3.943 16 H 0.063 0.937 17 C -0.212 4.212 18 N -0.376 5.376 19 C -0.366 4.366 20 H 0.093 0.907 21 C -0.273 4.273 22 N -0.622 5.622 23 Si 0.800 3.200 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.202 1.202 27 N -0.202 5.202 28 C -0.052 4.052 29 C -0.091 4.091 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.223 0.777 38 H 0.251 0.749 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.203 0.797 47 H 0.057 0.943 48 H 0.118 0.882 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.218 -19.454 21.683 35.460 hybrid contribution 1.228 0.727 -0.070 1.429 sum -18.990 -18.727 21.613 34.328 Atomic orbital electron populations 1.23041 0.79347 1.04063 1.01067 1.87927 1.21458 1.26750 1.94952 1.22129 0.95772 0.85608 0.93312 0.90000 1.21960 0.95628 0.94879 1.04204 1.22500 1.06134 0.91867 0.81611 1.45621 1.34219 1.18677 1.14471 1.22681 0.99786 0.89821 0.96697 1.20427 1.07498 0.99215 0.95239 1.17349 0.79388 0.83648 0.81595 1.90781 1.38083 1.46269 1.71747 1.45755 1.49241 1.27536 1.12924 1.21152 0.98565 0.87519 0.91685 1.21909 1.01486 0.99251 0.92743 1.20447 0.83404 0.96197 0.94289 0.93679 1.22253 0.99977 1.00768 0.98217 1.42650 1.03226 1.05920 1.85757 1.19588 0.90280 0.88332 1.38364 0.90674 1.25541 0.98052 0.99431 1.04284 1.69819 1.09351 1.24089 1.58960 0.85253 0.77368 0.79276 0.78147 1.20760 1.22409 1.20222 1.70259 1.17171 1.03358 1.29419 1.23764 0.99068 0.99165 0.83175 1.20823 0.98627 0.89684 0.99943 0.88414 0.92658 0.93298 0.90396 0.85833 0.86054 0.86641 0.77747 0.74890 0.92631 0.94309 0.91383 0.87980 0.90634 0.94605 0.93743 0.79746 0.94309 0.88208 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.82 113.37 1.23 1.34 16 2 O -0.39 -3.79 10.36 -148.98 -1.54 -5.33 16 3 C 0.09 0.71 2.63 30.77 0.08 0.79 16 4 H 0.08 0.47 7.76 -2.39 -0.02 0.45 16 5 C -0.13 -0.65 5.59 30.72 0.17 -0.48 16 6 C 0.10 0.55 6.96 86.44 0.60 1.15 16 7 N -0.45 -7.13 3.11 -512.74 -1.60 -8.73 16 8 C 0.05 1.15 11.32 83.83 0.95 2.10 16 9 C -0.10 -2.86 6.98 40.52 0.28 -2.58 16 10 C 0.59 21.84 7.81 86.64 0.68 22.52 16 11 O -0.59 -25.98 16.88 -4.11 -0.07 -26.05 16 12 N -0.70 -23.91 5.55 -466.47 -2.59 -26.50 16 13 C 0.13 5.11 5.56 86.38 0.48 5.59 16 14 C -0.12 -3.78 4.87 30.59 0.15 -3.64 16 15 C 0.17 6.58 2.89 45.00 0.13 6.71 16 16 H 0.05 1.83 8.08 -2.39 -0.02 1.82 16 17 C -0.15 -5.31 9.49 71.98 0.68 -4.63 16 18 N -0.73 -38.15 4.57 -322.94 -1.48 -39.63 16 19 C -0.23 -13.44 9.93 84.03 0.83 -12.60 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 21 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 22 N -0.97 -62.24 13.06 21.65 0.28 -61.96 16 23 Si 0.97 48.42 29.55 68.60 2.03 50.45 16 24 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 N -0.48 -12.95 11.00 -176.08 -1.94 -14.88 16 28 C 0.21 4.15 7.64 138.05 1.05 5.20 16 29 C -0.05 -0.64 5.96 30.11 0.18 -0.46 16 30 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.05 0.17 8.09 -2.39 -0.02 0.15 16 32 H 0.05 0.23 8.14 -2.38 -0.02 0.21 16 33 H 0.08 0.58 8.11 -2.39 -0.02 0.56 16 34 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.21 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.41 12.11 8.18 -92.71 -0.76 11.35 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 1.83 7.75 -2.39 -0.02 1.82 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.37 20.91 7.80 -92.70 -0.72 20.19 16 47 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 48 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 49 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -81.90 405.17 0.54 -81.36 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.53 Total: 34.68 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 7.97 Total: 16.59 kcal Atomic # 7 Polarization: -144.38 SS G_CDS: -7.32 Total: -151.70 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.61 Total: -31.38 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -81.90 0.54 -81.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713410853.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.141 kcal (2) G-P(sol) polarization free energy of solvation -81.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds