Wall clock time and date at job start Tue Mar 31 2020 19:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47050 * 2 1 4 4 N 1.46503 * 109.47323 * 239.99853 * 2 1 3 5 5 C 1.36935 * 119.99931 * 84.99659 * 4 2 1 6 6 H 1.08004 * 120.00132 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00058 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99929 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47097 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46754 * 120.00728 * 9 7 5 12 12 H 1.48498 * 109.47274 * 240.00342 * 9 7 5 13 13 C 1.53001 * 109.46995 * 120.00098 * 2 1 3 14 14 C 1.53041 * 109.45965 * 60.02514 * 13 2 1 15 15 C 1.53197 * 109.31123 * 178.59916 * 14 13 2 16 16 N 1.46932 * 108.76073 * 54.65697 * 15 14 13 17 17 C 1.34776 * 120.62540 * 126.36165 * 16 15 14 18 18 O 1.21710 * 119.99855 * 175.02153 * 17 16 15 19 19 C 1.46655 * 120.00405 * 355.02533 * 17 16 15 20 20 C 1.35149 * 126.38026 * 87.57789 * 19 17 16 21 21 N 1.37011 * 107.87735 * 179.89989 * 20 19 17 22 22 C 1.46498 * 125.65239 * 180.10259 * 21 20 19 23 23 C 1.34621 * 108.69626 * 0.37127 * 21 20 19 24 24 O 1.21731 * 125.72458 * 179.79394 * 23 21 20 25 25 N 1.34759 * 108.54837 * 359.77007 * 23 21 20 26 26 C 1.46500 * 126.18270 * 180.02562 * 25 23 21 27 27 C 1.46922 * 118.73880 * 306.38124 * 16 15 14 28 28 C 1.53043 * 109.45990 * 299.97047 * 13 2 1 29 29 H 1.08996 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47100 * 59.99985 * 1 2 3 31 31 H 1.09002 * 109.47121 * 300.00321 * 1 2 3 32 32 H 0.96998 * 119.99699 * 265.00499 * 4 2 1 33 33 H 0.96994 * 119.99640 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.45802 * 179.97438 * 13 2 1 35 35 H 1.08999 * 109.49743 * 298.56454 * 14 13 2 36 36 H 1.08996 * 109.49674 * 58.66848 * 14 13 2 37 37 H 1.08997 * 109.60074 * 294.87120 * 15 14 13 38 38 H 1.08997 * 109.70077 * 174.50172 * 15 14 13 39 39 H 1.08005 * 126.06012 * 359.97438 * 20 19 17 40 40 H 1.08996 * 109.47414 * 180.28325 * 22 21 20 41 41 H 1.09000 * 109.46891 * 300.28366 * 22 21 20 42 42 H 1.09004 * 109.46768 * 60.28072 * 22 21 20 43 43 H 1.08996 * 109.46716 * 270.00002 * 26 25 23 44 44 H 1.08997 * 109.47142 * 30.00473 * 26 25 23 45 45 H 1.09001 * 109.46833 * 149.99836 * 26 25 23 46 46 H 1.08998 * 109.58586 * 293.81995 * 27 16 15 47 47 H 1.09003 * 109.70043 * 173.47081 * 27 16 15 48 48 H 1.09001 * 109.49938 * 301.33729 * 28 13 2 49 49 H 1.09003 * 109.49799 * 61.40181 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0076 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6124 -0.6618 -3.5090 8 7 2.9255 -1.9388 -3.4498 9 14 2.7914 0.2702 -5.1180 10 1 2.3773 1.6826 -4.9205 11 1 4.2085 0.2273 -5.5598 12 1 1.9312 -0.3582 -6.1525 13 6 2.0400 -0.7213 1.2492 14 6 1.5302 -2.1643 1.2486 15 6 2.0713 -2.8933 2.4826 16 7 1.7085 -2.1258 3.6818 17 6 1.0550 -2.7154 4.7026 18 8 0.8400 -2.0944 5.7270 19 6 0.6031 -4.1051 4.5790 20 6 1.3209 -5.2109 4.8765 21 7 0.5342 -6.3037 4.6232 22 6 0.9279 -7.7018 4.8137 23 6 -0.6585 -5.8799 4.1647 24 8 -1.5897 -6.5937 3.8403 25 7 -0.6487 -4.5329 4.1256 26 6 -1.7504 -3.6723 3.6877 27 6 2.0711 -0.7036 3.7469 28 6 1.5303 0.0008 2.4987 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 3.2488 -2.3960 -4.2418 34 1 3.1300 -0.7216 1.2488 35 1 0.4405 -2.1652 1.2741 36 1 1.8740 -2.6712 0.3470 37 1 3.1563 -2.9725 2.4139 38 1 1.6350 -3.8904 2.5410 39 1 2.3344 -5.2297 5.2491 40 1 0.1031 -8.3540 4.5266 41 1 1.7976 -7.9219 4.1946 42 1 1.1761 -7.8698 5.8617 43 1 -1.6649 -3.4895 2.6165 44 1 -2.7006 -4.1633 3.8978 45 1 -1.7054 -2.7239 4.2229 46 1 3.1560 -0.6043 3.7813 47 1 1.6345 -0.2534 4.6385 48 1 1.8741 1.0351 2.4869 49 1 0.4405 -0.0202 2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714812775.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:21 Heat of formation + Delta-G solvation = 1.955982 kcal Electronic energy + Delta-G solvation = -30469.386704 eV Core-core repulsion = 26433.424972 eV Total energy + Delta-G solvation = -4035.961733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.66034 -40.19219 -38.13092 -36.93454 -35.65675 -35.48736 -33.01904 -31.51777 -30.73217 -30.54473 -28.58000 -27.93878 -26.39212 -25.45618 -24.16035 -23.22376 -23.05341 -21.38698 -20.95808 -19.81778 -18.76860 -17.78398 -17.35675 -17.08414 -16.68302 -16.20431 -15.67399 -15.36395 -14.97700 -14.83203 -14.46293 -14.39711 -14.36962 -14.03614 -13.83202 -13.58957 -13.21777 -13.15988 -13.06261 -12.77312 -12.68564 -12.60385 -12.24525 -12.07834 -11.71994 -11.64163 -11.42547 -11.08148 -10.89063 -10.77202 -10.65818 -10.39741 -10.33104 -10.24569 -10.15334 -10.05625 -9.74351 -9.59186 -8.94726 -8.76848 -7.98541 -6.98234 -5.79915 -3.07762 1.55786 1.70583 2.38539 2.65583 2.70780 3.28461 3.40771 3.46948 3.48764 4.24599 4.53823 4.55825 4.76686 4.80852 4.81216 4.94079 4.97151 5.00137 5.11936 5.14101 5.14847 5.24655 5.31001 5.42093 5.42834 5.51251 5.57989 5.68612 5.72408 5.75379 5.90059 5.91936 6.06986 6.07724 6.13076 6.18576 6.24997 6.39055 6.43193 6.48312 6.61429 6.71090 6.87816 7.00832 7.10569 7.15832 7.68534 7.83758 8.03721 8.39608 9.50852 10.08869 10.43054 11.43022 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.002958 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.006426 B = 9463.436321 C =10358.871867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.046 0.954 4 N -0.725 5.725 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.090 4.090 14 C -0.127 4.127 15 C 0.106 3.894 16 N -0.591 5.591 17 C 0.594 3.406 18 O -0.529 6.529 19 C -0.022 4.022 20 C 0.039 3.961 21 N -0.526 5.526 22 C 0.095 3.905 23 C 0.651 3.349 24 O -0.567 6.567 25 N -0.514 5.514 26 C 0.099 3.901 27 C 0.113 3.887 28 C -0.128 4.128 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.188 0.812 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -5.817 19.441 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.064 0.936 4 N -0.367 5.367 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.110 4.110 14 C -0.165 4.165 15 C -0.016 4.016 16 N -0.323 5.323 17 C 0.379 3.621 18 O -0.405 6.405 19 C -0.130 4.130 20 C -0.089 4.089 21 N -0.243 5.243 22 C -0.047 4.047 23 C 0.353 3.647 24 O -0.445 6.445 25 N -0.236 5.236 26 C -0.042 4.042 27 C -0.009 4.009 28 C -0.167 4.167 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.205 0.795 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.095 0.905 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.400 -5.885 19.580 20.585 hybrid contribution 0.269 0.118 -1.113 1.151 sum -2.131 -5.767 18.466 19.463 Atomic orbital electron populations 1.22534 0.99616 1.00761 0.99767 1.20186 0.91729 0.95201 0.86069 0.93580 1.42496 1.78149 1.10706 1.05341 1.19284 1.36123 0.93869 0.87406 0.91241 1.24713 1.02308 0.95978 0.98008 1.69654 1.51196 1.08652 1.28758 0.86155 0.77287 0.78817 0.84168 1.20616 1.21928 1.21937 1.21407 1.00461 0.94411 0.94690 1.21972 1.01182 0.96323 0.97036 1.21915 1.00640 0.95036 0.84040 1.48143 1.55799 1.11241 1.17156 1.16886 0.78144 0.83765 0.83346 1.90855 1.56915 1.64113 1.28581 1.19710 0.87628 0.94308 1.11399 1.21704 0.98220 0.83275 1.05685 1.44799 1.13466 1.07567 1.58489 1.21846 1.02450 0.77742 1.02627 1.16082 0.83743 0.81906 0.82940 1.91042 1.37174 1.58100 1.58159 1.45250 1.12994 1.06323 1.58995 1.21814 0.87831 0.93661 1.00922 1.21731 1.00285 0.79131 0.99766 1.22028 1.01544 0.99466 0.93662 0.93420 0.93137 0.94411 0.78222 0.93616 0.90899 0.91473 0.89486 0.90667 0.90094 0.79455 0.88789 0.90330 0.90557 0.90678 0.89306 0.89918 0.91049 0.89098 0.90471 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 8.79 37.16 0.33 -2.48 16 2 C 0.18 3.21 2.72 -67.93 -0.18 3.03 16 3 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 4 N -0.72 -16.95 5.04 -53.42 -0.27 -17.22 16 5 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 9 Si 0.90 21.97 29.55 -169.99 -5.02 16.94 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C -0.09 -1.27 2.14 -90.58 -0.19 -1.46 16 14 C -0.13 -1.71 4.81 -26.61 -0.13 -1.84 16 15 C 0.11 1.16 6.35 -3.70 -0.02 1.13 16 16 N -0.59 -6.54 2.97 -174.32 -0.52 -7.06 16 17 C 0.59 7.25 7.06 -12.86 -0.09 7.16 16 18 O -0.53 -7.97 16.55 5.18 0.09 -7.88 16 19 C -0.02 -0.25 4.66 -81.91 -0.38 -0.63 16 20 C 0.04 0.35 11.20 -16.34 -0.18 0.17 16 21 N -0.53 -5.33 3.12 -128.78 -0.40 -5.73 16 22 C 0.09 0.60 11.16 59.85 0.67 1.27 16 23 C 0.65 8.84 8.49 -87.07 -0.74 8.10 16 24 O -0.57 -9.50 17.35 5.16 0.09 -9.41 16 25 N -0.51 -6.33 3.21 -124.83 -0.40 -6.73 16 26 C 0.10 1.04 10.92 59.85 0.65 1.69 16 27 C 0.11 1.19 6.41 -3.72 -0.02 1.17 16 28 C -0.13 -1.46 4.97 -26.61 -0.13 -1.60 16 29 H 0.05 0.81 6.46 -51.93 -0.34 0.47 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.53 6.46 -51.93 -0.34 0.19 16 32 H 0.38 9.40 6.04 -40.82 -0.25 9.15 16 33 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.93 6.51 -51.93 -0.34 0.59 16 36 H 0.09 1.39 6.46 -51.93 -0.34 1.05 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.87 6.18 -51.93 -0.32 0.55 16 39 H 0.19 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.09 0.69 7.68 -51.93 -0.40 0.29 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 45 H 0.08 0.81 7.90 -51.93 -0.41 0.40 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 1.00 7.04 -51.93 -0.37 0.63 16 48 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.07 0.83 6.51 -51.93 -0.34 0.49 16 LS Contribution 390.03 15.07 5.88 5.88 Total: -1.00 -34.63 390.03 -8.13 -42.76 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.61 Total: 6.27 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -0.68 Total: 8.78 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.87 Total: -63.34 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.18 Total: -17.30 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.63 -8.13 -42.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714812775.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.716 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds