Wall clock time and date at job start Tue Mar 31 2020 19:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46990 * 2 1 4 4 N 1.46501 * 109.47425 * 120.00055 * 2 1 3 5 5 C 1.36939 * 120.00019 * 275.00151 * 4 2 1 6 6 H 1.08000 * 119.99800 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99695 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47163 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46601 * 120.00579 * 9 7 5 12 12 H 1.48501 * 109.47136 * 240.00250 * 9 7 5 13 13 C 1.53006 * 109.47399 * 240.00054 * 2 1 3 14 14 C 1.53040 * 109.46257 * 180.02562 * 13 2 1 15 15 C 1.53192 * 109.31355 * 178.61567 * 14 13 2 16 16 N 1.46929 * 108.77386 * 54.63033 * 15 14 13 17 17 C 1.34780 * 120.62711 * 126.37016 * 16 15 14 18 18 O 1.21704 * 120.00108 * 175.02574 * 17 16 15 19 19 C 1.46664 * 119.99925 * 355.02488 * 17 16 15 20 20 C 1.35145 * 126.37514 * 87.57697 * 19 17 16 21 21 N 1.37015 * 107.87689 * 179.89876 * 20 19 17 22 22 C 1.46502 * 125.64990 * 180.11012 * 21 20 19 23 23 C 1.34617 * 108.69363 * 0.37264 * 21 20 19 24 24 O 1.21731 * 125.72432 * 179.79433 * 23 21 20 25 25 N 1.34757 * 108.54942 * 359.77050 * 23 21 20 26 26 C 1.46496 * 126.18512 * 180.02562 * 25 23 21 27 27 C 1.46923 * 118.74319 * 306.39537 * 16 15 14 28 28 C 1.53044 * 109.45708 * 59.99796 * 13 2 1 29 29 H 1.09008 * 109.46837 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47268 * 299.99733 * 1 2 3 31 31 H 1.08996 * 109.47012 * 60.00367 * 1 2 3 32 32 H 0.96996 * 119.99806 * 94.99585 * 4 2 1 33 33 H 0.97005 * 119.99496 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.44497 * 300.03639 * 13 2 1 35 35 H 1.09002 * 109.49150 * 298.56536 * 14 13 2 36 36 H 1.08996 * 109.49511 * 58.65864 * 14 13 2 37 37 H 1.08996 * 109.58521 * 294.85221 * 15 14 13 38 38 H 1.08999 * 109.70217 * 174.48661 * 15 14 13 39 39 H 1.08010 * 126.05965 * 0.02562 * 20 19 17 40 40 H 1.08999 * 109.46769 * 180.28634 * 22 21 20 41 41 H 1.09006 * 109.46971 * 300.27673 * 22 21 20 42 42 H 1.08992 * 109.47131 * 60.28118 * 22 21 20 43 43 H 1.08993 * 109.47303 * 270.00484 * 26 25 23 44 44 H 1.09007 * 109.46805 * 30.00156 * 26 25 23 45 45 H 1.08998 * 109.47225 * 149.99924 * 26 25 23 46 46 H 1.08994 * 109.58457 * 293.81882 * 27 16 15 47 47 H 1.08997 * 109.70535 * 173.46509 * 27 16 15 48 48 H 1.08998 * 109.49644 * 301.33679 * 28 13 2 49 49 H 1.08998 * 109.49656 * 61.40535 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8918 1.0403 2.4243 7 6 2.6114 -0.6620 3.5092 8 7 2.9245 -1.9390 3.4501 9 14 2.7905 0.2701 5.1181 10 1 2.3765 1.6824 4.9207 11 1 1.9294 -0.3579 6.1523 12 1 4.2074 0.2263 5.5605 13 6 2.0400 -0.7213 -1.2493 14 6 3.5704 -0.7217 -1.2487 15 6 4.0774 -1.4745 -2.4828 16 7 3.4745 -0.8768 -3.6820 17 6 4.2478 -0.4571 -4.7030 18 8 3.7339 -0.0476 -5.7273 19 6 5.7088 -0.4939 -4.5795 20 6 6.5122 -1.5391 -4.8769 21 7 7.8048 -1.1614 -4.6239 22 6 8.9919 -1.9985 -4.8146 23 6 7.8025 0.1043 -4.1655 24 8 8.7858 0.7446 -3.8413 25 7 6.5292 0.5438 -4.1263 26 6 6.0848 1.8693 -3.6885 27 6 2.0126 -0.7449 -3.7469 28 6 1.5297 0.0004 -2.4987 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1526 33 1 3.2479 -2.3963 4.2421 34 1 1.6760 -1.7486 -1.2492 35 1 3.9344 0.3055 -1.2741 36 1 3.9337 -1.2147 -0.3470 37 1 3.7906 -2.5238 -2.4140 38 1 5.1629 -1.3953 -2.5414 39 1 6.1924 -2.5009 -5.2501 40 1 9.8815 -1.4380 -4.5275 41 1 8.9098 -2.8918 -4.1953 42 1 9.0674 -2.2884 -5.8625 43 1 5.8842 1.8498 -2.6173 44 1 6.8644 2.6016 -3.8988 45 1 5.1755 2.1428 -4.2236 46 1 1.5576 -1.7347 -3.7812 47 1 1.7335 -0.1834 -4.6385 48 1 0.4400 0.0214 -2.4870 49 1 1.9132 1.0206 -2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714812772.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:16 Heat of formation + Delta-G solvation = -22.125787 kcal Electronic energy + Delta-G solvation = -30386.593427 eV Core-core repulsion = 26349.587430 eV Total energy + Delta-G solvation = -4037.005997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.53413 -41.14089 -39.19552 -37.98198 -36.87905 -36.47532 -34.63595 -32.67699 -32.09787 -31.50173 -30.06409 -28.97528 -27.17312 -26.62760 -25.68412 -24.34333 -23.69913 -22.23846 -21.85121 -21.11126 -20.34248 -19.22062 -18.69726 -18.08346 -17.57801 -17.14529 -16.80271 -16.62137 -16.15456 -15.85560 -15.63047 -15.46967 -15.23517 -15.08105 -14.93487 -14.86919 -14.32855 -14.20424 -14.03603 -13.95564 -13.53915 -13.47762 -13.45213 -13.31157 -12.99317 -12.85775 -12.78610 -12.59438 -12.28791 -12.13597 -12.07088 -11.83356 -11.81252 -11.49597 -11.36187 -11.18427 -11.11622 -10.93293 -10.85505 -9.72630 -8.92908 -8.86425 -7.90842 -5.16022 0.77940 0.83808 1.46590 1.48109 1.52535 1.56326 1.67477 1.83571 2.46576 2.58027 3.38610 3.43593 3.76631 3.81041 3.83586 3.89944 4.07285 4.16738 4.19534 4.28201 4.29473 4.36585 4.40200 4.46722 4.54024 4.57377 4.58846 4.63282 4.79657 4.82798 4.83305 4.91639 4.92207 4.96311 5.07319 5.10333 5.17469 5.21933 5.29698 5.35682 5.50498 5.53422 5.62682 5.64565 5.72001 6.15688 6.22517 6.33019 6.91731 7.07877 7.39716 8.18527 8.40923 9.32544 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011813 B = 0.003244 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.608018 B = 8627.921259 C =10015.934117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.172 3.828 3 H 0.032 0.968 4 N -0.731 5.731 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.959 3.041 10 H -0.270 1.270 11 H -0.296 1.296 12 H -0.297 1.297 13 C -0.079 4.079 14 C -0.115 4.115 15 C 0.118 3.882 16 N -0.586 5.586 17 C 0.603 3.397 18 O -0.559 6.559 19 C -0.055 4.055 20 C 0.067 3.933 21 N -0.520 5.520 22 C 0.087 3.913 23 C 0.631 3.369 24 O -0.612 6.612 25 N -0.518 5.518 26 C 0.098 3.902 27 C 0.115 3.885 28 C -0.119 4.119 29 H 0.045 0.955 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.374 0.626 33 H 0.248 0.752 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.231 0.769 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -2.533 -21.156 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.064 3.936 3 H 0.050 0.950 4 N -0.372 5.372 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.264 4.264 8 N -0.617 5.617 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.223 1.223 12 H -0.224 1.224 13 C -0.098 4.098 14 C -0.154 4.154 15 C -0.004 4.004 16 N -0.317 5.317 17 C 0.388 3.612 18 O -0.437 6.437 19 C -0.163 4.163 20 C -0.061 4.061 21 N -0.236 5.236 22 C -0.053 4.053 23 C 0.334 3.666 24 O -0.493 6.493 25 N -0.238 5.238 26 C -0.044 4.044 27 C -0.007 4.007 28 C -0.157 4.157 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.206 0.794 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.247 0.753 40 H 0.097 0.903 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.115 0.885 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.219 -1.666 -21.327 21.805 hybrid contribution 0.316 0.340 1.611 1.676 sum 4.535 -1.327 -19.717 20.275 Atomic orbital electron populations 1.22359 0.97939 1.00917 1.00511 1.20451 0.92557 0.94649 0.85948 0.95003 1.42572 1.78281 1.10273 1.06033 1.19559 1.34129 0.93863 0.88551 0.91386 1.25352 1.03493 0.96780 1.00809 1.69785 1.53005 1.09885 1.29034 0.85269 0.76636 0.78253 0.80840 1.19492 1.22317 1.22436 1.21264 0.94639 1.00019 0.93923 1.21738 0.96179 1.00180 0.97280 1.21806 0.98276 0.97768 0.82558 1.48171 1.07730 1.59127 1.16720 1.16873 0.84144 0.77209 0.82927 1.90837 1.74856 1.48184 1.29809 1.19754 0.92014 0.90475 1.14048 1.22393 0.80911 1.00068 1.02700 1.45063 1.08915 1.12702 1.56890 1.22176 0.83852 0.94295 1.04973 1.16360 0.83305 0.83268 0.83714 1.90991 1.35992 1.62041 1.60317 1.45337 1.05745 1.14143 1.58608 1.21851 1.01635 0.79899 1.00970 1.21795 0.77630 1.02268 0.98983 1.21953 1.02258 0.98943 0.92538 0.93619 0.95395 0.90643 0.79390 0.94266 0.90785 0.93342 0.92087 0.88881 0.89894 0.75290 0.90263 0.87854 0.87754 0.90757 0.89343 0.89287 0.89046 0.89060 0.88455 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 9.14 71.98 0.66 -4.34 16 2 C 0.17 6.06 2.47 44.99 0.11 6.17 16 3 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 4 N -0.73 -34.08 4.41 -322.93 -1.42 -35.50 16 5 C -0.23 -12.22 9.93 84.03 0.83 -11.39 16 6 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 7 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 8 N -0.97 -57.15 13.06 21.65 0.28 -56.87 16 9 Si 0.96 45.66 29.55 68.60 2.03 47.69 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 13 C -0.08 -2.10 1.79 -10.76 -0.02 -2.12 16 14 C -0.12 -3.17 5.22 30.67 0.16 -3.01 16 15 C 0.12 2.41 6.35 86.36 0.55 2.96 16 16 N -0.59 -11.77 2.97 -823.62 -2.45 -14.21 16 17 C 0.60 13.75 7.06 86.44 0.61 14.36 16 18 O -0.56 -16.01 16.55 -4.36 -0.07 -16.09 16 19 C -0.06 -1.18 4.66 39.35 0.18 -1.00 16 20 C 0.07 1.04 11.20 83.17 0.93 1.97 16 21 N -0.52 -9.80 3.12 -679.64 -2.12 -11.92 16 22 C 0.09 0.94 11.16 127.77 1.43 2.36 16 23 C 0.63 17.42 8.49 179.11 1.52 18.95 16 24 O -0.61 -21.51 17.35 -4.45 -0.08 -21.59 16 25 N -0.52 -12.90 3.21 -667.06 -2.14 -15.04 16 26 C 0.10 2.16 10.92 127.77 1.39 3.56 16 27 C 0.11 2.08 6.42 86.36 0.55 2.64 16 28 C -0.12 -2.40 5.04 30.67 0.15 -2.24 16 29 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.83 6.40 -2.39 -0.02 1.82 16 32 H 0.37 18.63 7.58 -92.71 -0.70 17.93 16 33 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 2.10 7.41 -2.39 -0.02 2.08 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.70 6.18 -2.39 -0.01 1.69 16 39 H 0.23 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.08 1.14 7.68 -2.39 -0.02 1.12 16 41 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.09 1.92 8.08 -2.38 -0.02 1.90 16 45 H 0.09 1.81 7.90 -2.39 -0.02 1.79 16 46 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.09 1.75 7.04 -2.39 -0.02 1.73 16 48 H 0.10 1.69 6.36 -2.39 -0.02 1.68 16 49 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -76.24 395.21 3.81 -72.43 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.25 Total: 25.80 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 9.54 Total: 25.31 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -7.85 Total: -133.55 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.15 Total: -37.68 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -76.24 3.81 -72.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714812772.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.302 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds