Wall clock time and date at job start Tue Mar 31 2020 20:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46959 * 2 1 4 4 C 1.53004 * 109.47184 * 240.00103 * 2 1 3 5 5 N 1.46497 * 109.47032 * 65.00023 * 4 2 1 6 6 C 1.36937 * 119.99806 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00002 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00115 * 180.02562 * 6 5 4 9 9 N 1.31626 * 119.99679 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00334 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46829 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47514 * 119.99440 * 10 8 6 13 13 H 1.48496 * 109.47277 * 240.00038 * 10 8 6 14 14 C 1.52999 * 109.47115 * 120.00238 * 2 1 3 15 15 N 1.46505 * 109.46939 * 294.99537 * 14 2 1 16 16 C 1.34779 * 119.99656 * 179.97438 * 15 14 2 17 17 O 1.21270 * 120.00394 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99317 * 180.02562 * 16 15 14 19 19 H 1.09004 * 109.47560 * 60.00403 * 18 16 15 20 20 C 1.53002 * 109.47186 * 299.99593 * 18 16 15 21 21 C 1.53008 * 109.46612 * 180.02562 * 18 16 15 22 22 C 1.53004 * 109.46980 * 184.99975 * 21 18 16 23 23 C 1.50693 * 109.47123 * 179.97438 * 22 21 18 24 24 C 1.38250 * 119.97504 * 90.00147 * 23 22 21 25 25 C 1.38196 * 120.02428 * 180.23537 * 24 23 22 26 26 C 1.38457 * 119.97339 * 359.50816 * 25 24 23 27 27 F 1.35103 * 120.02362 * 180.21068 * 26 25 24 28 28 C 1.38456 * 119.94977 * 0.48564 * 26 25 24 29 29 C 1.38199 * 119.97506 * 359.75344 * 28 26 25 30 30 H 1.09000 * 109.47339 * 59.99995 * 1 2 3 31 31 H 1.08997 * 109.46959 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46742 * 299.99949 * 1 2 3 33 33 H 1.08994 * 109.47184 * 185.00149 * 4 2 1 34 34 H 1.09003 * 109.47066 * 304.99883 * 4 2 1 35 35 H 0.96997 * 120.00179 * 359.97438 * 5 4 2 36 36 H 0.96994 * 119.99737 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47008 * 175.00388 * 14 2 1 38 38 H 1.09003 * 109.47260 * 54.99859 * 14 2 1 39 39 H 0.96991 * 119.99916 * 0.02562 * 15 14 2 40 40 H 1.08999 * 109.47120 * 300.00630 * 20 18 16 41 41 H 1.09000 * 109.46643 * 60.00765 * 20 18 16 42 42 H 1.09001 * 109.47216 * 180.02562 * 20 18 16 43 43 H 1.08992 * 109.47233 * 64.99894 * 21 18 16 44 44 H 1.08999 * 109.46739 * 304.99781 * 21 18 16 45 45 H 1.08999 * 109.46918 * 59.99639 * 22 21 18 46 46 H 1.09006 * 109.46837 * 300.00023 * 22 21 18 47 47 H 1.08002 * 119.98396 * 359.94944 * 24 23 22 48 48 H 1.08004 * 120.00978 * 179.72210 * 25 24 23 49 49 H 1.07999 * 120.01335 * 179.72141 * 28 26 25 50 50 H 1.07999 * 119.98943 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6525 0.0354 -2.4424 6 6 2.0011 -0.4208 -3.6856 7 1 2.5621 -1.3381 -3.7864 8 6 1.6344 0.2964 -4.8161 9 7 0.9511 1.4147 -4.6931 10 14 2.1105 -0.3254 -6.5119 11 1 2.8705 -1.5943 -6.3785 12 1 0.8839 -0.5646 -7.3140 13 1 2.9564 0.6885 -7.1914 14 6 2.0400 -0.7213 1.2492 15 7 1.6525 0.0354 2.4424 16 6 1.9956 -0.4137 3.6660 17 8 2.6255 -1.4437 3.7793 18 6 1.5965 0.3644 4.8933 19 1 0.5101 0.4427 4.9366 20 6 2.2067 1.7661 4.8294 21 6 2.1066 -0.3568 6.1426 22 6 1.5962 0.3641 7.3918 23 6 2.0981 -0.3466 8.6222 24 6 3.3060 0.0191 9.1867 25 6 3.7695 -0.6353 10.3122 26 6 3.0189 -1.6505 10.8805 27 9 3.4691 -2.2880 11.9833 28 6 1.8093 -2.0158 10.3143 29 6 1.3501 -1.3634 9.1859 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7995 -1.2056 34 1 1.6054 -1.7198 -1.2952 35 1 1.1483 0.8591 -2.3518 36 1 0.6951 1.9160 -5.4830 37 1 3.1263 -0.7994 1.2056 38 1 1.6054 -1.7199 1.2951 39 1 1.1484 0.8590 2.3518 40 1 3.2930 1.6878 4.7861 41 1 1.8436 2.2801 3.9394 42 1 1.9184 2.3287 5.7173 43 1 3.1966 -0.3565 6.1427 44 1 1.7436 -1.3846 6.1423 45 1 0.5062 0.3638 7.3916 46 1 1.9592 1.3920 7.3919 47 1 3.8897 0.8133 8.7452 48 1 4.7153 -0.3524 10.7504 49 1 1.2251 -2.8106 10.7541 50 1 0.4068 -1.6484 8.7439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715234077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:27 Heat of formation + Delta-G solvation = -98.318327 kcal Electronic energy + Delta-G solvation = -27402.028765 eV Core-core repulsion = 23341.798850 eV Total energy + Delta-G solvation = -4060.229915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.89398 -41.04339 -40.09025 -38.31462 -36.49370 -35.93419 -34.14905 -32.90688 -32.05476 -31.76671 -28.96470 -27.77059 -27.13208 -25.94146 -24.47829 -23.98375 -23.14052 -21.80358 -21.46729 -20.57002 -19.18369 -18.64049 -17.96449 -17.39524 -17.27750 -16.68530 -16.61888 -16.56155 -16.26997 -15.94221 -15.47585 -15.27197 -15.15888 -14.91457 -14.65362 -14.45101 -14.34435 -14.21019 -13.97406 -13.62482 -13.56801 -13.52523 -13.24405 -12.95940 -12.83124 -12.56854 -12.44615 -12.37343 -12.17125 -12.12680 -11.98796 -11.95406 -11.74198 -11.68138 -11.62611 -11.47463 -10.95587 -10.70028 -10.04652 -10.03748 -9.47394 -8.99278 -7.95898 -5.23914 0.17207 0.30379 1.48019 1.48114 1.58396 1.71321 2.23328 2.56666 2.64353 3.32713 3.38066 3.69717 3.73928 3.78249 3.79788 3.96875 3.98255 4.05344 4.09397 4.19020 4.32958 4.34624 4.38050 4.54361 4.55878 4.59459 4.64873 4.71829 4.80437 4.83893 4.94376 4.97567 5.04362 5.05164 5.07531 5.13017 5.13335 5.17355 5.19643 5.31011 5.34706 5.40607 5.44567 5.48501 5.50351 5.53689 5.66355 5.97578 6.27175 6.62180 7.31928 7.34155 8.09091 8.33780 9.27654 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.036667 B = 0.001416 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.442886 B =19767.131822 C =19987.940152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.156 3.844 5 N -0.740 5.740 6 C -0.248 4.248 7 H 0.073 0.927 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.138 3.862 15 N -0.715 5.715 16 C 0.508 3.492 17 O -0.590 6.590 18 C -0.101 4.101 19 H 0.126 0.874 20 C -0.146 4.146 21 C -0.089 4.089 22 C -0.074 4.074 23 C -0.093 4.093 24 C -0.093 4.093 25 C -0.160 4.160 26 C 0.063 3.937 27 F -0.154 7.154 28 C -0.160 4.160 29 C -0.094 4.094 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.377 0.623 36 H 0.252 0.748 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.414 0.586 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.152 0.848 48 H 0.145 0.855 49 H 0.144 0.856 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 1.504 33.044 33.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.098 0.902 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.380 4.380 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.013 3.987 15 N -0.367 5.367 16 C 0.296 3.704 17 O -0.471 6.471 18 C -0.122 4.122 19 H 0.143 0.857 20 C -0.203 4.203 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.093 4.093 24 C -0.111 4.111 25 C -0.178 4.178 26 C 0.044 3.956 27 F -0.133 7.133 28 C -0.179 4.179 29 C -0.112 4.112 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.251 0.749 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.169 0.831 48 H 0.162 0.838 49 H 0.162 0.838 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.534 0.616 33.040 33.050 hybrid contribution 0.167 -0.140 -1.047 1.070 sum -0.366 0.476 31.993 31.998 Atomic orbital electron populations 1.21721 0.93790 1.01863 1.01844 1.21323 0.97210 1.00017 0.92673 0.90250 1.20732 0.96440 0.94139 0.85829 1.42495 1.66773 1.27814 1.01284 1.19669 1.27865 1.05293 0.85127 0.90951 1.25514 1.01661 0.97872 1.01400 1.69805 1.45086 1.17801 1.29036 0.85101 0.77116 0.77596 0.80109 1.19338 1.21922 1.21938 1.21085 0.99227 0.95029 0.83384 1.45966 1.57500 1.28059 1.05161 1.21431 0.78165 0.85102 0.85657 1.90689 1.42057 1.26920 1.87410 1.21372 1.03940 0.96263 0.90662 0.85663 1.21886 1.00740 0.93274 1.04430 1.21300 1.00670 0.98791 0.91995 1.20698 1.02135 0.99329 0.88924 1.20232 0.94887 0.96794 0.97391 1.21235 0.95730 0.99742 0.94372 1.21381 1.01375 0.96734 0.98346 1.18067 0.95712 0.95684 0.86112 1.91463 1.89328 1.81066 1.51460 1.21375 0.95589 1.02587 0.98322 1.21235 1.00780 0.94798 0.94373 0.93910 0.93134 0.90310 0.96438 0.96260 0.79028 0.93950 0.92615 0.92181 0.74853 0.93205 0.91207 0.88652 0.92772 0.92802 0.88834 0.88500 0.83077 0.83761 0.83823 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 8.94 71.98 0.64 -3.01 16 2 C -0.09 -2.70 2.46 -10.79 -0.03 -2.72 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.16 6.11 5.65 86.38 0.49 6.60 16 5 N -0.74 -36.97 5.33 -343.45 -1.83 -38.80 16 6 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 7 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 8 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 9 N -0.97 -58.22 13.06 21.65 0.28 -57.94 16 10 Si 0.97 45.98 29.55 68.60 2.03 48.00 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 14 C 0.14 3.56 5.06 86.38 0.44 4.00 16 15 N -0.71 -14.11 5.18 -463.05 -2.40 -16.50 16 16 C 0.51 10.95 7.15 87.66 0.63 11.57 16 17 O -0.59 -18.52 15.92 -3.00 -0.05 -18.56 16 18 C -0.10 -1.20 2.73 -11.54 -0.03 -1.24 16 19 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 20 C -0.15 -1.21 8.84 71.98 0.64 -0.58 16 21 C -0.09 -1.18 4.01 30.60 0.12 -1.06 16 22 C -0.07 -0.55 5.10 29.85 0.15 -0.40 16 23 C -0.09 -1.05 5.13 -19.86 -0.10 -1.15 16 24 C -0.09 -1.07 9.70 22.26 0.22 -0.86 16 25 C -0.16 -2.22 10.03 22.31 0.22 -2.00 16 26 C 0.06 1.06 7.30 22.37 0.16 1.22 16 27 F -0.15 -2.98 17.27 44.97 0.78 -2.20 16 28 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 29 C -0.09 -1.11 9.70 22.26 0.22 -0.90 16 30 H 0.04 1.41 7.18 -2.39 -0.02 1.39 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.55 7.18 -2.39 -0.02 1.53 16 33 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.38 19.63 6.85 -92.71 -0.63 19.00 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.41 5.81 7.07 -92.71 -0.66 5.15 16 40 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.07 0.51 7.56 -2.39 -0.02 0.49 16 42 H 0.09 0.35 6.56 -2.39 -0.02 0.33 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 0.94 7.95 -2.39 -0.02 0.92 16 45 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 46 H 0.10 0.41 6.51 -2.38 -0.02 0.39 16 47 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 48 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 49 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 50 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -73.16 411.56 3.75 -69.41 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.35 Total: 25.81 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.30 Total: -9.21 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -3.95 Total: -113.24 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.56 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -73.16 3.75 -69.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715234077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.911 kcal (2) G-P(sol) polarization free energy of solvation -73.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds