Wall clock time and date at job start Tue Mar 31 2020 19:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00086 * 2 1 3 5 5 H 1.09000 * 109.47521 * 60.00160 * 4 2 1 6 6 C 1.53003 * 109.47332 * 180.02562 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 H 1.09000 * 109.47726 * 299.99386 * 10 8 7 12 12 C 1.52998 * 109.47502 * 60.00087 * 10 8 7 13 13 C 1.53011 * 109.46807 * 179.97438 * 10 8 7 14 14 C 1.50705 * 109.46872 * 174.99984 * 13 10 8 15 15 C 1.38212 * 120.01333 * 264.72343 * 14 13 10 16 16 C 1.38224 * 120.02748 * 179.72290 * 15 14 13 17 17 C 1.38269 * 120.04784 * 0.55314 * 16 15 14 18 18 C 1.38174 * 120.02450 * 359.72437 * 17 16 15 19 19 C 1.38439 * 120.01337 * 85.00128 * 14 13 10 20 20 F 1.35106 * 120.02407 * 359.97438 * 19 14 13 21 21 N 1.46505 * 109.47130 * 300.00074 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47086 * 299.99896 * 1 2 3 32 32 H 1.08994 * 109.46999 * 59.99901 * 1 2 3 33 33 H 1.08998 * 109.47497 * 240.00304 * 2 1 3 34 34 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47225 * 300.00492 * 3 2 1 36 36 H 1.09003 * 109.47030 * 60.00070 * 3 2 1 37 37 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 38 38 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 39 39 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 40 40 H 1.09000 * 109.47518 * 59.99423 * 12 10 8 41 41 H 1.08996 * 109.47584 * 179.97438 * 12 10 8 42 42 H 1.08998 * 109.46815 * 299.99599 * 12 10 8 43 43 H 1.08999 * 109.47078 * 294.99588 * 13 10 8 44 44 H 1.08994 * 109.46854 * 54.99884 * 13 10 8 45 45 H 1.08006 * 119.98706 * 0.02562 * 15 14 13 46 46 H 1.07995 * 119.97973 * 180.29934 * 16 15 14 47 47 H 1.07997 * 119.98706 * 179.74057 * 17 16 15 48 48 H 1.08001 * 120.01494 * 180.02562 * 18 17 16 49 49 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 50 50 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 3.5700 -0.7207 1.2495 7 7 4.0584 -1.3045 2.5013 8 6 5.3834 -1.4077 2.7249 9 8 6.1716 -1.0176 1.8897 10 6 5.8857 -2.0077 4.0128 11 1 5.5218 -1.4185 4.8545 12 6 5.3767 -3.4450 4.1385 13 6 7.4158 -2.0072 4.0130 14 6 7.9180 -2.4928 5.3484 15 6 8.2518 -1.5830 6.3339 16 6 8.7070 -2.0282 7.5607 17 6 8.8399 -3.3835 7.7997 18 6 8.5123 -4.2947 6.8140 19 6 8.0507 -3.8501 5.5865 20 9 7.7296 -4.7402 4.6221 21 7 1.5517 -0.0306 2.4454 22 6 0.3102 -0.3211 2.9447 23 1 -0.3089 -1.0596 2.4570 24 6 -0.1502 0.3291 4.0815 25 7 0.6044 1.2286 4.6762 26 14 -1.8407 -0.0727 4.7672 27 1 -1.7260 -1.1804 5.7495 28 1 -2.4009 1.1278 5.4382 29 1 -2.7392 -0.4849 3.6590 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 3.9337 -1.3099 0.4076 38 1 3.9331 0.3032 1.1601 39 1 3.4280 -1.6162 3.1695 40 1 5.7406 -4.0344 3.2968 41 1 5.7403 -3.8792 5.0698 42 1 4.2867 -3.4458 4.1382 43 1 7.7794 -2.6679 3.2260 44 1 7.7788 -0.9952 3.8344 45 1 8.1522 -0.5239 6.1470 46 1 8.9630 -1.3167 8.3319 47 1 9.1997 -3.7301 8.7572 48 1 8.6158 -5.3534 7.0009 49 1 2.1078 0.6323 2.8837 50 1 0.2825 1.6833 5.4704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715503264.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:51 Heat of formation + Delta-G solvation = -83.709813 kcal Electronic energy + Delta-G solvation = -29541.512128 eV Core-core repulsion = 25481.915686 eV Total energy + Delta-G solvation = -4059.596442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.89412 -41.09571 -39.92879 -38.86088 -36.00785 -35.29160 -34.71757 -32.27641 -31.81635 -31.29532 -29.44314 -27.76309 -27.70432 -25.83987 -24.82575 -23.67016 -23.31277 -22.09365 -20.94356 -20.10051 -19.18666 -18.58054 -18.08437 -17.39601 -17.20245 -16.76674 -16.69521 -16.48501 -16.24342 -15.92775 -15.35682 -15.13797 -15.03281 -14.92783 -14.59006 -14.35554 -14.26106 -13.95645 -13.81100 -13.63421 -13.34502 -13.18741 -13.11192 -12.89165 -12.81092 -12.65639 -12.56773 -12.43844 -12.17897 -12.13100 -12.00175 -11.93592 -11.86720 -11.85294 -11.36578 -11.18298 -10.88659 -10.70306 -9.95706 -9.87592 -9.56147 -8.91484 -7.84298 -5.09960 0.21732 0.29149 1.50739 1.52964 1.58920 1.66081 2.28354 2.62054 2.69101 3.34676 3.48684 3.56761 3.76911 3.82544 3.90973 3.96054 3.99611 4.03624 4.19192 4.28274 4.34568 4.36500 4.40224 4.45011 4.46657 4.67782 4.71382 4.76929 4.77929 4.82206 4.95877 4.98301 4.99923 5.10530 5.13363 5.15831 5.19531 5.23529 5.27405 5.30942 5.33508 5.46203 5.52313 5.57308 5.60300 5.66228 5.83374 5.99656 6.35875 6.61641 7.26310 7.44621 8.16178 8.41965 9.38457 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.002891 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.865455 B = 9683.228817 C =11003.931276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.170 3.830 5 H 0.055 0.945 6 C 0.119 3.881 7 N -0.709 5.709 8 C 0.515 3.485 9 O -0.585 6.585 10 C -0.098 4.098 11 H 0.104 0.896 12 C -0.137 4.137 13 C -0.053 4.053 14 C -0.125 4.125 15 C -0.098 4.098 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.159 4.159 19 C 0.080 3.920 20 F -0.147 7.147 21 N -0.720 5.720 22 C -0.212 4.212 23 H 0.077 0.923 24 C -0.069 4.069 25 N -0.965 5.965 26 Si 0.954 3.046 27 H -0.291 1.291 28 H -0.306 1.306 29 H -0.273 1.273 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.410 0.590 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.140 0.860 46 H 0.154 0.846 47 H 0.161 0.839 48 H 0.150 0.850 49 H 0.373 0.627 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.239 -9.574 2.733 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.192 4.192 4 C 0.061 3.939 5 H 0.073 0.927 6 C -0.006 4.006 7 N -0.360 5.360 8 C 0.302 3.698 9 O -0.466 6.466 10 C -0.119 4.119 11 H 0.122 0.878 12 C -0.194 4.194 13 C -0.090 4.090 14 C -0.125 4.125 15 C -0.116 4.116 16 C -0.145 4.145 17 C -0.111 4.111 18 C -0.177 4.177 19 C 0.061 3.939 20 F -0.126 7.126 21 N -0.360 5.360 22 C -0.343 4.343 23 H 0.095 0.905 24 C -0.261 4.261 25 N -0.617 5.617 26 Si 0.786 3.214 27 H -0.219 1.219 28 H -0.233 1.233 29 H -0.199 1.199 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.246 0.754 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.158 0.842 46 H 0.172 0.828 47 H 0.178 0.822 48 H 0.167 0.833 49 H 0.206 0.794 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.573 -9.430 2.097 18.326 hybrid contribution -1.338 0.127 0.631 1.485 sum 14.235 -9.304 2.728 17.223 Atomic orbital electron populations 1.21747 0.95479 1.00852 1.01223 1.21587 0.96290 0.96628 0.98166 1.21709 1.00075 0.96585 1.00828 1.20669 0.90123 0.95560 0.87557 0.92698 1.21647 0.94586 0.98147 0.86213 1.46009 1.06891 1.61919 1.21147 1.20932 0.82144 0.77884 0.88810 1.90631 1.56169 1.51446 1.48386 1.21238 0.96470 0.98954 0.95238 0.87772 1.21833 1.01467 0.93246 1.02856 1.20207 0.92793 1.02519 0.93527 1.19939 1.02925 0.92129 0.97553 1.21247 0.97473 1.00044 0.92814 1.21573 0.99076 0.96723 0.97116 1.21401 0.97583 0.92575 0.99553 1.21428 1.01961 1.02377 0.91979 1.17813 1.02372 0.86394 0.87327 1.91471 1.90556 1.67778 1.62753 1.42478 1.17077 1.47316 1.29153 1.19445 0.93323 1.16292 1.05285 0.90493 1.25272 1.00965 1.00232 0.99645 1.69793 1.38289 1.30965 1.22638 0.85418 0.81544 0.76155 0.78317 1.21904 1.23305 1.19859 0.93633 0.92967 0.93100 0.90438 0.92977 0.92547 0.94565 0.90829 0.92493 0.75395 0.92321 0.91092 0.91681 0.91386 0.90198 0.84176 0.82844 0.82176 0.83253 0.79438 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 8.26 71.98 0.59 -4.01 16 2 C -0.11 -3.37 2.80 -10.79 -0.03 -3.40 16 3 C -0.13 -4.40 8.69 71.98 0.63 -3.78 16 4 C 0.17 5.97 2.35 44.99 0.11 6.07 16 5 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 6 C 0.12 3.92 5.02 86.38 0.43 4.36 16 7 N -0.71 -23.30 5.28 -463.05 -2.45 -25.75 16 8 C 0.51 16.96 7.15 87.66 0.63 17.59 16 9 O -0.59 -22.63 15.92 -3.02 -0.05 -22.67 16 10 C -0.10 -2.63 2.72 -11.54 -0.03 -2.66 16 11 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 12 C -0.14 -3.36 7.73 71.98 0.56 -2.80 16 13 C -0.05 -1.34 4.04 29.85 0.12 -1.22 16 14 C -0.12 -2.75 4.86 -19.82 -0.10 -2.84 16 15 C -0.10 -1.80 9.68 22.26 0.22 -1.58 16 16 C -0.13 -1.80 10.04 22.27 0.22 -1.58 16 17 C -0.09 -1.23 10.04 22.26 0.22 -1.00 16 18 C -0.16 -2.63 10.03 22.31 0.22 -2.41 16 19 C 0.08 1.73 5.86 22.37 0.13 1.86 16 20 F -0.15 -3.55 14.37 44.97 0.65 -2.91 16 21 N -0.72 -31.57 3.67 -322.93 -1.19 -32.76 16 22 C -0.21 -10.37 7.57 84.04 0.64 -9.74 16 23 H 0.08 3.67 7.40 -2.91 -0.02 3.65 16 24 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 25 N -0.97 -55.41 13.06 21.65 0.28 -55.13 16 26 Si 0.95 43.92 29.55 68.60 2.03 45.95 16 27 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 28 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 29 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 2.16 6.01 -2.39 -0.01 2.14 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.05 1.61 6.32 -2.39 -0.02 1.60 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.41 7.60 -2.39 -0.02 1.40 16 37 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.06 2.03 6.17 -2.39 -0.01 2.02 16 39 H 0.41 13.66 7.56 -92.71 -0.70 12.96 16 40 H 0.06 1.48 7.88 -2.39 -0.02 1.46 16 41 H 0.07 1.65 5.61 -2.39 -0.01 1.64 16 42 H 0.06 1.57 7.56 -2.39 -0.02 1.55 16 43 H 0.07 1.89 7.79 -2.39 -0.02 1.87 16 44 H 0.08 2.09 7.86 -2.39 -0.02 2.07 16 45 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 46 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 47 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 48 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 49 H 0.37 18.33 7.80 -92.71 -0.72 17.61 16 50 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -61.94 398.54 3.83 -58.12 By element: Atomic # 1 Polarization: 45.95 SS G_CDS: -0.47 Total: 45.48 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 5.03 Total: -10.33 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -3.35 Total: -113.64 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.65 Total: -2.91 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -61.94 3.83 -58.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715503264.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.593 kcal (2) G-P(sol) polarization free energy of solvation -61.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds