Wall clock time and date at job start Tue Mar 31 2020 20:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46959 * 2 1 4 4 C 1.53004 * 109.47184 * 240.00103 * 2 1 3 5 5 N 1.46497 * 109.47032 * 65.00023 * 4 2 1 6 6 C 1.36937 * 119.99806 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00002 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00115 * 180.02562 * 6 5 4 9 9 N 1.31626 * 119.99679 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00334 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46829 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47514 * 119.99440 * 10 8 6 13 13 H 1.48496 * 109.47277 * 240.00038 * 10 8 6 14 14 C 1.52999 * 109.47115 * 120.00238 * 2 1 3 15 15 N 1.46505 * 109.46939 * 294.99537 * 14 2 1 16 16 C 1.34779 * 119.99656 * 179.97438 * 15 14 2 17 17 O 1.21270 * 120.00394 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99317 * 180.02562 * 16 15 14 19 19 H 1.09004 * 109.47560 * 60.00403 * 18 16 15 20 20 C 1.53002 * 109.47186 * 299.99593 * 18 16 15 21 21 C 1.53008 * 109.46612 * 180.02562 * 18 16 15 22 22 C 1.53004 * 109.46980 * 184.99975 * 21 18 16 23 23 C 1.50693 * 109.47123 * 179.97438 * 22 21 18 24 24 C 1.38250 * 119.97504 * 90.00147 * 23 22 21 25 25 C 1.38196 * 120.02428 * 180.23537 * 24 23 22 26 26 C 1.38457 * 119.97339 * 359.50816 * 25 24 23 27 27 F 1.35103 * 120.02362 * 180.21068 * 26 25 24 28 28 C 1.38456 * 119.94977 * 0.48564 * 26 25 24 29 29 C 1.38199 * 119.97506 * 359.75344 * 28 26 25 30 30 H 1.09000 * 109.47339 * 59.99995 * 1 2 3 31 31 H 1.08997 * 109.46959 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46742 * 299.99949 * 1 2 3 33 33 H 1.08994 * 109.47184 * 185.00149 * 4 2 1 34 34 H 1.09003 * 109.47066 * 304.99883 * 4 2 1 35 35 H 0.96997 * 120.00179 * 359.97438 * 5 4 2 36 36 H 0.96994 * 119.99737 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47008 * 175.00388 * 14 2 1 38 38 H 1.09003 * 109.47260 * 54.99859 * 14 2 1 39 39 H 0.96991 * 119.99916 * 0.02562 * 15 14 2 40 40 H 1.08999 * 109.47120 * 300.00630 * 20 18 16 41 41 H 1.09000 * 109.46643 * 60.00765 * 20 18 16 42 42 H 1.09001 * 109.47216 * 180.02562 * 20 18 16 43 43 H 1.08992 * 109.47233 * 64.99894 * 21 18 16 44 44 H 1.08999 * 109.46739 * 304.99781 * 21 18 16 45 45 H 1.08999 * 109.46918 * 59.99639 * 22 21 18 46 46 H 1.09006 * 109.46837 * 300.00023 * 22 21 18 47 47 H 1.08002 * 119.98396 * 359.94944 * 24 23 22 48 48 H 1.08004 * 120.00978 * 179.72210 * 25 24 23 49 49 H 1.07999 * 120.01335 * 179.72141 * 28 26 25 50 50 H 1.07999 * 119.98943 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6525 0.0354 -2.4424 6 6 2.0011 -0.4208 -3.6856 7 1 2.5621 -1.3381 -3.7864 8 6 1.6344 0.2964 -4.8161 9 7 0.9511 1.4147 -4.6931 10 14 2.1105 -0.3254 -6.5119 11 1 2.8705 -1.5943 -6.3785 12 1 0.8839 -0.5646 -7.3140 13 1 2.9564 0.6885 -7.1914 14 6 2.0400 -0.7213 1.2492 15 7 1.6525 0.0354 2.4424 16 6 1.9956 -0.4137 3.6660 17 8 2.6255 -1.4437 3.7793 18 6 1.5965 0.3644 4.8933 19 1 0.5101 0.4427 4.9366 20 6 2.2067 1.7661 4.8294 21 6 2.1066 -0.3568 6.1426 22 6 1.5962 0.3641 7.3918 23 6 2.0981 -0.3466 8.6222 24 6 3.3060 0.0191 9.1867 25 6 3.7695 -0.6353 10.3122 26 6 3.0189 -1.6505 10.8805 27 9 3.4691 -2.2880 11.9833 28 6 1.8093 -2.0158 10.3143 29 6 1.3501 -1.3634 9.1859 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7995 -1.2056 34 1 1.6054 -1.7198 -1.2952 35 1 1.1483 0.8591 -2.3518 36 1 0.6951 1.9160 -5.4830 37 1 3.1263 -0.7994 1.2056 38 1 1.6054 -1.7199 1.2951 39 1 1.1484 0.8590 2.3518 40 1 3.2930 1.6878 4.7861 41 1 1.8436 2.2801 3.9394 42 1 1.9184 2.3287 5.7173 43 1 3.1966 -0.3565 6.1427 44 1 1.7436 -1.3846 6.1423 45 1 0.5062 0.3638 7.3916 46 1 1.9592 1.3920 7.3919 47 1 3.8897 0.8133 8.7452 48 1 4.7153 -0.3524 10.7504 49 1 1.2251 -2.8106 10.7541 50 1 0.4068 -1.6484 8.7439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715234077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:28 Heat of formation + Delta-G solvation = -79.204280 kcal Electronic energy + Delta-G solvation = -27401.199918 eV Core-core repulsion = 23341.798850 eV Total energy + Delta-G solvation = -4059.401067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.25339 -40.18673 -39.52290 -37.01295 -35.77979 -34.39538 -32.79271 -32.05953 -31.56332 -30.03326 -28.39746 -26.63885 -25.72261 -25.05537 -23.48796 -23.01037 -22.12200 -21.16992 -20.32882 -19.56509 -18.08140 -17.45453 -16.86184 -16.81959 -16.26393 -15.94842 -15.78694 -15.71795 -15.06421 -14.65202 -14.45708 -14.28847 -14.02591 -13.95030 -13.77222 -13.70349 -13.43635 -13.06904 -13.01103 -12.83696 -12.54565 -12.31349 -12.11205 -12.08920 -11.90604 -11.78564 -11.45257 -11.19981 -11.07301 -10.96746 -10.93164 -10.71972 -10.58047 -10.42687 -10.04825 -9.79764 -9.64787 -9.54013 -9.02571 -8.93142 -8.89414 -6.93530 -5.78654 -3.06905 0.71087 0.80140 2.60672 3.07366 3.22232 3.42543 3.48679 3.50635 3.86513 4.20875 4.25649 4.46726 4.47613 4.57522 4.58378 4.68367 4.78986 4.82999 5.00709 5.06055 5.09669 5.18104 5.20477 5.26269 5.36987 5.44657 5.48988 5.50015 5.56635 5.62052 5.67870 5.70410 5.79854 5.80938 5.87419 5.95025 5.98759 6.02200 6.10041 6.14108 6.23089 6.37549 6.47249 6.48819 6.63357 6.75819 6.85264 7.48471 7.69937 8.19836 8.40582 9.52001 10.09205 10.44020 11.44426 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.036667 B = 0.001416 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.442886 B =19767.131822 C =19987.940152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.724 5.724 16 C 0.513 3.487 17 O -0.543 6.543 18 C -0.111 4.111 19 H 0.098 0.902 20 C -0.148 4.148 21 C -0.094 4.094 22 C -0.083 4.083 23 C -0.087 4.087 24 C -0.088 4.088 25 C -0.151 4.151 26 C 0.089 3.911 27 F -0.142 7.142 28 C -0.151 4.151 29 C -0.088 4.088 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.400 0.600 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 0.504 32.287 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.376 5.376 16 C 0.299 3.701 17 O -0.420 6.420 18 C -0.133 4.133 19 H 0.116 0.884 20 C -0.205 4.205 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.088 4.088 24 C -0.106 4.106 25 C -0.170 4.170 26 C 0.070 3.930 27 F -0.121 7.121 28 C -0.170 4.170 29 C -0.106 4.106 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.234 0.766 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.151 0.849 48 H 0.152 0.848 49 H 0.152 0.848 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.200 -0.387 32.255 32.258 hybrid contribution -0.086 0.215 -0.848 0.879 sum 0.114 -0.172 31.407 31.408 Atomic orbital electron populations 1.21787 0.94691 1.01916 1.01450 1.21548 0.96684 1.00466 0.94232 0.90578 1.20578 0.96610 0.94211 0.85403 1.42340 1.66915 1.27677 1.00590 1.19296 1.28587 1.05420 0.83665 0.91091 1.24733 1.01033 0.97401 0.97855 1.69667 1.43679 1.16604 1.28369 0.86110 0.77596 0.77849 0.84613 1.20536 1.21875 1.21880 1.21412 1.00083 0.95267 0.83033 1.46098 1.57644 1.27850 1.06011 1.20602 0.79329 0.85543 0.84649 1.90704 1.39901 1.24629 1.86758 1.21340 1.02292 0.96283 0.93360 0.88442 1.21854 1.01624 0.94258 1.02767 1.21384 1.01785 0.99420 0.90626 1.20719 1.01135 0.99072 0.91075 1.19975 0.94920 0.96862 0.97013 1.20951 0.95490 0.99434 0.94702 1.21162 1.00939 0.96926 0.97995 1.17749 0.94726 0.94712 0.85779 1.91501 1.89104 1.80708 1.50789 1.21163 0.95729 1.02161 0.97957 1.20958 1.00020 0.94939 0.94656 0.91158 0.92844 0.93942 0.96144 0.96018 0.78225 0.93595 0.91445 0.91431 0.76562 0.91916 0.91930 0.91206 0.90959 0.90787 0.90590 0.90314 0.84935 0.84782 0.84780 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.94 37.16 0.33 -1.69 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 5 N -0.73 -18.14 5.33 -59.91 -0.32 -18.46 16 6 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 14 C 0.13 1.69 5.06 -4.04 -0.02 1.67 16 15 N -0.72 -7.90 5.18 -60.29 -0.31 -8.22 16 16 C 0.51 5.93 7.15 -10.98 -0.08 5.85 16 17 O -0.54 -8.56 15.92 5.57 0.09 -8.47 16 18 C -0.11 -0.82 2.73 -91.77 -0.25 -1.07 16 19 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 20 C -0.15 -0.87 8.84 37.16 0.33 -0.54 16 21 C -0.09 -0.71 4.01 -26.73 -0.11 -0.82 16 22 C -0.08 -0.44 5.10 -27.88 -0.14 -0.58 16 23 C -0.09 -0.58 5.13 -104.62 -0.54 -1.11 16 24 C -0.09 -0.57 9.70 -39.59 -0.38 -0.95 16 25 C -0.15 -1.09 10.03 -39.52 -0.40 -1.49 16 26 C 0.09 0.74 7.30 -39.42 -0.29 0.46 16 27 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 28 C -0.15 -1.10 10.03 -39.52 -0.40 -1.49 16 29 C -0.09 -0.58 9.70 -39.59 -0.38 -0.96 16 30 H 0.07 1.19 7.18 -51.93 -0.37 0.81 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.38 9.88 6.85 -40.82 -0.28 9.60 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 3.45 7.07 -40.82 -0.29 3.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.35 7.56 -51.93 -0.39 -0.05 16 42 H 0.07 0.29 6.56 -51.93 -0.34 -0.05 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.68 7.95 -51.93 -0.41 0.26 16 45 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 46 H 0.08 0.33 6.51 -51.93 -0.34 -0.01 16 47 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 49 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 50 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 411.56 15.07 6.20 6.20 Total: -1.00 -33.26 411.56 -9.68 -42.93 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.26 Total: 5.97 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.82 Total: -8.79 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.09 Total: -53.88 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.26 -9.68 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715234077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.270 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds