Wall clock time and date at job start Tue Mar 31 2020 20:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46674 * 2 1 4 4 C 1.52997 * 109.47225 * 120.00380 * 2 1 3 5 5 C 1.50701 * 109.46904 * 295.00137 * 4 2 1 6 6 C 1.39867 * 126.04260 * 90.02627 * 5 4 2 7 7 N 1.30837 * 108.20821 * 179.97438 * 6 5 4 8 8 N 1.40084 * 108.20125 * 0.02562 * 7 6 5 9 9 C 1.46508 * 126.03686 * 179.97438 * 8 7 6 10 10 C 1.34951 * 107.92894 * 359.75454 * 8 7 6 11 11 C 1.50699 * 109.46834 * 240.00491 * 2 1 3 12 12 O 1.21276 * 119.99837 * 239.99357 * 11 2 1 13 13 N 1.34778 * 120.00186 * 60.00193 * 11 2 1 14 14 C 1.46496 * 119.99740 * 179.97438 * 13 11 2 15 15 C 1.53009 * 109.46939 * 174.66637 * 14 13 11 16 16 H 1.08995 * 109.67287 * 56.80863 * 15 14 13 17 17 C 1.53298 * 109.67994 * 177.35916 * 15 14 13 18 18 O 1.42955 * 109.21957 * 172.02630 * 17 15 14 19 19 C 1.42964 * 114.17040 * 297.42252 * 18 17 15 20 20 C 1.53298 * 109.22305 * 62.58030 * 19 18 17 21 21 N 1.47145 * 109.67973 * 296.29015 * 15 14 13 22 22 C 1.36931 * 120.98703 * 9.71765 * 21 15 14 23 23 H 1.08002 * 120.00245 * 40.16021 * 22 21 15 24 24 C 1.38821 * 120.00037 * 220.15830 * 22 21 15 25 25 N 1.31613 * 120.00105 * 10.45952 * 24 22 21 26 26 Si 1.86804 * 120.00069 * 190.45494 * 24 22 21 27 27 H 1.48503 * 109.46883 * 59.99813 * 26 24 22 28 28 H 1.48488 * 109.47107 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46875 * 300.00563 * 26 24 22 30 30 H 1.09001 * 109.47352 * 299.99799 * 1 2 3 31 31 H 1.09002 * 109.47435 * 59.99931 * 1 2 3 32 32 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47483 * 54.99715 * 4 2 1 34 34 H 1.08995 * 109.47294 * 175.00342 * 4 2 1 35 35 H 1.08005 * 125.89866 * 359.95344 * 6 5 4 36 36 H 1.08995 * 109.46800 * 89.97369 * 9 8 7 37 37 H 1.09000 * 109.46932 * 209.97395 * 9 8 7 38 38 H 1.08999 * 109.46715 * 329.97277 * 9 8 7 39 39 H 1.07997 * 126.13226 * 180.24259 * 10 8 7 40 40 H 0.96994 * 120.00076 * 359.97438 * 13 11 2 41 41 H 1.08996 * 109.47834 * 294.67060 * 14 13 11 42 42 H 1.09004 * 109.47056 * 54.67369 * 14 13 11 43 43 H 1.08993 * 109.51437 * 291.95062 * 17 15 14 44 44 H 1.09002 * 109.51147 * 52.10503 * 17 15 14 45 45 H 1.09002 * 109.50982 * 302.65389 * 19 18 17 46 46 H 1.09000 * 109.55316 * 182.53209 * 19 18 17 47 47 H 1.09002 * 109.68076 * 187.97779 * 20 19 18 48 48 H 1.08996 * 109.71410 * 67.44155 * 20 19 18 49 49 H 0.97004 * 120.00584 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0569 2.4765 6 6 0.4575 -0.1032 3.2040 7 7 0.4705 0.7469 4.1984 8 7 1.6647 1.4765 4.1348 9 6 2.0796 2.5332 5.0609 10 6 2.3677 1.0307 3.0726 11 6 2.0323 -0.7103 -1.2305 12 8 2.7296 -1.6963 -1.1193 13 7 1.7067 -0.2497 -2.4546 14 6 2.1955 -0.9400 -3.6508 15 6 1.5789 -0.3003 -4.8965 16 1 1.8125 0.7641 -4.9162 17 6 2.1376 -0.9758 -6.1540 18 8 1.4232 -0.5036 -7.2987 19 6 0.0293 -0.8214 -7.2909 20 6 -0.6374 -0.1380 -6.0915 21 7 0.1194 -0.4871 -4.8787 22 6 -0.5157 -0.9720 -3.7667 23 1 -0.2079 -0.6466 -2.7839 24 6 -1.5554 -1.8819 -3.9025 25 7 -1.7971 -2.4352 -5.0720 26 14 -2.6112 -2.3210 -2.4254 27 1 -3.2719 -1.0959 -1.9075 28 1 -3.6444 -3.3073 -2.8312 29 1 -1.7562 -2.9090 -1.3631 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7199 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 -0.3314 -0.8069 2.9828 36 1 2.6420 2.0939 5.8847 37 1 2.7077 3.2517 4.5344 38 1 1.1975 3.0399 5.4525 39 1 3.3356 1.3885 2.7540 40 1 1.1488 0.5387 -2.5436 41 1 3.2812 -0.8577 -3.6997 42 1 1.9125 -1.9916 -3.6045 43 1 3.1949 -0.7324 -6.2588 44 1 2.0185 -2.0560 -6.0705 45 1 -0.0975 -1.9011 -7.2115 46 1 -0.4307 -0.4676 -8.2135 47 1 -1.6658 -0.4862 -5.9955 48 1 -0.6275 0.9429 -6.2319 49 1 -2.5238 -3.0707 -5.1670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717140071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:32 Heat of formation + Delta-G solvation = 22.197834 kcal Electronic energy + Delta-G solvation = -30263.930022 eV Core-core repulsion = 26228.846041 eV Total energy + Delta-G solvation = -4035.083980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.31845 -39.48475 -38.23802 -35.39526 -34.87026 -33.54566 -33.00798 -31.51996 -30.52847 -30.09092 -27.63255 -27.11775 -25.87980 -25.38401 -23.31767 -22.82840 -21.55773 -21.13414 -20.23059 -19.66406 -19.15899 -17.32258 -16.87933 -16.06210 -15.80375 -15.52457 -15.48353 -14.82694 -14.79917 -14.57618 -14.50392 -14.15138 -13.88667 -13.62261 -13.44981 -13.30409 -13.04764 -12.90840 -12.77365 -12.59053 -12.31037 -11.96915 -11.84264 -11.55971 -11.39643 -11.19864 -11.03909 -10.88795 -10.84645 -10.58286 -10.49378 -10.36059 -10.18588 -10.06090 -9.52483 -9.46518 -9.23429 -9.05242 -8.45683 -8.38688 -8.17234 -6.52398 -5.87775 -3.46969 1.78114 2.40294 2.72530 3.20636 3.32418 3.37228 3.39482 3.82202 4.35729 4.39088 4.69188 4.71832 4.85463 4.98879 5.06535 5.10800 5.12046 5.20943 5.27495 5.32282 5.51599 5.57853 5.64737 5.72929 5.82848 5.89037 5.97053 6.06713 6.08137 6.17109 6.22787 6.25656 6.37952 6.42882 6.44606 6.51128 6.52218 6.60018 6.65842 6.85022 6.89854 7.10137 7.19041 7.31556 7.60453 7.76684 8.05077 8.15039 8.41875 8.82118 9.09491 9.68218 10.33163 11.17955 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.003152 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.394115 B = 8880.093438 C = 9985.638950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 H 0.089 0.911 4 C -0.021 4.021 5 C -0.224 4.224 6 C 0.056 3.944 7 N -0.301 5.301 8 N -0.382 5.382 9 C 0.104 3.896 10 C 0.052 3.948 11 C 0.513 3.487 12 O -0.556 6.556 13 N -0.700 5.700 14 C 0.138 3.862 15 C 0.123 3.877 16 H 0.038 0.962 17 C 0.056 3.944 18 O -0.399 6.399 19 C 0.050 3.950 20 C 0.131 3.869 21 N -0.586 5.586 22 C -0.266 4.266 23 H 0.081 0.919 24 C 0.017 3.983 25 N -0.895 5.895 26 Si 0.892 3.108 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.182 0.818 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.172 0.828 40 H 0.404 0.596 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.007 0.993 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.660 9.321 12.022 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.060 4.060 5 C -0.235 4.235 6 C -0.130 4.130 7 N -0.123 5.123 8 N -0.164 5.164 9 C -0.038 4.038 10 C -0.094 4.094 11 C 0.298 3.702 12 O -0.435 6.435 13 N -0.351 5.351 14 C 0.014 3.986 15 C 0.017 3.983 16 H 0.056 0.944 17 C -0.023 4.023 18 O -0.318 6.318 19 C -0.028 4.028 20 C 0.006 3.994 21 N -0.311 5.311 22 C -0.396 4.396 23 H 0.098 0.902 24 C -0.184 4.184 25 N -0.538 5.538 26 Si 0.721 3.279 27 H -0.206 1.206 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.199 0.801 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.189 0.811 40 H 0.240 0.760 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.114 0.886 48 H 0.025 0.975 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.522 9.169 13.018 17.610 hybrid contribution -0.678 -0.468 0.047 0.825 sum 6.844 8.701 13.066 17.125 Atomic orbital electron populations 1.21852 0.92862 1.03119 1.02600 1.21252 0.97848 1.00218 0.92929 0.89282 1.19674 1.01139 0.97439 0.87759 1.20139 0.96909 1.03854 1.02606 1.23869 0.98323 0.98128 0.92718 1.77346 1.02278 1.09492 1.23165 1.48426 1.14827 1.30201 1.22991 1.21802 1.01470 0.88059 0.92451 1.22330 0.98834 0.97882 0.90326 1.20508 0.80216 0.84692 0.84734 1.90643 1.39182 1.26612 1.87015 1.46011 1.52123 1.31657 1.05295 1.21183 0.95774 0.98322 0.83340 1.21569 0.87469 0.96700 0.92598 0.94415 1.22849 0.94472 0.98156 0.86849 1.87748 1.22091 1.79927 1.42043 1.23016 0.80390 1.00781 0.98600 1.21428 0.98736 0.93789 0.85461 1.44104 0.98632 1.75530 1.12855 1.19435 1.14068 1.19208 0.86858 0.90220 1.25377 1.00985 0.95702 0.96288 1.69903 1.31336 1.29617 1.22913 0.86549 0.80262 0.78157 0.82920 1.20645 1.21690 1.20354 0.91780 0.91567 0.91952 0.90441 0.90705 0.80098 0.91012 0.89607 0.89464 0.81087 0.75976 0.92891 0.90403 0.90614 0.93256 0.92014 0.91123 0.88572 0.97524 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.73 37.16 0.32 -1.77 16 2 C -0.10 -1.37 2.71 -91.77 -0.25 -1.62 16 3 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.02 -0.27 4.52 -27.88 -0.13 -0.40 16 5 C -0.22 -2.64 4.78 -105.05 -0.50 -3.15 16 6 C 0.06 0.69 10.63 -17.37 -0.18 0.51 16 7 N -0.30 -3.95 12.58 30.62 0.39 -3.56 16 8 N -0.38 -4.01 4.01 -68.16 -0.27 -4.28 16 9 C 0.10 0.62 11.47 59.85 0.69 1.31 16 10 C 0.05 0.52 11.40 -17.22 -0.20 0.33 16 11 C 0.51 8.88 7.15 -10.99 -0.08 8.80 16 12 O -0.56 -11.44 15.91 5.56 0.09 -11.35 16 13 N -0.70 -12.18 3.27 -60.29 -0.20 -12.37 16 14 C 0.14 2.59 4.57 -4.04 -0.02 2.57 16 15 C 0.12 2.41 3.17 -67.42 -0.21 2.20 16 16 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 17 C 0.06 1.07 6.29 37.31 0.23 1.30 16 18 O -0.40 -8.26 10.74 -35.23 -0.38 -8.64 16 19 C 0.05 1.04 6.99 37.31 0.26 1.30 16 20 C 0.13 2.96 5.93 -3.53 -0.02 2.94 16 21 N -0.59 -13.36 2.97 -164.29 -0.49 -13.85 16 22 C -0.27 -6.48 7.91 -15.06 -0.12 -6.60 16 23 H 0.08 1.83 4.16 -52.49 -0.22 1.61 16 24 C 0.02 0.44 5.07 -17.43 -0.09 0.35 16 25 N -0.90 -24.24 11.40 55.49 0.63 -23.60 16 26 Si 0.89 20.71 29.57 -169.99 -5.03 15.68 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.06 0.82 6.42 -51.93 -0.33 0.49 16 31 H 0.07 0.98 6.93 -51.93 -0.36 0.62 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.96 7.95 -51.93 -0.41 0.55 16 35 H 0.18 1.99 8.06 -52.48 -0.42 1.56 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.40 6.68 6.84 -40.82 -0.28 6.40 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.73 7.88 -51.93 -0.41 1.33 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 47 H 0.10 2.40 6.02 -51.93 -0.31 2.09 16 48 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 49 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 389.54 15.07 5.87 5.87 Total: -1.00 -31.67 389.54 -7.48 -39.15 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.80 Total: 8.89 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -0.29 Total: 8.08 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.06 Total: -57.67 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.29 Total: -20.00 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.67 -7.48 -39.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717140071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.346 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds