Wall clock time and date at job start Tue Mar 31 2020 19:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35770 * 116.99874 * 2 1 4 4 C 1.35596 * 126.07818 * 175.35948 * 3 2 1 5 5 C 1.41067 * 107.79290 * 180.14796 * 4 3 2 6 6 C 1.47716 * 125.97793 * 179.86589 * 5 4 3 7 7 O 1.21571 * 120.00187 * 6.44991 * 6 5 4 8 8 N 1.34782 * 119.99594 * 186.45415 * 6 5 4 9 9 C 1.46927 * 120.62860 * 175.47140 * 8 6 5 10 10 C 1.52755 * 109.01081 * 233.58473 * 9 8 6 11 11 C 1.53049 * 109.38155 * 305.58812 * 10 9 8 12 12 C 1.52997 * 109.44774 * 181.25201 * 11 10 9 13 13 H 1.08994 * 109.47515 * 299.93915 * 12 11 10 14 14 C 1.53005 * 109.46901 * 179.97438 * 12 11 10 15 15 N 1.46497 * 109.47145 * 59.94471 * 12 11 10 16 16 C 1.36943 * 119.99967 * 204.99843 * 15 12 11 17 17 H 1.08007 * 119.99595 * 359.97438 * 16 15 12 18 18 C 1.38807 * 120.00086 * 179.97438 * 16 15 12 19 19 N 1.31613 * 120.00082 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99757 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47331 * 59.99775 * 20 18 16 22 22 H 1.48502 * 109.46700 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.46985 * 299.99546 * 20 18 16 24 24 C 1.53040 * 109.53764 * 61.23813 * 11 10 9 25 25 C 1.46922 * 120.63079 * 355.74902 * 8 6 5 26 26 N 1.31861 * 108.03592 * 359.59561 * 5 4 3 27 27 N 1.35835 * 126.08790 * 355.06415 * 3 2 1 28 28 C 1.46508 * 125.94643 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.47304 * 175.92844 * 1 2 3 30 30 H 1.08995 * 109.47505 * 295.93306 * 1 2 3 31 31 H 1.09002 * 109.47300 * 55.93022 * 1 2 3 32 32 H 1.08000 * 126.10736 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.58532 * 353.41917 * 9 8 6 34 34 H 1.09001 * 109.58762 * 113.83968 * 9 8 6 35 35 H 1.08996 * 109.56978 * 185.55463 * 10 9 8 36 36 H 1.08998 * 109.38862 * 65.51188 * 10 9 8 37 37 H 1.09005 * 109.45686 * 301.21845 * 11 10 9 38 38 H 1.09008 * 109.46510 * 60.00462 * 14 12 11 39 39 H 1.08996 * 109.47123 * 179.97438 * 14 12 11 40 40 H 1.08994 * 109.47305 * 300.00458 * 14 12 11 41 41 H 0.97000 * 120.00656 * 24.99214 * 15 12 11 42 42 H 0.96998 * 120.00104 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.50167 * 178.68422 * 24 11 10 44 44 H 1.09007 * 109.52255 * 58.59963 * 24 11 10 45 45 H 1.08996 * 109.58881 * 246.15650 * 25 8 6 46 46 H 1.08997 * 109.58740 * 6.44183 * 25 8 6 47 47 H 1.09000 * 109.46840 * 276.66063 * 28 27 3 48 48 H 1.09001 * 109.46945 * 36.66503 * 28 27 3 49 49 H 1.08998 * 109.46877 * 156.66121 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.3811 1.4253 0.0887 5 6 3.5959 2.8192 0.0563 6 6 4.9061 3.4973 0.1301 7 8 5.9309 2.8436 0.1102 8 7 4.9654 4.8408 0.2196 9 6 6.2549 5.5233 0.3933 10 6 6.1725 6.4401 1.6123 11 6 4.9773 7.3836 1.4583 12 6 4.9116 8.3236 2.6637 13 1 4.7960 7.7377 3.5755 14 6 3.7173 9.2675 2.5100 15 7 6.1473 9.1069 2.7400 16 6 6.5623 9.6158 3.9417 17 1 5.9784 9.4399 4.8332 18 6 7.7333 10.3575 4.0141 19 7 8.4451 10.5714 2.9279 20 14 8.2997 11.0510 5.6535 21 1 8.5199 9.9385 6.6121 22 1 9.5689 11.7981 5.4629 23 1 7.2610 11.9673 6.1887 24 6 3.6863 6.5655 1.3788 25 6 3.7412 5.6504 0.1514 26 7 2.4227 3.4105 -0.0572 27 7 1.4341 2.4191 -0.0944 28 6 -0.0081 2.6468 -0.2149 29 1 -0.3634 -1.0251 -0.0730 30 1 -0.3634 0.4494 0.9241 31 1 -0.3634 0.5757 -0.8513 32 1 4.1443 0.6657 0.1715 33 1 7.0417 4.7845 0.5460 34 1 6.4761 6.1177 -0.4933 35 1 7.0891 7.0244 1.6924 36 1 6.0460 5.8366 2.5111 37 1 5.0925 7.9698 0.5465 38 1 2.7982 8.6841 2.4536 39 1 3.6703 9.9368 3.3689 40 1 3.8323 9.8534 1.5981 41 1 6.6715 9.2651 1.9393 42 1 9.2636 11.0894 2.9785 43 1 2.8336 7.2389 1.2926 44 1 3.5825 5.9603 2.2794 45 1 3.7531 6.2553 -0.7551 46 1 2.8700 4.9954 0.1422 47 1 -0.3059 2.5459 -1.2586 48 1 -0.5433 1.9134 0.3883 49 1 -0.2481 3.6504 0.1361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713680225.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:11 Heat of formation + Delta-G solvation = 25.117759 kcal Electronic energy + Delta-G solvation = -29723.084602 eV Core-core repulsion = 25688.127239 eV Total energy + Delta-G solvation = -4034.957363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.79208 -41.13351 -39.40939 -38.98724 -36.91009 -34.73039 -34.41857 -32.65821 -32.22423 -30.97708 -29.89430 -29.00640 -27.47327 -26.61179 -25.67375 -24.27327 -23.71599 -22.53667 -21.94880 -21.09629 -20.22733 -19.21183 -18.76453 -17.81289 -17.70161 -16.93979 -16.76930 -16.47953 -16.33392 -16.25228 -15.66411 -15.47859 -15.38164 -15.04710 -14.81865 -14.70261 -14.62019 -14.26268 -14.06500 -13.95674 -13.82230 -13.53711 -13.38971 -13.09870 -12.86050 -12.75648 -12.40060 -12.31319 -12.26539 -12.19324 -12.09685 -11.92954 -11.63220 -11.47733 -11.37062 -11.25654 -10.85481 -10.69190 -10.23854 -9.68678 -9.54007 -8.93187 -7.89510 -5.15778 0.15911 1.04210 1.05350 1.47255 1.49647 1.55461 1.71006 2.18300 2.22478 2.58833 3.00980 3.43763 3.64792 3.82356 3.85834 3.92997 4.03104 4.11054 4.18294 4.27332 4.28197 4.33820 4.37620 4.39484 4.47213 4.56783 4.58770 4.63912 4.67510 4.75617 4.82132 4.87047 4.95898 4.97755 5.00467 5.05019 5.11503 5.17230 5.23797 5.28492 5.41347 5.51626 5.57218 5.69632 5.70785 6.14338 6.30921 6.33279 6.39495 6.97500 7.39343 8.18352 8.40950 9.33646 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.002345 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.092779 B =11938.866125 C =12492.266023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.300 6.300 3 C 0.286 3.714 4 C -0.264 4.264 5 C 0.049 3.951 6 C 0.590 3.410 7 O -0.568 6.568 8 N -0.589 5.589 9 C 0.118 3.882 10 C -0.112 4.112 11 C -0.080 4.080 12 C 0.172 3.828 13 H 0.032 0.968 14 C -0.155 4.155 15 N -0.733 5.733 16 C -0.231 4.231 17 H 0.070 0.930 18 C -0.077 4.077 19 N -0.968 5.968 20 Si 0.966 3.034 21 H -0.282 1.282 22 H -0.297 1.297 23 H -0.279 1.279 24 C -0.114 4.114 25 C 0.078 3.922 26 N -0.253 5.253 27 N -0.383 5.383 28 C 0.057 3.943 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.044 0.956 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.100 0.900 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.144 0.856 47 H 0.101 0.899 48 H 0.124 0.876 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.016 -20.375 -9.740 33.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.206 6.206 3 C 0.117 3.883 4 C -0.294 4.294 5 C -0.115 4.115 6 C 0.377 3.623 7 O -0.445 6.445 8 N -0.321 5.321 9 C -0.004 4.004 10 C -0.151 4.151 11 C -0.100 4.100 12 C 0.064 3.936 13 H 0.050 0.950 14 C -0.215 4.215 15 N -0.373 5.373 16 C -0.363 4.363 17 H 0.088 0.912 18 C -0.269 4.269 19 N -0.619 5.619 20 Si 0.796 3.204 21 H -0.208 1.208 22 H -0.224 1.224 23 H -0.206 1.206 24 C -0.153 4.153 25 C -0.044 4.044 26 N -0.085 5.085 27 N -0.180 5.180 28 C -0.081 4.081 29 H 0.149 0.851 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.175 0.825 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.118 0.882 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.161 0.839 47 H 0.119 0.881 48 H 0.142 0.858 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -25.158 -19.907 -9.663 33.505 hybrid contribution 1.390 0.153 0.802 1.612 sum -23.768 -19.754 -8.861 32.151 Atomic orbital electron populations 1.24101 0.75211 1.07507 1.03111 1.86338 1.24480 1.20402 1.89418 1.19420 0.90658 0.79981 0.98254 1.20377 0.93540 0.95193 1.20276 1.21544 0.92279 0.93471 1.04244 1.17359 0.86554 0.81878 0.76541 1.90763 1.35536 1.65670 1.52553 1.48095 1.09615 1.04841 1.69509 1.21551 0.84824 0.95419 0.98608 1.21652 0.99648 0.96930 0.96840 1.21293 0.94967 0.95400 0.98323 1.20447 0.86241 0.91051 0.95822 0.94960 1.22336 0.98838 0.99859 1.00455 1.42584 1.25183 1.62239 1.07277 1.19514 1.03910 1.24457 0.88446 0.91230 1.25451 0.98621 1.02820 1.00028 1.69791 1.17326 1.46396 1.28417 0.85319 0.77014 0.78081 0.80017 1.20838 1.22355 1.20562 1.21911 0.97549 0.97847 0.97947 1.22908 0.87676 0.95259 0.98581 1.77143 0.95181 1.10555 1.25606 1.49695 1.08610 1.02298 1.57373 1.23114 0.72029 1.07372 1.05564 0.85136 0.90275 0.89825 0.82544 0.90385 0.90055 0.91895 0.93422 0.91178 0.90456 0.95137 0.93688 0.79521 0.94249 0.88163 0.92420 0.90211 0.83946 0.88118 0.85819 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.02 9.37 113.37 1.06 1.05 16 2 O -0.30 -4.24 10.57 -90.97 -0.96 -5.20 16 3 C 0.29 5.34 7.78 83.46 0.65 5.99 16 4 C -0.26 -6.57 10.60 22.35 0.24 -6.34 16 5 C 0.05 1.33 6.87 42.34 0.29 1.62 16 6 C 0.59 18.79 7.70 86.75 0.67 19.46 16 7 O -0.57 -21.65 16.34 -3.94 -0.06 -21.72 16 8 N -0.59 -17.00 2.98 -823.29 -2.45 -19.45 16 9 C 0.12 3.65 6.39 86.22 0.55 4.20 16 10 C -0.11 -3.88 5.21 30.53 0.16 -3.72 16 11 C -0.08 -2.53 1.79 -10.76 -0.02 -2.55 16 12 C 0.17 6.64 2.47 44.99 0.11 6.75 16 13 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 14 C -0.16 -5.23 9.14 71.98 0.66 -4.58 16 15 N -0.73 -36.49 4.41 -322.94 -1.42 -37.92 16 16 C -0.23 -12.89 9.93 84.03 0.83 -12.06 16 17 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 18 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 19 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 20 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 C -0.11 -2.78 5.04 30.67 0.15 -2.63 16 25 C 0.08 1.81 6.32 86.36 0.55 2.36 16 26 N -0.25 -5.50 8.88 -48.42 -0.43 -5.93 16 27 N -0.38 -5.96 4.03 -480.56 -1.94 -7.90 16 28 C 0.06 0.23 9.63 127.77 1.23 1.46 16 29 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.08 0.00 6.53 -2.39 -0.02 -0.02 16 31 H 0.08 -0.06 5.99 -2.39 -0.01 -0.07 16 32 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 33 H 0.08 2.62 7.03 -2.39 -0.02 2.60 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.56 7.40 -2.39 -0.02 2.54 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.08 1.99 6.40 -2.38 -0.02 1.98 16 39 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.37 19.95 7.58 -92.71 -0.70 19.24 16 42 H 0.25 15.01 8.31 -92.71 -0.77 14.23 16 43 H 0.10 2.01 6.36 -2.39 -0.02 2.00 16 44 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.14 3.09 3.68 -93.98 -0.35 2.75 16 47 H 0.10 0.05 7.72 -2.39 -0.02 0.03 16 48 H 0.12 -0.16 4.51 -2.39 -0.01 -0.17 16 49 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -76.79 383.63 2.58 -74.21 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.06 Total: 27.23 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 7.60 Total: 7.01 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -5.96 Total: -130.62 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.03 Total: -26.92 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -76.79 2.58 -74.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713680225.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.332 kcal (2) G-P(sol) polarization free energy of solvation -76.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds