Wall clock time and date at job start Tue Mar 31 2020 20:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46674 * 2 1 4 4 C 1.52997 * 109.47225 * 120.00380 * 2 1 3 5 5 C 1.50701 * 109.46904 * 295.00137 * 4 2 1 6 6 C 1.39867 * 126.04260 * 90.02627 * 5 4 2 7 7 N 1.30837 * 108.20821 * 179.97438 * 6 5 4 8 8 N 1.40084 * 108.20125 * 0.02562 * 7 6 5 9 9 C 1.46508 * 126.03686 * 179.97438 * 8 7 6 10 10 C 1.34951 * 107.92894 * 359.75454 * 8 7 6 11 11 C 1.50699 * 109.46834 * 240.00491 * 2 1 3 12 12 O 1.21276 * 119.99837 * 239.99357 * 11 2 1 13 13 N 1.34778 * 120.00186 * 60.00193 * 11 2 1 14 14 C 1.46496 * 119.99740 * 179.97438 * 13 11 2 15 15 C 1.53009 * 109.46939 * 174.66637 * 14 13 11 16 16 H 1.08995 * 109.67287 * 56.80863 * 15 14 13 17 17 C 1.53298 * 109.67994 * 177.35916 * 15 14 13 18 18 O 1.42955 * 109.21957 * 172.02630 * 17 15 14 19 19 C 1.42964 * 114.17040 * 297.42252 * 18 17 15 20 20 C 1.53298 * 109.22305 * 62.58030 * 19 18 17 21 21 N 1.47145 * 109.67973 * 296.29015 * 15 14 13 22 22 C 1.36931 * 120.98703 * 9.71765 * 21 15 14 23 23 H 1.08002 * 120.00245 * 40.16021 * 22 21 15 24 24 C 1.38821 * 120.00037 * 220.15830 * 22 21 15 25 25 N 1.31613 * 120.00105 * 10.45952 * 24 22 21 26 26 Si 1.86804 * 120.00069 * 190.45494 * 24 22 21 27 27 H 1.48503 * 109.46883 * 59.99813 * 26 24 22 28 28 H 1.48488 * 109.47107 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46875 * 300.00563 * 26 24 22 30 30 H 1.09001 * 109.47352 * 299.99799 * 1 2 3 31 31 H 1.09002 * 109.47435 * 59.99931 * 1 2 3 32 32 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47483 * 54.99715 * 4 2 1 34 34 H 1.08995 * 109.47294 * 175.00342 * 4 2 1 35 35 H 1.08005 * 125.89866 * 359.95344 * 6 5 4 36 36 H 1.08995 * 109.46800 * 89.97369 * 9 8 7 37 37 H 1.09000 * 109.46932 * 209.97395 * 9 8 7 38 38 H 1.08999 * 109.46715 * 329.97277 * 9 8 7 39 39 H 1.07997 * 126.13226 * 180.24259 * 10 8 7 40 40 H 0.96994 * 120.00076 * 359.97438 * 13 11 2 41 41 H 1.08996 * 109.47834 * 294.67060 * 14 13 11 42 42 H 1.09004 * 109.47056 * 54.67369 * 14 13 11 43 43 H 1.08993 * 109.51437 * 291.95062 * 17 15 14 44 44 H 1.09002 * 109.51147 * 52.10503 * 17 15 14 45 45 H 1.09002 * 109.50982 * 302.65389 * 19 18 17 46 46 H 1.09000 * 109.55316 * 182.53209 * 19 18 17 47 47 H 1.09002 * 109.68076 * 187.97779 * 20 19 18 48 48 H 1.08996 * 109.71410 * 67.44155 * 20 19 18 49 49 H 0.97004 * 120.00584 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0569 2.4765 6 6 0.4575 -0.1032 3.2040 7 7 0.4705 0.7469 4.1984 8 7 1.6647 1.4765 4.1348 9 6 2.0796 2.5332 5.0609 10 6 2.3677 1.0307 3.0726 11 6 2.0323 -0.7103 -1.2305 12 8 2.7296 -1.6963 -1.1193 13 7 1.7067 -0.2497 -2.4546 14 6 2.1955 -0.9400 -3.6508 15 6 1.5789 -0.3003 -4.8965 16 1 1.8125 0.7641 -4.9162 17 6 2.1376 -0.9758 -6.1540 18 8 1.4232 -0.5036 -7.2987 19 6 0.0293 -0.8214 -7.2909 20 6 -0.6374 -0.1380 -6.0915 21 7 0.1194 -0.4871 -4.8787 22 6 -0.5157 -0.9720 -3.7667 23 1 -0.2079 -0.6466 -2.7839 24 6 -1.5554 -1.8819 -3.9025 25 7 -1.7971 -2.4352 -5.0720 26 14 -2.6112 -2.3210 -2.4254 27 1 -3.2719 -1.0959 -1.9075 28 1 -3.6444 -3.3073 -2.8312 29 1 -1.7562 -2.9090 -1.3631 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7199 1.2951 34 1 3.1263 -0.7995 1.2055 35 1 -0.3314 -0.8069 2.9828 36 1 2.6420 2.0939 5.8847 37 1 2.7077 3.2517 4.5344 38 1 1.1975 3.0399 5.4525 39 1 3.3356 1.3885 2.7540 40 1 1.1488 0.5387 -2.5436 41 1 3.2812 -0.8577 -3.6997 42 1 1.9125 -1.9916 -3.6045 43 1 3.1949 -0.7324 -6.2588 44 1 2.0185 -2.0560 -6.0705 45 1 -0.0975 -1.9011 -7.2115 46 1 -0.4307 -0.4676 -8.2135 47 1 -1.6658 -0.4862 -5.9955 48 1 -0.6275 0.9429 -6.2319 49 1 -2.5238 -3.0707 -5.1670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717140071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:31 Heat of formation + Delta-G solvation = 1.589443 kcal Electronic energy + Delta-G solvation = -30264.823668 eV Core-core repulsion = 26228.846041 eV Total energy + Delta-G solvation = -4035.977627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.15455 -40.92034 -39.85316 -36.92558 -36.05948 -35.25013 -33.83675 -33.15573 -32.12794 -31.19334 -29.00186 -28.32348 -27.15440 -26.56416 -25.14258 -24.11336 -23.09597 -21.94313 -21.40946 -21.15272 -20.46798 -18.88727 -17.94117 -17.35594 -17.27079 -17.12559 -16.48225 -16.35396 -16.25789 -16.10626 -15.75396 -15.46496 -15.29642 -15.09563 -14.66935 -14.62861 -14.34676 -14.07281 -13.73804 -13.62117 -13.36178 -13.22652 -13.09997 -13.00539 -12.95194 -12.80773 -12.69361 -12.39393 -12.22123 -12.05589 -11.97523 -11.89736 -11.81195 -11.41920 -11.18647 -10.87772 -10.63777 -10.32323 -10.28624 -9.70670 -9.24358 -8.39075 -7.82768 -5.42410 0.99043 1.44277 1.47353 1.49205 1.74325 1.79815 1.84667 2.44584 2.51275 3.08834 3.34425 3.50778 3.67560 3.88238 3.98409 4.10483 4.14896 4.17119 4.30181 4.36890 4.39347 4.47788 4.54158 4.56137 4.59994 4.66588 4.72611 4.73900 4.76113 4.78367 4.83875 4.92383 4.96219 4.98427 5.06141 5.20225 5.25419 5.30848 5.42161 5.44743 5.49158 5.65258 5.72232 5.81557 6.20700 6.38623 6.50524 6.75092 6.76895 7.18596 7.43354 7.80439 8.42486 9.20368 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.003152 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.394115 B = 8880.093438 C = 9985.638950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.120 0.880 4 C -0.010 4.010 5 C -0.242 4.242 6 C 0.043 3.957 7 N -0.335 5.335 8 N -0.381 5.381 9 C 0.094 3.906 10 C 0.066 3.934 11 C 0.509 3.491 12 O -0.591 6.591 13 N -0.698 5.698 14 C 0.147 3.853 15 C 0.126 3.874 16 H 0.059 0.941 17 C 0.055 3.945 18 O -0.399 6.399 19 C 0.060 3.940 20 C 0.132 3.868 21 N -0.601 5.601 22 C -0.254 4.254 23 H 0.094 0.906 24 C -0.034 4.034 25 N -0.923 5.923 26 Si 0.936 3.064 27 H -0.268 1.268 28 H -0.303 1.303 29 H -0.282 1.282 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.183 0.817 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.207 0.793 40 H 0.410 0.590 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.116 0.884 44 H 0.027 0.973 45 H 0.031 0.969 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.021 0.979 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.531 12.037 13.069 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.138 0.862 4 C -0.049 4.049 5 C -0.254 4.254 6 C -0.142 4.142 7 N -0.158 5.158 8 N -0.163 5.163 9 C -0.046 4.046 10 C -0.081 4.081 11 C 0.297 3.703 12 O -0.472 6.472 13 N -0.349 5.349 14 C 0.022 3.978 15 C 0.020 3.980 16 H 0.077 0.923 17 C -0.024 4.024 18 O -0.318 6.318 19 C -0.018 4.018 20 C 0.006 3.994 21 N -0.326 5.326 22 C -0.384 4.384 23 H 0.111 0.889 24 C -0.231 4.231 25 N -0.568 5.568 26 Si 0.766 3.234 27 H -0.194 1.194 28 H -0.230 1.230 29 H -0.209 1.209 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.200 0.800 36 H 0.103 0.897 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.224 0.776 40 H 0.247 0.753 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.134 0.866 44 H 0.045 0.955 45 H 0.049 0.951 46 H 0.114 0.886 47 H 0.087 0.913 48 H 0.038 0.962 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.391 11.928 14.090 20.712 hybrid contribution -1.154 -1.246 -0.235 1.714 sum 8.238 10.682 13.855 19.337 Atomic orbital electron populations 1.21796 0.93282 1.01693 1.03113 1.21248 0.97183 1.01384 0.91215 0.86192 1.19491 1.00917 0.96468 0.88074 1.20024 0.97412 1.05168 1.02785 1.23998 0.98902 0.98345 0.93000 1.77290 1.04158 1.10494 1.23816 1.48802 1.13943 1.30194 1.23380 1.22179 1.02144 0.87643 0.92663 1.22829 0.99430 0.96525 0.89280 1.21181 0.79384 0.84217 0.85511 1.90629 1.40838 1.28211 1.87507 1.46001 1.52118 1.31661 1.05111 1.21009 0.97115 0.95945 0.83725 1.21676 0.85395 0.97783 0.93169 0.92313 1.22973 0.96392 0.96809 0.86208 1.87752 1.21619 1.79747 1.42683 1.22855 0.80943 0.98757 0.99225 1.21354 0.97556 0.94413 0.86060 1.44312 1.00293 1.75463 1.12577 1.19807 1.13060 1.17572 0.87991 0.88903 1.25937 1.02742 0.96662 0.97771 1.70040 1.31830 1.30726 1.24206 0.85834 0.78874 0.77928 0.80804 1.19382 1.22983 1.20862 0.90143 0.92075 0.94335 0.92677 0.90535 0.80035 0.89731 0.86585 0.89421 0.77593 0.75271 0.90450 0.94499 0.86644 0.95498 0.95087 0.88580 0.91282 0.96164 0.94533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 8.73 71.98 0.63 -3.22 16 2 C -0.09 -2.26 2.71 -11.54 -0.03 -2.29 16 3 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 4 C -0.01 -0.26 4.52 29.85 0.13 -0.12 16 5 C -0.24 -5.30 4.78 -20.14 -0.10 -5.39 16 6 C 0.04 1.03 10.63 85.24 0.91 1.94 16 7 N -0.34 -8.37 12.58 -57.02 -0.72 -9.09 16 8 N -0.38 -6.98 4.01 -369.55 -1.48 -8.47 16 9 C 0.09 0.82 11.47 127.77 1.47 2.29 16 10 C 0.07 1.12 11.40 83.54 0.95 2.08 16 11 C 0.51 17.06 7.15 87.66 0.63 17.69 16 12 O -0.59 -24.14 15.91 -3.02 -0.05 -24.18 16 13 N -0.70 -23.22 3.27 -463.06 -1.52 -24.74 16 14 C 0.15 5.33 4.57 86.38 0.39 5.72 16 15 C 0.13 4.69 3.17 44.97 0.14 4.84 16 16 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 17 C 0.05 2.00 6.29 72.08 0.45 2.46 16 18 O -0.40 -15.79 10.74 -148.98 -1.60 -17.39 16 19 C 0.06 2.49 6.99 72.08 0.50 2.99 16 20 C 0.13 5.88 5.93 86.35 0.51 6.39 16 21 N -0.60 -27.06 2.97 -673.70 -2.00 -29.06 16 22 C -0.25 -12.37 7.91 84.04 0.66 -11.71 16 23 H 0.09 4.21 4.16 -2.91 -0.01 4.19 16 24 C -0.03 -1.80 5.07 84.87 0.43 -1.37 16 25 N -0.92 -51.57 11.40 21.65 0.25 -51.32 16 26 Si 0.94 43.46 29.57 68.60 2.03 45.48 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 29 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 30 H 0.08 1.94 6.42 -2.39 -0.02 1.92 16 31 H 0.06 1.71 6.93 -2.39 -0.02 1.69 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.85 7.95 -2.39 -0.02 1.83 16 35 H 0.18 4.06 8.06 -2.91 -0.02 4.03 16 36 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.41 12.67 6.84 -92.71 -0.63 12.04 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.66 7.88 -2.38 -0.02 1.64 16 43 H 0.12 3.30 8.14 -2.39 -0.02 3.29 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 47 H 0.07 3.50 6.02 -2.39 -0.01 3.49 16 48 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -69.95 389.54 2.92 -67.03 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.32 Total: 29.45 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 7.69 Total: 22.28 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -5.47 Total: -122.67 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.65 Total: -41.57 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.95 2.92 -67.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717140071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.622 kcal (2) G-P(sol) polarization free energy of solvation -69.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds