Wall clock time and date at job start Tue Mar 31 2020 19:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46990 * 2 1 4 4 N 1.46501 * 109.47425 * 120.00055 * 2 1 3 5 5 C 1.36939 * 120.00019 * 275.00151 * 4 2 1 6 6 H 1.08000 * 119.99800 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99695 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47163 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46601 * 120.00579 * 9 7 5 12 12 H 1.48501 * 109.47136 * 240.00250 * 9 7 5 13 13 C 1.53006 * 109.47399 * 240.00054 * 2 1 3 14 14 C 1.53040 * 109.46257 * 180.02562 * 13 2 1 15 15 C 1.53192 * 109.31355 * 178.61567 * 14 13 2 16 16 N 1.46929 * 108.77386 * 54.63033 * 15 14 13 17 17 C 1.34780 * 120.62711 * 126.37016 * 16 15 14 18 18 O 1.21704 * 120.00108 * 175.02574 * 17 16 15 19 19 C 1.46664 * 119.99925 * 355.02488 * 17 16 15 20 20 C 1.35145 * 126.37514 * 87.57697 * 19 17 16 21 21 N 1.37015 * 107.87689 * 179.89876 * 20 19 17 22 22 C 1.46502 * 125.64990 * 180.11012 * 21 20 19 23 23 C 1.34617 * 108.69363 * 0.37264 * 21 20 19 24 24 O 1.21731 * 125.72432 * 179.79433 * 23 21 20 25 25 N 1.34757 * 108.54942 * 359.77050 * 23 21 20 26 26 C 1.46496 * 126.18512 * 180.02562 * 25 23 21 27 27 C 1.46923 * 118.74319 * 306.39537 * 16 15 14 28 28 C 1.53044 * 109.45708 * 59.99796 * 13 2 1 29 29 H 1.09008 * 109.46837 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47268 * 299.99733 * 1 2 3 31 31 H 1.08996 * 109.47012 * 60.00367 * 1 2 3 32 32 H 0.96996 * 119.99806 * 94.99585 * 4 2 1 33 33 H 0.97005 * 119.99496 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.44497 * 300.03639 * 13 2 1 35 35 H 1.09002 * 109.49150 * 298.56536 * 14 13 2 36 36 H 1.08996 * 109.49511 * 58.65864 * 14 13 2 37 37 H 1.08996 * 109.58521 * 294.85221 * 15 14 13 38 38 H 1.08999 * 109.70217 * 174.48661 * 15 14 13 39 39 H 1.08010 * 126.05965 * 0.02562 * 20 19 17 40 40 H 1.08999 * 109.46769 * 180.28634 * 22 21 20 41 41 H 1.09006 * 109.46971 * 300.27673 * 22 21 20 42 42 H 1.08992 * 109.47131 * 60.28118 * 22 21 20 43 43 H 1.08993 * 109.47303 * 270.00484 * 26 25 23 44 44 H 1.09007 * 109.46805 * 30.00156 * 26 25 23 45 45 H 1.08998 * 109.47225 * 149.99924 * 26 25 23 46 46 H 1.08994 * 109.58457 * 293.81882 * 27 16 15 47 47 H 1.08997 * 109.70535 * 173.46509 * 27 16 15 48 48 H 1.08998 * 109.49644 * 301.33679 * 28 13 2 49 49 H 1.08998 * 109.49656 * 61.40535 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8918 1.0403 2.4243 7 6 2.6114 -0.6620 3.5092 8 7 2.9245 -1.9390 3.4501 9 14 2.7905 0.2701 5.1181 10 1 2.3765 1.6824 4.9207 11 1 1.9294 -0.3579 6.1523 12 1 4.2074 0.2263 5.5605 13 6 2.0400 -0.7213 -1.2493 14 6 3.5704 -0.7217 -1.2487 15 6 4.0774 -1.4745 -2.4828 16 7 3.4745 -0.8768 -3.6820 17 6 4.2478 -0.4571 -4.7030 18 8 3.7339 -0.0476 -5.7273 19 6 5.7088 -0.4939 -4.5795 20 6 6.5122 -1.5391 -4.8769 21 7 7.8048 -1.1614 -4.6239 22 6 8.9919 -1.9985 -4.8146 23 6 7.8025 0.1043 -4.1655 24 8 8.7858 0.7446 -3.8413 25 7 6.5292 0.5438 -4.1263 26 6 6.0848 1.8693 -3.6885 27 6 2.0126 -0.7449 -3.7469 28 6 1.5297 0.0004 -2.4987 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1526 33 1 3.2479 -2.3963 4.2421 34 1 1.6760 -1.7486 -1.2492 35 1 3.9344 0.3055 -1.2741 36 1 3.9337 -1.2147 -0.3470 37 1 3.7906 -2.5238 -2.4140 38 1 5.1629 -1.3953 -2.5414 39 1 6.1924 -2.5009 -5.2501 40 1 9.8815 -1.4380 -4.5275 41 1 8.9098 -2.8918 -4.1953 42 1 9.0674 -2.2884 -5.8625 43 1 5.8842 1.8498 -2.6173 44 1 6.8644 2.6016 -3.8988 45 1 5.1755 2.1428 -4.2236 46 1 1.5576 -1.7347 -3.7812 47 1 1.7335 -0.1834 -4.6385 48 1 0.4400 0.0214 -2.4870 49 1 1.9132 1.0206 -2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714812772.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:17 Heat of formation + Delta-G solvation = -0.486459 kcal Electronic energy + Delta-G solvation = -30385.655075 eV Core-core repulsion = 26349.587430 eV Total energy + Delta-G solvation = -4036.067645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.64089 -40.14720 -38.02011 -36.91309 -35.63685 -35.48906 -33.00113 -31.43775 -30.88565 -30.56697 -28.62324 -27.94086 -26.36614 -25.45844 -24.16182 -23.12105 -22.70016 -21.14529 -20.87324 -19.79531 -19.33553 -17.97059 -17.25676 -17.02250 -16.65850 -16.18889 -15.67839 -15.33579 -15.04106 -14.79735 -14.37510 -14.35303 -14.04762 -13.95745 -13.90501 -13.62299 -13.32866 -13.15457 -12.82174 -12.72435 -12.61627 -12.58055 -12.38111 -12.10377 -11.73869 -11.66075 -11.22193 -11.04791 -10.90086 -10.78829 -10.74441 -10.36231 -10.30833 -10.20991 -10.17242 -10.04107 -9.82463 -9.62187 -8.94518 -8.74331 -7.96579 -6.97736 -5.79859 -3.07656 1.57660 1.72458 2.40170 2.67576 2.72820 3.30459 3.40897 3.47330 3.48890 4.26564 4.55221 4.56250 4.78286 4.82806 4.85000 4.95435 4.97174 4.99881 5.15001 5.15354 5.17659 5.25963 5.31085 5.44952 5.46777 5.51127 5.60454 5.69550 5.72232 5.86473 5.86927 5.94787 6.05302 6.10551 6.13990 6.26929 6.31761 6.42364 6.44901 6.48552 6.61125 6.72871 6.90124 7.02829 7.08798 7.16963 7.68618 7.85324 8.05737 8.39216 9.50758 10.08411 10.43015 11.42861 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011813 B = 0.003244 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.608018 B = 8627.921259 C =10015.934117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.235 4.235 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.090 4.090 14 C -0.121 4.121 15 C 0.105 3.895 16 N -0.591 5.591 17 C 0.594 3.406 18 O -0.529 6.529 19 C -0.021 4.021 20 C 0.038 3.962 21 N -0.526 5.526 22 C 0.095 3.905 23 C 0.651 3.349 24 O -0.567 6.567 25 N -0.514 5.514 26 C 0.099 3.901 27 C 0.113 3.887 28 C -0.128 4.128 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.188 0.812 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -1.516 -19.364 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.734 3.266 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.110 4.110 14 C -0.159 4.159 15 C -0.017 4.017 16 N -0.324 5.324 17 C 0.379 3.621 18 O -0.405 6.405 19 C -0.130 4.130 20 C -0.089 4.089 21 N -0.243 5.243 22 C -0.047 4.047 23 C 0.353 3.647 24 O -0.445 6.445 25 N -0.235 5.235 26 C -0.042 4.042 27 C -0.009 4.009 28 C -0.167 4.167 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.216 0.784 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.205 0.795 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.099 0.901 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.031 -0.653 -19.503 20.152 hybrid contribution 0.093 0.012 1.114 1.118 sum 5.124 -0.642 -18.389 19.101 Atomic orbital electron populations 1.22496 0.99506 1.00767 0.99875 1.20208 0.91609 0.95296 0.86053 0.93768 1.42416 1.78094 1.10611 1.05304 1.19260 1.36159 0.93817 0.87362 0.91302 1.24696 1.02320 0.95937 0.97943 1.69658 1.51170 1.08626 1.28731 0.86178 0.77303 0.78845 0.84246 1.20622 1.21947 1.21928 1.21396 0.94847 1.00031 0.94680 1.21880 0.96046 1.00894 0.97114 1.21942 0.98205 0.97452 0.84081 1.48171 1.07382 1.59649 1.17193 1.16894 0.83942 0.77971 0.83342 1.90851 1.74232 1.46834 1.28611 1.19709 0.92153 0.89783 1.11344 1.21697 0.82069 0.99424 1.05753 1.44798 1.07388 1.13637 1.58514 1.21843 0.85764 0.94441 1.02601 1.16080 0.83486 0.82168 0.82937 1.91042 1.34624 1.60654 1.58158 1.45248 1.05735 1.13580 1.58972 1.21817 1.01418 0.80024 1.00979 1.21731 0.78122 1.01278 0.99757 1.22033 1.01373 0.99589 0.93685 0.93577 0.93022 0.94296 0.78358 0.93636 0.91241 0.92064 0.88840 0.90766 0.90128 0.79468 0.88795 0.90343 0.90569 0.90624 0.89313 0.89932 0.91073 0.89123 0.90096 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.14 37.16 0.34 -2.44 16 2 C 0.18 3.20 2.47 -67.93 -0.17 3.03 16 3 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 4 N -0.72 -16.71 4.41 -53.42 -0.24 -16.94 16 5 C -0.23 -6.22 9.93 -15.06 -0.15 -6.37 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.14 13.06 55.49 0.72 -26.41 16 9 Si 0.90 21.96 29.55 -169.99 -5.02 16.93 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C -0.09 -1.26 1.79 -90.57 -0.16 -1.42 16 14 C -0.12 -1.70 5.22 -26.61 -0.14 -1.84 16 15 C 0.11 1.18 6.35 -3.71 -0.02 1.16 16 16 N -0.59 -6.66 2.97 -174.32 -0.52 -7.18 16 17 C 0.59 7.38 7.06 -12.86 -0.09 7.29 16 18 O -0.53 -8.06 16.55 5.18 0.09 -7.98 16 19 C -0.02 -0.25 4.66 -81.91 -0.38 -0.63 16 20 C 0.04 0.35 11.20 -16.34 -0.18 0.17 16 21 N -0.53 -5.47 3.12 -128.78 -0.40 -5.87 16 22 C 0.09 0.63 11.16 59.85 0.67 1.29 16 23 C 0.65 9.04 8.49 -87.08 -0.74 8.31 16 24 O -0.57 -9.68 17.35 5.16 0.09 -9.59 16 25 N -0.51 -6.50 3.21 -124.83 -0.40 -6.90 16 26 C 0.10 1.07 10.92 59.84 0.65 1.73 16 27 C 0.11 1.20 6.42 -3.71 -0.02 1.18 16 28 C -0.13 -1.47 5.04 -26.61 -0.13 -1.60 16 29 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.53 6.40 -51.93 -0.33 0.20 16 32 H 0.38 9.40 7.58 -40.82 -0.31 9.09 16 33 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.58 7.41 -51.93 -0.38 1.20 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.90 6.18 -51.93 -0.32 0.58 16 39 H 0.19 1.08 8.06 -52.48 -0.42 0.65 16 40 H 0.09 0.71 7.68 -51.93 -0.40 0.31 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 45 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 1.00 7.04 -51.93 -0.37 0.63 16 48 H 0.08 0.86 6.36 -51.93 -0.33 0.53 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -34.24 395.21 -8.24 -42.48 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.89 Total: 6.11 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -0.63 Total: 9.40 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.83 Total: -63.31 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.18 Total: -17.57 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.24 -8.24 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714812772.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.994 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds