Wall clock time and date at job start Tue Mar 31 2020 19:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99861 * 2 1 4 4 C 1.53004 * 109.47346 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47418 * 180.02562 * 4 3 2 6 6 C 1.34258 * 125.75309 * 124.71858 * 5 4 3 7 7 C 1.38044 * 107.41872 * 179.90530 * 6 5 4 8 8 C 1.47425 * 126.41891 * 180.10535 * 7 6 5 9 9 O 1.21605 * 119.99588 * 7.35783 * 8 7 6 10 10 N 1.34772 * 120.00433 * 187.36225 * 8 7 6 11 11 C 1.47486 * 127.03029 * 5.64040 * 10 8 7 12 12 C 1.54008 * 107.08500 * 154.51902 * 11 10 8 13 13 H 1.08993 * 110.32354 * 242.30981 * 12 11 10 14 14 C 1.53000 * 110.32853 * 120.19428 * 12 11 10 15 15 C 1.54614 * 105.04378 * 1.30249 * 12 11 10 16 16 H 1.09010 * 110.73968 * 263.51710 * 15 12 11 17 17 C 1.52998 * 110.74067 * 140.37051 * 15 12 11 18 18 N 1.46500 * 109.47304 * 174.99975 * 17 15 12 19 19 C 1.36930 * 120.00401 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99469 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00375 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00150 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00046 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47206 * 60.00135 * 23 21 19 25 25 H 1.48501 * 109.47372 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47401 * 299.99700 * 23 21 19 27 27 C 1.48114 * 127.03820 * 185.32340 * 10 8 7 28 28 C 1.41296 * 107.16645 * 0.35717 * 7 6 5 29 29 N 1.30445 * 108.02197 * 359.77815 * 28 7 6 30 30 H 1.09003 * 109.47231 * 59.99875 * 1 2 3 31 31 H 1.09006 * 109.47116 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47412 * 300.00069 * 1 2 3 33 33 H 1.09003 * 109.46953 * 60.00529 * 3 2 1 34 34 H 1.08998 * 109.47503 * 300.00243 * 3 2 1 35 35 H 1.08998 * 109.47169 * 300.00633 * 4 3 2 36 36 H 1.09001 * 109.46817 * 59.99999 * 4 3 2 37 37 H 1.08000 * 126.28983 * 0.02562 * 6 5 4 38 38 H 1.09004 * 109.90985 * 273.87623 * 11 10 8 39 39 H 1.08999 * 109.91594 * 34.95962 * 11 10 8 40 40 H 1.08999 * 109.46830 * 61.45375 * 14 12 11 41 41 H 1.09003 * 109.46930 * 181.45364 * 14 12 11 42 42 H 1.08998 * 109.46870 * 301.45430 * 14 12 11 43 43 H 1.08995 * 109.46899 * 294.99835 * 17 15 12 44 44 H 1.08993 * 109.47124 * 54.99766 * 17 15 12 45 45 H 0.96999 * 119.99855 * 0.02562 * 18 17 15 46 46 H 0.96998 * 119.99794 * 180.02562 * 22 21 19 47 47 H 1.09005 * 110.65774 * 337.76827 * 27 10 8 48 48 H 1.08994 * 110.66585 * 100.88434 * 27 10 8 49 49 H 1.08003 * 125.98470 * 179.80944 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0168 2.9870 0.8974 7 6 5.3256 4.2841 0.5397 8 6 6.2599 5.1857 1.2379 9 8 6.9443 4.7639 2.1503 10 7 6.3555 6.4773 0.8652 11 6 5.5257 7.1774 -0.1330 12 6 5.5427 8.6732 0.2333 13 1 4.5364 9.0153 0.4747 14 6 6.1207 9.4963 -0.9196 15 6 6.4582 8.7717 1.4754 16 1 5.8673 8.7717 2.3915 17 6 7.3392 10.0204 1.4014 18 7 8.1068 10.1508 2.6424 19 6 8.9706 11.2006 2.8062 20 1 9.0862 11.9323 2.0203 21 6 9.6982 11.3238 3.9818 22 7 9.5576 10.4317 4.9394 23 14 10.8760 12.7564 4.2055 24 1 10.1247 14.0339 4.1132 25 1 11.5255 12.6599 5.5375 26 1 11.9137 12.7145 3.1442 27 6 7.3109 7.4858 1.3789 28 6 4.5741 4.5877 -0.6177 29 7 3.8688 3.5353 -0.9285 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6886 1.8463 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6436 -0.8891 37 1 5.4159 2.4445 1.7416 38 1 5.9440 7.0345 -1.1294 39 1 4.5052 6.7959 -0.1009 40 1 5.4931 9.3755 -1.8026 41 1 6.1502 10.5483 -0.6359 42 1 7.1306 9.1514 -1.1416 43 1 8.0242 9.9323 0.5582 44 1 6.7109 10.9010 1.2686 45 1 8.0037 9.4930 3.3478 46 1 10.0659 10.5181 5.7611 47 1 7.6830 7.1973 2.3620 48 1 8.1357 7.6253 0.6801 49 1 4.5826 5.5264 -1.1517 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716994267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:52 Heat of formation + Delta-G solvation = 22.454745 kcal Electronic energy + Delta-G solvation = -28655.823136 eV Core-core repulsion = 24620.750297 eV Total energy + Delta-G solvation = -4035.072840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.71376 -39.80542 -38.52232 -37.72410 -34.73629 -34.26711 -32.79381 -31.15321 -30.74600 -29.99691 -28.70896 -26.89659 -26.57407 -25.37127 -23.93805 -23.62480 -22.27880 -21.63276 -21.00516 -19.51912 -18.96258 -17.83805 -17.10565 -16.86294 -16.70786 -16.15159 -15.94778 -15.71574 -15.43686 -14.97034 -14.78498 -14.64198 -14.36757 -13.90153 -13.72462 -13.41244 -13.31648 -13.10555 -12.84438 -12.61355 -12.39542 -12.27537 -12.19252 -12.01225 -11.91894 -11.76301 -11.56622 -11.23326 -10.94020 -10.79737 -10.47027 -10.34830 -10.32107 -10.21638 -9.97092 -9.90426 -9.75089 -9.62503 -8.99294 -8.82359 -8.48092 -6.87312 -5.71010 -3.00219 1.27787 1.81610 1.96474 3.10172 3.19875 3.46223 3.47512 3.51639 3.53076 4.04869 4.30761 4.43665 4.49129 4.59254 4.64434 4.65640 4.74666 4.77087 4.79425 4.90774 4.93347 5.04810 5.08125 5.12949 5.24233 5.28688 5.41091 5.45627 5.56902 5.59902 5.64673 5.84254 5.89391 6.00108 6.09927 6.13764 6.21743 6.28007 6.35581 6.38404 6.47394 6.50737 6.57137 6.76689 6.90163 7.21592 7.72439 7.73440 8.35223 8.47334 9.58275 10.16455 10.50503 11.51556 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.001945 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.481902 B =14394.526670 C =15051.163179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.363 5.363 6 C 0.131 3.869 7 C -0.282 4.282 8 C 0.610 3.390 9 O -0.546 6.546 10 N -0.617 5.617 11 C 0.098 3.902 12 C -0.099 4.099 13 H 0.082 0.918 14 C -0.146 4.146 15 C -0.103 4.103 16 H 0.082 0.918 17 C 0.165 3.835 18 N -0.734 5.734 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.118 3.882 28 C 0.074 3.926 29 N -0.299 5.299 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.190 0.810 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.023 0.977 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.578 -18.564 -14.556 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.143 5.143 6 C -0.020 4.020 7 C -0.297 4.297 8 C 0.399 3.601 9 O -0.425 6.425 10 N -0.350 5.350 11 C -0.026 4.026 12 C -0.118 4.118 13 H 0.100 0.900 14 C -0.203 4.203 15 C -0.123 4.123 16 H 0.100 0.900 17 C 0.037 3.963 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.004 4.004 28 C -0.113 4.113 29 N -0.119 5.119 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.207 0.793 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.041 0.959 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -18.932 -19.583 -14.891 31.043 hybrid contribution 0.942 1.184 0.960 1.792 sum -17.990 -18.399 -13.932 29.262 Atomic orbital electron populations 1.22791 0.79834 1.03178 1.00452 1.87777 1.20672 1.26844 1.95618 1.22652 0.92436 0.85426 1.02172 1.21493 0.92753 0.78660 1.05787 1.48315 1.33232 1.11998 1.20793 1.22997 0.90735 0.94197 0.94056 1.20266 1.10154 0.96187 1.03061 1.16774 0.81471 0.79855 0.81983 1.90807 1.46266 1.75287 1.30111 1.48548 1.35988 1.08849 1.41573 1.22514 0.95295 0.92550 0.92217 1.22048 1.00205 0.93386 0.96206 0.89954 1.21910 1.00946 1.00818 0.96614 1.22451 0.96712 0.95516 0.97638 0.89994 1.20706 0.92242 0.92747 0.90580 1.42402 1.49105 1.30789 1.15503 1.19156 1.15697 1.02265 1.00092 0.91261 1.24746 1.00662 0.98786 0.96740 1.69656 1.45045 1.36254 1.07043 0.86278 0.80961 0.82118 0.76865 1.21337 1.21739 1.21296 1.22478 0.91268 0.85627 1.00983 1.24662 0.93361 0.97926 0.95342 1.77158 1.24556 0.96749 1.13444 0.93669 0.89111 0.93724 0.92511 0.91431 0.87238 0.88281 0.79279 0.91244 0.90615 0.93005 0.91358 0.92082 0.95719 0.95906 0.78245 0.93458 0.89230 0.90759 0.78484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.79 10.70 -35.23 -0.38 -3.16 16 3 C 0.05 0.34 6.11 37.16 0.23 0.56 16 4 C 0.13 0.84 6.86 -4.04 -0.03 0.82 16 5 N -0.36 -3.33 3.65 -60.81 -0.22 -3.55 16 6 C 0.13 1.33 11.26 -16.56 -0.19 1.15 16 7 C -0.28 -3.46 6.06 -105.07 -0.64 -4.10 16 8 C 0.61 9.50 7.87 -12.52 -0.10 9.40 16 9 O -0.55 -10.61 17.10 5.27 0.09 -10.52 16 10 N -0.62 -8.84 3.29 -171.24 -0.56 -9.40 16 11 C 0.10 1.03 4.88 -2.98 -0.01 1.01 16 12 C -0.10 -1.14 3.53 -89.25 -0.32 -1.45 16 13 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 14 C -0.15 -1.54 7.78 37.16 0.29 -1.25 16 15 C -0.10 -1.63 2.98 -88.93 -0.27 -1.89 16 16 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 17 C 0.17 3.16 4.44 -4.04 -0.02 3.14 16 18 N -0.73 -18.46 5.52 -59.92 -0.33 -18.79 16 19 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 23 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.12 1.96 6.47 -2.31 -0.01 1.94 16 28 C 0.07 0.78 10.34 -16.98 -0.18 0.60 16 29 N -0.30 -3.19 12.33 30.86 0.38 -2.81 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.47 8.06 -51.93 -0.42 0.05 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.07 0.62 7.37 -51.93 -0.38 0.24 16 39 H 0.08 0.67 5.85 -51.93 -0.30 0.36 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.78 6.76 -51.93 -0.35 0.43 16 42 H 0.06 0.69 7.51 -51.93 -0.39 0.30 16 43 H 0.03 0.47 6.81 -51.93 -0.35 0.12 16 44 H 0.02 0.44 7.37 -51.93 -0.38 0.06 16 45 H 0.38 10.32 7.67 -40.82 -0.31 10.01 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.09 1.76 7.81 -51.93 -0.41 1.35 16 48 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 49 H 0.20 1.58 4.98 -52.48 -0.26 1.32 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -35.50 397.23 -7.45 -42.96 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.75 Total: 5.78 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.37 Total: 3.84 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.01 Total: -62.44 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.29 Total: -13.69 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.50 -7.45 -42.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716994267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.413 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds