Wall clock time and date at job start Tue Mar 31 2020 19:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35770 * 116.99874 * 2 1 4 4 C 1.35596 * 126.07818 * 175.35948 * 3 2 1 5 5 C 1.41067 * 107.79290 * 180.14796 * 4 3 2 6 6 C 1.47716 * 125.97793 * 179.86589 * 5 4 3 7 7 O 1.21571 * 120.00187 * 6.44991 * 6 5 4 8 8 N 1.34782 * 119.99594 * 186.45415 * 6 5 4 9 9 C 1.46927 * 120.62860 * 175.47140 * 8 6 5 10 10 C 1.52755 * 109.01081 * 233.58473 * 9 8 6 11 11 C 1.53049 * 109.38155 * 305.58812 * 10 9 8 12 12 C 1.52997 * 109.44774 * 181.25201 * 11 10 9 13 13 H 1.08994 * 109.47515 * 299.93915 * 12 11 10 14 14 C 1.53005 * 109.46901 * 179.97438 * 12 11 10 15 15 N 1.46497 * 109.47145 * 59.94471 * 12 11 10 16 16 C 1.36943 * 119.99967 * 204.99843 * 15 12 11 17 17 H 1.08007 * 119.99595 * 359.97438 * 16 15 12 18 18 C 1.38807 * 120.00086 * 179.97438 * 16 15 12 19 19 N 1.31613 * 120.00082 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99757 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47331 * 59.99775 * 20 18 16 22 22 H 1.48502 * 109.46700 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.46985 * 299.99546 * 20 18 16 24 24 C 1.53040 * 109.53764 * 61.23813 * 11 10 9 25 25 C 1.46922 * 120.63079 * 355.74902 * 8 6 5 26 26 N 1.31861 * 108.03592 * 359.59561 * 5 4 3 27 27 N 1.35835 * 126.08790 * 355.06415 * 3 2 1 28 28 C 1.46508 * 125.94643 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.47304 * 175.92844 * 1 2 3 30 30 H 1.08995 * 109.47505 * 295.93306 * 1 2 3 31 31 H 1.09002 * 109.47300 * 55.93022 * 1 2 3 32 32 H 1.08000 * 126.10736 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.58532 * 353.41917 * 9 8 6 34 34 H 1.09001 * 109.58762 * 113.83968 * 9 8 6 35 35 H 1.08996 * 109.56978 * 185.55463 * 10 9 8 36 36 H 1.08998 * 109.38862 * 65.51188 * 10 9 8 37 37 H 1.09005 * 109.45686 * 301.21845 * 11 10 9 38 38 H 1.09008 * 109.46510 * 60.00462 * 14 12 11 39 39 H 1.08996 * 109.47123 * 179.97438 * 14 12 11 40 40 H 1.08994 * 109.47305 * 300.00458 * 14 12 11 41 41 H 0.97000 * 120.00656 * 24.99214 * 15 12 11 42 42 H 0.96998 * 120.00104 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.50167 * 178.68422 * 24 11 10 44 44 H 1.09007 * 109.52255 * 58.59963 * 24 11 10 45 45 H 1.08996 * 109.58881 * 246.15650 * 25 8 6 46 46 H 1.08997 * 109.58740 * 6.44183 * 25 8 6 47 47 H 1.09000 * 109.46840 * 276.66063 * 28 27 3 48 48 H 1.09001 * 109.46945 * 36.66503 * 28 27 3 49 49 H 1.08998 * 109.46877 * 156.66121 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.3811 1.4253 0.0887 5 6 3.5959 2.8192 0.0563 6 6 4.9061 3.4973 0.1301 7 8 5.9309 2.8436 0.1102 8 7 4.9654 4.8408 0.2196 9 6 6.2549 5.5233 0.3933 10 6 6.1725 6.4401 1.6123 11 6 4.9773 7.3836 1.4583 12 6 4.9116 8.3236 2.6637 13 1 4.7960 7.7377 3.5755 14 6 3.7173 9.2675 2.5100 15 7 6.1473 9.1069 2.7400 16 6 6.5623 9.6158 3.9417 17 1 5.9784 9.4399 4.8332 18 6 7.7333 10.3575 4.0141 19 7 8.4451 10.5714 2.9279 20 14 8.2997 11.0510 5.6535 21 1 8.5199 9.9385 6.6121 22 1 9.5689 11.7981 5.4629 23 1 7.2610 11.9673 6.1887 24 6 3.6863 6.5655 1.3788 25 6 3.7412 5.6504 0.1514 26 7 2.4227 3.4105 -0.0572 27 7 1.4341 2.4191 -0.0944 28 6 -0.0081 2.6468 -0.2149 29 1 -0.3634 -1.0251 -0.0730 30 1 -0.3634 0.4494 0.9241 31 1 -0.3634 0.5757 -0.8513 32 1 4.1443 0.6657 0.1715 33 1 7.0417 4.7845 0.5460 34 1 6.4761 6.1177 -0.4933 35 1 7.0891 7.0244 1.6924 36 1 6.0460 5.8366 2.5111 37 1 5.0925 7.9698 0.5465 38 1 2.7982 8.6841 2.4536 39 1 3.6703 9.9368 3.3689 40 1 3.8323 9.8534 1.5981 41 1 6.6715 9.2651 1.9393 42 1 9.2636 11.0894 2.9785 43 1 2.8336 7.2389 1.2926 44 1 3.5825 5.9603 2.2794 45 1 3.7531 6.2553 -0.7551 46 1 2.8700 4.9954 0.1422 47 1 -0.3059 2.5459 -1.2586 48 1 -0.5433 1.9134 0.3883 49 1 -0.2481 3.6504 0.1361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713680225.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:12 Heat of formation + Delta-G solvation = 49.025199 kcal Electronic energy + Delta-G solvation = -29722.047897 eV Core-core repulsion = 25688.127239 eV Total energy + Delta-G solvation = -4033.920658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.99522 -40.01443 -38.61429 -37.74341 -35.36410 -33.88899 -32.80823 -31.45296 -30.65341 -30.12185 -28.40630 -28.15480 -26.88292 -25.45446 -23.86769 -23.16602 -22.45555 -21.79564 -20.66954 -19.65855 -19.14070 -18.07337 -17.15495 -17.09401 -16.75433 -16.05868 -15.60610 -15.49731 -15.33595 -14.90474 -14.69733 -14.28700 -13.98423 -13.82382 -13.74976 -13.67103 -13.55398 -13.25577 -13.21538 -12.73674 -12.48468 -12.11666 -12.02371 -11.88883 -11.77472 -11.64691 -11.17380 -10.98797 -10.83482 -10.70897 -10.61216 -10.24104 -10.14727 -10.03228 -9.88212 -9.66395 -9.50761 -9.42267 -8.84745 -8.75243 -8.48109 -6.88863 -5.71176 -2.98825 1.08827 1.72998 1.92748 2.43499 3.07379 3.32152 3.47284 3.51921 3.52596 3.79928 4.23714 4.26282 4.49636 4.53685 4.63548 4.68098 4.87858 4.95312 4.98969 5.16210 5.17554 5.23421 5.41903 5.46506 5.56195 5.60454 5.61571 5.78197 5.80432 5.89909 6.00359 6.03619 6.16942 6.20404 6.27970 6.32798 6.42556 6.52976 6.55219 6.67620 6.75860 6.90322 6.95579 7.02666 7.05412 7.19239 7.47498 7.74963 8.14376 8.47956 9.58884 10.17824 10.52621 11.51505 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.002345 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.092779 B =11938.866125 C =12492.266023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.288 6.288 3 C 0.272 3.728 4 C -0.234 4.234 5 C 0.070 3.930 6 C 0.594 3.406 7 O -0.530 6.530 8 N -0.590 5.590 9 C 0.111 3.889 10 C -0.122 4.122 11 C -0.091 4.091 12 C 0.178 3.822 13 H 0.044 0.956 14 C -0.165 4.165 15 N -0.723 5.723 16 C -0.234 4.234 17 H 0.068 0.932 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.288 1.288 24 C -0.124 4.124 25 C 0.076 3.924 26 N -0.250 5.250 27 N -0.397 5.397 28 C 0.073 3.927 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.166 0.834 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.037 0.963 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.132 0.868 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.121 -19.606 -9.435 30.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.194 6.194 3 C 0.105 3.895 4 C -0.264 4.264 5 C -0.096 4.096 6 C 0.379 3.621 7 O -0.404 6.404 8 N -0.322 5.322 9 C -0.010 4.010 10 C -0.160 4.160 11 C -0.110 4.110 12 C 0.068 3.932 13 H 0.062 0.938 14 C -0.225 4.225 15 N -0.364 5.364 16 C -0.365 4.365 17 H 0.085 0.915 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.163 4.163 25 C -0.047 4.047 26 N -0.081 5.081 27 N -0.192 5.192 28 C -0.067 4.067 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.183 0.817 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.149 0.851 47 H 0.097 0.903 48 H 0.114 0.886 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.172 -19.127 -9.368 30.031 hybrid contribution 0.398 0.051 0.724 0.828 sum -20.774 -19.076 -8.644 29.498 Atomic orbital electron populations 1.23655 0.77973 1.05389 1.01484 1.86314 1.21616 1.21664 1.89846 1.19585 0.91120 0.78959 0.99869 1.20337 0.92138 0.95552 1.18364 1.21924 0.92688 0.93084 1.01934 1.17023 0.85984 0.81792 0.77331 1.90798 1.33992 1.64874 1.50785 1.48033 1.09360 1.04824 1.69972 1.21729 0.84334 0.95965 0.99019 1.21819 1.00505 0.97079 0.96573 1.21405 0.93700 0.95965 0.99949 1.20212 0.87447 0.90763 0.94766 0.93819 1.22491 0.98234 1.00366 1.01453 1.42407 1.23561 1.61812 1.08600 1.19174 1.04304 1.25703 0.87337 0.91452 1.24704 0.97978 1.01428 0.96937 1.69638 1.16982 1.45055 1.26566 0.86308 0.77761 0.78764 0.83604 1.21366 1.21780 1.21442 1.21975 0.98729 0.97912 0.97694 1.22761 0.88146 0.95354 0.98482 1.77367 0.95365 1.09647 1.25672 1.49400 1.07328 1.03213 1.59299 1.22569 0.74991 1.05765 1.03377 0.87227 0.91810 0.91712 0.81659 0.89112 0.91274 0.88856 0.92030 0.91429 0.94371 0.93121 0.93620 0.78317 0.93561 0.90549 0.91896 0.91640 0.85146 0.90310 0.88587 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.37 101.05 0.95 0.98 16 2 O -0.29 -2.37 10.57 -19.02 -0.20 -2.57 16 3 C 0.27 2.77 7.78 -16.72 -0.13 2.64 16 4 C -0.23 -2.90 10.60 -39.45 -0.42 -3.32 16 5 C 0.07 0.95 6.87 -82.91 -0.57 0.38 16 6 C 0.59 9.26 7.70 -12.39 -0.10 9.17 16 7 O -0.53 -9.63 16.34 5.30 0.09 -9.54 16 8 N -0.59 -8.57 2.98 -174.19 -0.52 -9.09 16 9 C 0.11 1.68 6.39 -3.94 -0.03 1.65 16 10 C -0.12 -2.04 5.21 -26.83 -0.14 -2.18 16 11 C -0.09 -1.46 1.79 -90.58 -0.16 -1.62 16 12 C 0.18 3.47 2.47 -67.93 -0.17 3.30 16 13 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 14 C -0.17 -2.95 9.14 37.16 0.34 -2.61 16 15 N -0.72 -17.71 4.41 -53.43 -0.24 -17.94 16 16 C -0.23 -6.45 9.93 -15.06 -0.15 -6.60 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C -0.01 -0.42 5.50 -17.44 -0.10 -0.52 16 19 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 20 Si 0.90 22.59 29.55 -169.99 -5.02 17.57 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C -0.12 -1.66 5.04 -26.61 -0.13 -1.80 16 25 C 0.08 0.96 6.32 -3.71 -0.02 0.94 16 26 N -0.25 -2.96 8.88 33.34 0.30 -2.66 16 27 N -0.40 -3.64 4.03 -68.18 -0.28 -3.92 16 28 C 0.07 0.30 9.63 59.85 0.58 0.88 16 29 H 0.11 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.14 6.53 -51.93 -0.34 -0.20 16 31 H 0.06 0.12 5.99 -51.93 -0.31 -0.19 16 32 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.09 1.44 7.03 -51.93 -0.37 1.07 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.80 7.40 -51.93 -0.38 1.41 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.56 6.40 -51.92 -0.33 0.23 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.38 9.97 7.58 -40.82 -0.31 9.66 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.08 0.93 6.36 -51.93 -0.33 0.60 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.13 1.58 3.68 -121.95 -0.45 1.13 16 47 H 0.08 0.21 7.72 -51.93 -0.40 -0.19 16 48 H 0.10 0.17 4.51 -51.93 -0.23 -0.06 16 49 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -34.16 383.63 -7.26 -41.42 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.65 Total: 7.05 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.25 Total: 1.29 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.01 Total: -60.99 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.11 Total: -12.11 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.16 -7.26 -41.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713680225.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.442 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds