Wall clock time and date at job start Tue Mar 31 2020 19:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00086 * 2 1 3 5 5 H 1.09000 * 109.47521 * 60.00160 * 4 2 1 6 6 C 1.53003 * 109.47332 * 180.02562 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 H 1.09000 * 109.47726 * 299.99386 * 10 8 7 12 12 C 1.52998 * 109.47502 * 60.00087 * 10 8 7 13 13 C 1.53011 * 109.46807 * 179.97438 * 10 8 7 14 14 C 1.50705 * 109.46872 * 174.99984 * 13 10 8 15 15 C 1.38212 * 120.01333 * 264.72343 * 14 13 10 16 16 C 1.38224 * 120.02748 * 179.72290 * 15 14 13 17 17 C 1.38269 * 120.04784 * 0.55314 * 16 15 14 18 18 C 1.38174 * 120.02450 * 359.72437 * 17 16 15 19 19 C 1.38439 * 120.01337 * 85.00128 * 14 13 10 20 20 F 1.35106 * 120.02407 * 359.97438 * 19 14 13 21 21 N 1.46505 * 109.47130 * 300.00074 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47086 * 299.99896 * 1 2 3 32 32 H 1.08994 * 109.46999 * 59.99901 * 1 2 3 33 33 H 1.08998 * 109.47497 * 240.00304 * 2 1 3 34 34 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47225 * 300.00492 * 3 2 1 36 36 H 1.09003 * 109.47030 * 60.00070 * 3 2 1 37 37 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 38 38 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 39 39 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 40 40 H 1.09000 * 109.47518 * 59.99423 * 12 10 8 41 41 H 1.08996 * 109.47584 * 179.97438 * 12 10 8 42 42 H 1.08998 * 109.46815 * 299.99599 * 12 10 8 43 43 H 1.08999 * 109.47078 * 294.99588 * 13 10 8 44 44 H 1.08994 * 109.46854 * 54.99884 * 13 10 8 45 45 H 1.08006 * 119.98706 * 0.02562 * 15 14 13 46 46 H 1.07995 * 119.97973 * 180.29934 * 16 15 14 47 47 H 1.07997 * 119.98706 * 179.74057 * 17 16 15 48 48 H 1.08001 * 120.01494 * 180.02562 * 18 17 16 49 49 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 50 50 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 3.5700 -0.7207 1.2495 7 7 4.0584 -1.3045 2.5013 8 6 5.3834 -1.4077 2.7249 9 8 6.1716 -1.0176 1.8897 10 6 5.8857 -2.0077 4.0128 11 1 5.5218 -1.4185 4.8545 12 6 5.3767 -3.4450 4.1385 13 6 7.4158 -2.0072 4.0130 14 6 7.9180 -2.4928 5.3484 15 6 8.2518 -1.5830 6.3339 16 6 8.7070 -2.0282 7.5607 17 6 8.8399 -3.3835 7.7997 18 6 8.5123 -4.2947 6.8140 19 6 8.0507 -3.8501 5.5865 20 9 7.7296 -4.7402 4.6221 21 7 1.5517 -0.0306 2.4454 22 6 0.3102 -0.3211 2.9447 23 1 -0.3089 -1.0596 2.4570 24 6 -0.1502 0.3291 4.0815 25 7 0.6044 1.2286 4.6762 26 14 -1.8407 -0.0727 4.7672 27 1 -1.7260 -1.1804 5.7495 28 1 -2.4009 1.1278 5.4382 29 1 -2.7392 -0.4849 3.6590 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 3.9337 -1.3099 0.4076 38 1 3.9331 0.3032 1.1601 39 1 3.4280 -1.6162 3.1695 40 1 5.7406 -4.0344 3.2968 41 1 5.7403 -3.8792 5.0698 42 1 4.2867 -3.4458 4.1382 43 1 7.7794 -2.6679 3.2260 44 1 7.7788 -0.9952 3.8344 45 1 8.1522 -0.5239 6.1470 46 1 8.9630 -1.3167 8.3319 47 1 9.1997 -3.7301 8.7572 48 1 8.6158 -5.3534 7.0009 49 1 2.1078 0.6323 2.8837 50 1 0.2825 1.6833 5.4704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715503264.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:52 Heat of formation + Delta-G solvation = -68.986780 kcal Electronic energy + Delta-G solvation = -29540.873690 eV Core-core repulsion = 25481.915686 eV Total energy + Delta-G solvation = -4058.958003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.04585 -39.87393 -39.05008 -37.36504 -34.96401 -33.84924 -32.92093 -31.33496 -30.60370 -30.09449 -27.93885 -26.77467 -26.30853 -24.31989 -23.40141 -22.83418 -22.08721 -21.06765 -19.65134 -18.65117 -17.77004 -17.35587 -16.86883 -16.55569 -16.07792 -15.74046 -15.51649 -15.24726 -14.84218 -14.35912 -14.29848 -13.92269 -13.77832 -13.48050 -13.39771 -13.14300 -13.01646 -12.87537 -12.74043 -12.42548 -12.24012 -12.01421 -11.88526 -11.74065 -11.32950 -11.21616 -11.07459 -11.02915 -10.94435 -10.93441 -10.80298 -10.54197 -10.26392 -10.13347 -9.90181 -9.51037 -9.42814 -9.13373 -8.93279 -8.79442 -8.55438 -7.03350 -5.83161 -3.11627 0.95355 0.99827 2.99260 3.34191 3.38070 3.44768 3.45870 3.63428 4.09515 4.49479 4.53159 4.55970 4.74450 4.86723 4.95219 5.06703 5.11356 5.17525 5.38410 5.42627 5.50230 5.53465 5.59874 5.66610 5.73865 5.79301 5.81628 5.84254 5.89725 5.91658 5.97662 6.12033 6.13329 6.15546 6.20025 6.24546 6.29964 6.34198 6.44162 6.58043 6.65628 6.69861 6.71959 6.80950 6.98276 7.05976 7.34048 7.65673 7.98290 8.34247 8.61450 9.46579 10.01516 10.37897 11.38616 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.002891 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.865455 B = 9683.228817 C =11003.931276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.168 3.832 5 H 0.052 0.948 6 C 0.111 3.889 7 N -0.710 5.710 8 C 0.516 3.484 9 O -0.556 6.556 10 C -0.105 4.105 11 H 0.100 0.900 12 C -0.145 4.145 13 C -0.061 4.061 14 C -0.109 4.109 15 C -0.087 4.087 16 C -0.129 4.129 17 C -0.099 4.099 18 C -0.155 4.155 19 C 0.101 3.899 20 F -0.135 7.135 21 N -0.717 5.717 22 C -0.235 4.235 23 H 0.072 0.928 24 C -0.010 4.010 25 N -0.929 5.929 26 Si 0.901 3.099 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.410 0.590 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.134 0.866 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.133 0.867 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.764 -8.371 2.535 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.070 0.930 6 C -0.013 4.013 7 N -0.361 5.361 8 C 0.302 3.698 9 O -0.436 6.436 10 C -0.126 4.126 11 H 0.118 0.882 12 C -0.202 4.202 13 C -0.098 4.098 14 C -0.110 4.110 15 C -0.106 4.106 16 C -0.147 4.147 17 C -0.117 4.117 18 C -0.174 4.174 19 C 0.082 3.918 20 F -0.114 7.114 21 N -0.359 5.359 22 C -0.366 4.366 23 H 0.090 0.910 24 C -0.206 4.206 25 N -0.577 5.577 26 Si 0.732 3.268 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.247 0.753 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.152 0.848 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.151 0.849 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.108 -8.188 1.939 17.293 hybrid contribution -1.254 -0.225 0.758 1.482 sum 13.855 -8.413 2.698 16.432 Atomic orbital electron populations 1.21834 0.95029 1.00817 1.02067 1.21616 0.96771 0.96580 0.97955 1.21792 0.99681 0.96775 1.01625 1.20542 0.89423 0.95877 0.88436 0.92969 1.21751 0.95614 0.98450 0.85505 1.45990 1.06708 1.62110 1.21277 1.20434 0.82591 0.78556 0.88209 1.90651 1.55598 1.50145 1.47164 1.21255 0.95777 0.98591 0.96992 0.88172 1.21903 1.01588 0.94084 1.02659 1.20352 0.93560 1.03217 0.92692 1.20019 1.01463 0.91620 0.97922 1.21051 0.97305 0.99812 0.92384 1.21224 1.00300 0.95849 0.97295 1.20995 0.98986 0.92928 0.98751 1.21141 1.02616 1.01070 0.92598 1.17554 1.01051 0.86535 0.86633 1.91507 1.90256 1.67475 1.62136 1.42418 1.17988 1.47462 1.28069 1.19193 0.92860 1.18044 1.06520 0.90995 1.24700 0.98220 0.99271 0.98452 1.69656 1.36885 1.29110 1.22075 0.86287 0.84377 0.77151 0.78950 1.21835 1.21923 1.20789 0.94170 0.89368 0.95039 0.93301 0.93662 0.94336 0.91265 0.92124 0.91394 0.75340 0.91917 0.91809 0.91729 0.90011 0.89502 0.84839 0.85353 0.85236 0.84919 0.78055 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.26 37.16 0.31 -2.20 16 2 C -0.11 -1.83 2.80 -90.62 -0.25 -2.08 16 3 C -0.14 -2.40 8.69 37.16 0.32 -2.08 16 4 C 0.17 3.04 2.35 -67.93 -0.16 2.88 16 5 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 6 C 0.11 1.89 5.02 -4.04 -0.02 1.87 16 7 N -0.71 -11.73 5.28 -60.29 -0.32 -12.05 16 8 C 0.52 8.46 7.15 -10.99 -0.08 8.38 16 9 O -0.56 -10.66 15.92 5.56 0.09 -10.57 16 10 C -0.10 -1.40 2.72 -91.77 -0.25 -1.65 16 11 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 12 C -0.14 -1.79 7.73 37.16 0.29 -1.51 16 13 C -0.06 -0.76 4.04 -27.87 -0.11 -0.87 16 14 C -0.11 -1.22 4.86 -104.55 -0.51 -1.73 16 15 C -0.09 -0.85 9.68 -39.60 -0.38 -1.23 16 16 C -0.13 -1.07 10.04 -39.57 -0.40 -1.47 16 17 C -0.10 -0.79 10.04 -39.59 -0.40 -1.19 16 18 C -0.16 -1.43 10.03 -39.52 -0.40 -1.83 16 19 C 0.10 1.13 5.86 -39.42 -0.23 0.90 16 20 F -0.14 -1.63 14.37 2.25 0.03 -1.60 16 21 N -0.72 -15.74 3.67 -53.42 -0.20 -15.93 16 22 C -0.24 -5.80 7.57 -15.06 -0.11 -5.91 16 23 H 0.07 1.75 7.40 -52.49 -0.39 1.36 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -26.10 13.06 55.49 0.72 -25.38 16 26 Si 0.90 21.19 29.55 -169.99 -5.02 16.17 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.86 6.01 -51.93 -0.31 1.55 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.73 6.32 -51.93 -0.33 0.40 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.36 7.60 -51.93 -0.39 0.97 16 37 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 38 H 0.07 1.23 6.17 -51.93 -0.32 0.91 16 39 H 0.41 6.87 7.56 -40.82 -0.31 6.56 16 40 H 0.06 0.79 7.88 -51.93 -0.41 0.38 16 41 H 0.06 0.76 5.61 -51.93 -0.29 0.46 16 42 H 0.06 0.79 7.56 -51.93 -0.39 0.40 16 43 H 0.08 1.09 7.79 -51.93 -0.40 0.68 16 44 H 0.09 1.10 7.86 -51.93 -0.41 0.69 16 45 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 47 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 48 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 49 H 0.39 9.30 7.80 -40.82 -0.32 8.99 16 50 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -28.62 398.54 -9.23 -37.84 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -8.06 Total: 15.59 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.48 Total: -10.08 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.21 Total: -53.36 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.03 Total: -1.60 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.62 -9.23 -37.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715503264.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.143 kcal (2) G-P(sol) polarization free energy of solvation -28.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds