Wall clock time and date at job start Tue Mar 31 2020 19:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99861 * 2 1 4 4 C 1.53004 * 109.47346 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47418 * 180.02562 * 4 3 2 6 6 C 1.34258 * 125.75309 * 124.71858 * 5 4 3 7 7 C 1.38044 * 107.41872 * 179.90530 * 6 5 4 8 8 C 1.47425 * 126.41891 * 180.10535 * 7 6 5 9 9 O 1.21605 * 119.99588 * 7.35783 * 8 7 6 10 10 N 1.34772 * 120.00433 * 187.36225 * 8 7 6 11 11 C 1.47486 * 127.03029 * 5.64040 * 10 8 7 12 12 C 1.54008 * 107.08500 * 154.51902 * 11 10 8 13 13 H 1.08993 * 110.32354 * 242.30981 * 12 11 10 14 14 C 1.53000 * 110.32853 * 120.19428 * 12 11 10 15 15 C 1.54614 * 105.04378 * 1.30249 * 12 11 10 16 16 H 1.09010 * 110.73968 * 263.51710 * 15 12 11 17 17 C 1.52998 * 110.74067 * 140.37051 * 15 12 11 18 18 N 1.46500 * 109.47304 * 174.99975 * 17 15 12 19 19 C 1.36930 * 120.00401 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99469 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00375 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00150 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00046 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47206 * 60.00135 * 23 21 19 25 25 H 1.48501 * 109.47372 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47401 * 299.99700 * 23 21 19 27 27 C 1.48114 * 127.03820 * 185.32340 * 10 8 7 28 28 C 1.41296 * 107.16645 * 0.35717 * 7 6 5 29 29 N 1.30445 * 108.02197 * 359.77815 * 28 7 6 30 30 H 1.09003 * 109.47231 * 59.99875 * 1 2 3 31 31 H 1.09006 * 109.47116 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47412 * 300.00069 * 1 2 3 33 33 H 1.09003 * 109.46953 * 60.00529 * 3 2 1 34 34 H 1.08998 * 109.47503 * 300.00243 * 3 2 1 35 35 H 1.08998 * 109.47169 * 300.00633 * 4 3 2 36 36 H 1.09001 * 109.46817 * 59.99999 * 4 3 2 37 37 H 1.08000 * 126.28983 * 0.02562 * 6 5 4 38 38 H 1.09004 * 109.90985 * 273.87623 * 11 10 8 39 39 H 1.08999 * 109.91594 * 34.95962 * 11 10 8 40 40 H 1.08999 * 109.46830 * 61.45375 * 14 12 11 41 41 H 1.09003 * 109.46930 * 181.45364 * 14 12 11 42 42 H 1.08998 * 109.46870 * 301.45430 * 14 12 11 43 43 H 1.08995 * 109.46899 * 294.99835 * 17 15 12 44 44 H 1.08993 * 109.47124 * 54.99766 * 17 15 12 45 45 H 0.96999 * 119.99855 * 0.02562 * 18 17 15 46 46 H 0.96998 * 119.99794 * 180.02562 * 22 21 19 47 47 H 1.09005 * 110.65774 * 337.76827 * 27 10 8 48 48 H 1.08994 * 110.66585 * 100.88434 * 27 10 8 49 49 H 1.08003 * 125.98470 * 179.80944 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0168 2.9870 0.8974 7 6 5.3256 4.2841 0.5397 8 6 6.2599 5.1857 1.2379 9 8 6.9443 4.7639 2.1503 10 7 6.3555 6.4773 0.8652 11 6 5.5257 7.1774 -0.1330 12 6 5.5427 8.6732 0.2333 13 1 4.5364 9.0153 0.4747 14 6 6.1207 9.4963 -0.9196 15 6 6.4582 8.7717 1.4754 16 1 5.8673 8.7717 2.3915 17 6 7.3392 10.0204 1.4014 18 7 8.1068 10.1508 2.6424 19 6 8.9706 11.2006 2.8062 20 1 9.0862 11.9323 2.0203 21 6 9.6982 11.3238 3.9818 22 7 9.5576 10.4317 4.9394 23 14 10.8760 12.7564 4.2055 24 1 10.1247 14.0339 4.1132 25 1 11.5255 12.6599 5.5375 26 1 11.9137 12.7145 3.1442 27 6 7.3109 7.4858 1.3789 28 6 4.5741 4.5877 -0.6177 29 7 3.8688 3.5353 -0.9285 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6886 1.8463 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6436 -0.8891 37 1 5.4159 2.4445 1.7416 38 1 5.9440 7.0345 -1.1294 39 1 4.5052 6.7959 -0.1009 40 1 5.4931 9.3755 -1.8026 41 1 6.1502 10.5483 -0.6359 42 1 7.1306 9.1514 -1.1416 43 1 8.0242 9.9323 0.5582 44 1 6.7109 10.9010 1.2686 45 1 8.0037 9.4930 3.3478 46 1 10.0659 10.5181 5.7611 47 1 7.6830 7.1973 2.3620 48 1 8.1357 7.6253 0.6801 49 1 4.5826 5.5264 -1.1517 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716994267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:51 Heat of formation + Delta-G solvation = -2.995203 kcal Electronic energy + Delta-G solvation = -28656.926729 eV Core-core repulsion = 24620.750297 eV Total energy + Delta-G solvation = -4036.176432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.53170 -40.93592 -39.09095 -38.89835 -36.42712 -35.07593 -34.17095 -32.80633 -31.57991 -31.00949 -29.89127 -27.71852 -27.31767 -26.78893 -25.16861 -24.51503 -23.76462 -22.64649 -21.78387 -20.53708 -20.25047 -19.10693 -18.43036 -17.73487 -17.39455 -17.05136 -16.96039 -16.62184 -16.47742 -16.28599 -15.90321 -15.57614 -15.42203 -15.19298 -14.98666 -14.60479 -14.45609 -14.13600 -13.99493 -13.77394 -13.41476 -13.33194 -13.07938 -12.99195 -12.83251 -12.73525 -12.69673 -12.63308 -12.35979 -12.19540 -12.02360 -11.81900 -11.56505 -11.46631 -11.30456 -10.95549 -10.85935 -10.78614 -10.66497 -9.94229 -9.57927 -8.95850 -7.91579 -5.20741 0.43237 1.09442 1.15036 1.48296 1.51979 1.57980 2.00142 2.37698 2.58537 2.71971 3.35609 3.42140 3.56523 3.64211 3.76137 3.84056 3.88316 3.90763 3.97334 4.18162 4.18285 4.26558 4.29406 4.41989 4.44847 4.47967 4.51462 4.59269 4.62062 4.63873 4.66949 4.71873 4.82842 4.86958 4.89782 4.94974 5.05203 5.21028 5.27588 5.30764 5.38352 5.44050 5.53287 5.60692 5.71545 6.01468 6.29930 6.43182 6.61187 7.17553 7.35620 8.13279 8.34540 9.32005 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.001945 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.481902 B =14394.526670 C =15051.163179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.129 3.871 5 N -0.355 5.355 6 C 0.139 3.861 7 C -0.307 4.307 8 C 0.604 3.396 9 O -0.600 6.600 10 N -0.616 5.616 11 C 0.096 3.904 12 C -0.088 4.088 13 H 0.102 0.898 14 C -0.144 4.144 15 C -0.097 4.097 16 H 0.063 0.937 17 C 0.167 3.833 18 N -0.749 5.749 19 C -0.243 4.243 20 H 0.080 0.920 21 C -0.080 4.080 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.276 1.276 25 H -0.299 1.299 26 H -0.277 1.277 27 C 0.122 3.878 28 C 0.084 3.916 29 N -0.312 5.312 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.206 0.794 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.320 -18.625 -17.158 32.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.009 3.991 5 N -0.134 5.134 6 C -0.013 4.013 7 C -0.322 4.322 8 C 0.396 3.604 9 O -0.482 6.482 10 N -0.348 5.348 11 C -0.025 4.025 12 C -0.107 4.107 13 H 0.120 0.880 14 C -0.201 4.201 15 C -0.117 4.117 16 H 0.082 0.918 17 C 0.040 3.960 18 N -0.392 5.392 19 C -0.374 4.374 20 H 0.098 0.902 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.203 1.203 27 C -0.001 4.001 28 C -0.104 4.104 29 N -0.132 5.132 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.222 0.778 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.091 0.909 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -20.737 -19.628 -17.588 33.535 hybrid contribution 1.397 1.121 1.704 2.472 sum -19.340 -18.507 -15.884 31.126 Atomic orbital electron populations 1.22968 0.78687 1.04275 1.00954 1.87752 1.21996 1.26985 1.95682 1.22550 0.92515 0.85307 1.01713 1.21760 0.92592 0.77395 1.07338 1.48506 1.32516 1.12540 1.19884 1.23270 0.90127 0.93756 0.94168 1.20063 1.11094 0.96621 1.04416 1.17303 0.81343 0.80305 0.81465 1.90769 1.48560 1.76300 1.32603 1.48582 1.35795 1.08412 1.41992 1.22802 0.96264 0.91272 0.92204 1.22059 0.99973 0.94500 0.94181 0.87979 1.21906 1.01137 0.99752 0.97317 1.22281 0.96608 0.93353 0.99410 0.91837 1.20872 0.92275 0.94624 0.88185 1.42682 1.49519 1.29858 1.17120 1.19635 1.15195 1.02596 1.00016 0.90201 1.25616 1.03065 1.01704 0.96804 1.69842 1.46533 1.38496 1.07491 0.85187 0.78865 0.79189 0.76373 1.20154 1.22527 1.20291 1.22215 0.92123 0.86958 0.98784 1.24940 0.92283 0.98696 0.94450 1.77147 1.24889 0.97105 1.14055 0.93156 0.87812 0.93241 0.92708 0.92142 0.85068 0.87446 0.77755 0.88559 0.88060 0.89626 0.92363 0.92963 0.94914 0.95074 0.79885 0.94184 0.93596 0.90942 0.76251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.12 10.70 -148.98 -1.59 -6.72 16 3 C 0.06 0.65 6.11 71.98 0.44 1.10 16 4 C 0.13 1.35 6.86 86.38 0.59 1.95 16 5 N -0.36 -5.80 3.65 -346.30 -1.26 -7.07 16 6 C 0.14 2.66 11.26 84.28 0.95 3.61 16 7 C -0.31 -7.19 6.06 -20.15 -0.12 -7.31 16 8 C 0.60 19.07 7.87 86.66 0.68 19.75 16 9 O -0.60 -24.53 17.10 -4.05 -0.07 -24.60 16 10 N -0.62 -17.50 3.29 -813.94 -2.68 -20.18 16 11 C 0.10 1.75 4.88 86.53 0.42 2.17 16 12 C -0.09 -1.79 3.53 -9.90 -0.03 -1.82 16 13 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 14 C -0.14 -2.57 7.78 71.98 0.56 -2.01 16 15 C -0.10 -3.05 2.98 -9.70 -0.03 -3.08 16 16 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 17 C 0.17 6.38 4.44 86.38 0.38 6.76 16 18 N -0.75 -38.68 5.52 -343.47 -1.90 -40.58 16 19 C -0.24 -13.70 9.99 84.03 0.84 -12.86 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 22 N -0.97 -61.72 13.06 21.65 0.28 -61.44 16 23 Si 0.98 46.97 29.55 68.60 2.03 48.99 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 C 0.12 4.21 6.47 86.61 0.56 4.77 16 28 C 0.08 1.53 10.34 85.65 0.89 2.41 16 29 N -0.31 -5.91 12.33 -56.27 -0.69 -6.61 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.13 0.81 8.06 -2.39 -0.02 0.79 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.21 3.13 8.06 -2.91 -0.02 3.10 16 38 H 0.10 1.31 7.37 -2.38 -0.02 1.30 16 39 H 0.10 1.39 5.85 -2.39 -0.01 1.37 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.18 6.76 -2.39 -0.02 1.16 16 42 H 0.05 1.04 7.51 -2.39 -0.02 1.02 16 43 H 0.03 1.23 6.81 -2.39 -0.02 1.21 16 44 H 0.03 1.17 7.37 -2.39 -0.02 1.15 16 45 H 0.37 20.90 7.67 -92.71 -0.71 20.19 16 46 H 0.25 15.42 8.31 -92.71 -0.77 14.64 16 47 H 0.05 1.96 7.81 -2.38 -0.02 1.95 16 48 H 0.07 2.48 7.94 -2.39 -0.02 2.46 16 49 H 0.22 2.68 4.98 -2.91 -0.01 2.66 16 Total: -1.00 -80.01 397.23 2.20 -77.81 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.25 Total: 27.74 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 7.84 Total: 12.65 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -6.25 Total: -135.88 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.66 Total: -31.31 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -80.01 2.20 -77.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716994267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.811 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds