Wall clock time and date at job start Tue Mar 31 2020 20:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47074 * 2 1 4 4 C 1.53000 * 109.47304 * 119.99881 * 2 1 3 5 5 C 1.53001 * 109.46973 * 185.00291 * 4 2 1 6 6 C 1.52997 * 109.47144 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.47286 * 179.97438 * 6 5 4 8 8 C 1.36947 * 119.99760 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00272 * 0.02562 * 8 7 6 10 10 C 1.38817 * 119.99692 * 180.02562 * 8 7 6 11 11 N 1.31617 * 119.99725 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99832 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47026 * 90.00074 * 12 10 8 14 14 H 1.48502 * 109.46625 * 210.00046 * 12 10 8 15 15 H 1.48497 * 109.47278 * 329.99629 * 12 10 8 16 16 N 1.46501 * 109.47250 * 240.00349 * 2 1 3 17 17 C 1.34776 * 120.00305 * 84.99528 * 16 2 1 18 18 O 1.21282 * 119.99931 * 0.02562 * 17 16 2 19 19 C 1.50701 * 120.00080 * 180.02562 * 17 16 2 20 20 H 1.09000 * 109.46994 * 299.99979 * 19 17 16 21 21 C 1.52997 * 109.47098 * 59.99930 * 19 17 16 22 22 C 1.52995 * 109.47011 * 179.97438 * 19 17 16 23 23 C 1.50706 * 109.46956 * 174.99746 * 22 19 17 24 24 C 1.38217 * 120.01440 * 264.72725 * 23 22 19 25 25 C 1.38220 * 120.02348 * 179.72294 * 24 23 22 26 26 C 1.38268 * 120.05117 * 0.55140 * 25 24 23 27 27 C 1.38175 * 120.02636 * 359.72680 * 26 25 24 28 28 C 1.38438 * 120.01032 * 85.00026 * 23 22 19 29 29 F 1.35104 * 120.02728 * 359.97438 * 28 23 22 30 30 H 1.08994 * 109.47008 * 299.99806 * 1 2 3 31 31 H 1.08997 * 109.47242 * 60.00542 * 1 2 3 32 32 H 1.09005 * 109.47074 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47326 * 305.00436 * 4 2 1 34 34 H 1.08995 * 109.47216 * 65.00366 * 4 2 1 35 35 H 1.09004 * 109.47308 * 299.99649 * 5 4 2 36 36 H 1.09001 * 109.47493 * 60.00100 * 5 4 2 37 37 H 1.09004 * 109.46957 * 300.00021 * 6 5 4 38 38 H 1.09008 * 109.47484 * 59.99582 * 6 5 4 39 39 H 0.97000 * 120.00225 * 359.97438 * 7 6 5 40 40 H 0.97006 * 119.99866 * 179.97438 * 11 10 8 41 41 H 0.97006 * 119.99461 * 264.99550 * 16 2 1 42 42 H 1.09004 * 109.47334 * 180.02562 * 21 19 17 43 43 H 1.09007 * 109.47386 * 300.00184 * 21 19 17 44 44 H 1.09000 * 109.47158 * 60.00150 * 21 19 17 45 45 H 1.08999 * 109.46886 * 55.00494 * 22 19 17 46 46 H 1.08999 * 109.47559 * 294.99725 * 22 19 17 47 47 H 1.08004 * 119.98603 * 0.02562 * 24 23 22 48 48 H 1.07996 * 119.97659 * 180.26103 * 25 24 23 49 49 H 1.08004 * 119.98702 * 179.74977 * 26 25 24 50 50 H 1.07998 * 120.01415 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6131 1.3136 6 6 4.0750 -1.3349 2.5625 7 7 5.5350 -1.2319 2.6239 8 6 6.2189 -1.8063 3.6621 9 1 5.6819 -2.3354 4.4354 10 6 7.6024 -1.7083 3.7206 11 7 8.2568 -1.0638 2.7778 12 14 8.5352 -2.4923 5.1363 13 1 8.8975 -3.8872 4.7783 14 1 9.7706 -1.7137 5.4064 15 1 7.6792 -2.4990 6.3498 16 7 2.0184 -0.6905 -1.1962 17 6 2.1470 -0.0182 -2.3572 18 8 1.8589 1.1587 -2.4115 19 6 2.6488 -0.7287 -3.5878 20 1 3.6480 -1.1212 -3.3987 21 6 1.7044 -1.8823 -3.9314 22 6 2.6997 0.2543 -4.7591 23 6 3.3161 -0.4224 -5.9563 24 6 4.6666 -0.2781 -6.2130 25 6 5.2332 -0.9033 -7.3078 26 6 4.4478 -1.6644 -8.1538 27 6 3.0965 -1.8054 -7.9024 28 6 2.5288 -1.1842 -6.8027 29 9 1.2077 -1.3220 -6.5556 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2618 2.1369 34 1 1.7518 -1.7714 1.2056 35 1 3.9995 -1.0727 0.4259 36 1 3.8532 0.4371 1.3573 37 1 3.6403 -0.8758 3.4505 38 1 3.7867 -2.3852 2.5185 39 1 6.0174 -0.7570 1.9292 40 1 9.2235 -0.9950 2.8188 41 1 2.2491 -1.6317 -1.1526 42 1 2.0676 -2.3965 -4.8213 43 1 1.6676 -2.5827 -3.0970 44 1 0.7052 -1.4898 -4.1206 45 1 3.3014 1.1197 -4.4812 46 1 1.6887 0.5785 -5.0056 47 1 5.2802 0.3195 -5.5551 48 1 6.2892 -0.7934 -7.5052 49 1 4.8909 -2.1492 -9.0112 50 1 2.4833 -2.4003 -8.5631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717683847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:08 Heat of formation + Delta-G solvation = -75.359384 kcal Electronic energy + Delta-G solvation = -28553.501311 eV Core-core repulsion = 24494.266971 eV Total energy + Delta-G solvation = -4059.234340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.20441 -40.27084 -39.29043 -36.92155 -35.21351 -34.80885 -32.65024 -31.67256 -30.90989 -30.42407 -29.32757 -27.01236 -25.68983 -24.39505 -23.09445 -22.88532 -21.79762 -20.86042 -20.67469 -19.96068 -17.94338 -17.31805 -17.00558 -16.71932 -16.45650 -15.97043 -15.91984 -15.35335 -14.69508 -14.58026 -14.50161 -14.16114 -14.07226 -13.64938 -13.60371 -13.51109 -13.21953 -13.00017 -12.95743 -12.65882 -12.55386 -12.31917 -12.18250 -12.08597 -11.96106 -11.46002 -11.30129 -11.25682 -11.20517 -11.12366 -10.85829 -10.79330 -10.46356 -10.39040 -10.00818 -9.76886 -9.67849 -9.27965 -9.06915 -8.94470 -8.86035 -6.90865 -5.75669 -3.04251 0.81568 0.86807 2.62309 3.08352 3.29548 3.43615 3.48492 3.50521 3.94914 4.28467 4.40226 4.56246 4.57918 4.60548 4.70650 4.76198 4.86304 4.92637 5.00333 5.07188 5.16993 5.19072 5.39017 5.43641 5.49184 5.50085 5.57886 5.58929 5.61380 5.64869 5.74057 5.80598 5.83221 5.89630 5.91788 5.98061 6.04993 6.08254 6.12119 6.14025 6.22626 6.36806 6.41754 6.52340 6.56840 6.87411 6.90873 7.48098 7.70377 8.20471 8.43528 9.54254 10.13412 10.47751 11.47363 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.002296 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.507249 B =12189.558786 C =14195.116755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.720 5.720 17 C 0.521 3.479 18 O -0.543 6.543 19 C -0.107 4.107 20 H 0.101 0.899 21 C -0.145 4.145 22 C -0.061 4.061 23 C -0.112 4.112 24 C -0.087 4.087 25 C -0.127 4.127 26 C -0.097 4.097 27 C -0.155 4.155 28 C 0.101 3.899 29 F -0.136 7.136 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.401 0.599 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.135 0.865 48 H 0.130 0.870 49 H 0.131 0.869 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.554 -1.103 -22.296 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.208 1.208 16 N -0.371 5.371 17 C 0.307 3.693 18 O -0.420 6.420 19 C -0.128 4.128 20 H 0.119 0.881 21 C -0.202 4.202 22 C -0.099 4.099 23 C -0.113 4.113 24 C -0.105 4.105 25 C -0.145 4.145 26 C -0.115 4.115 27 C -0.174 4.174 28 C 0.081 3.919 29 F -0.115 7.115 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.235 0.765 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.153 0.847 48 H 0.148 0.852 49 H 0.149 0.851 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.788 -0.336 -22.139 26.626 hybrid contribution 0.702 -0.855 0.602 1.259 sum -14.086 -1.191 -21.537 25.762 Atomic orbital electron populations 1.22164 0.95527 1.01940 1.02348 1.21040 0.93561 0.97798 0.83985 0.89381 1.21847 0.96871 1.00747 0.96647 1.21726 0.93654 1.01417 0.99484 1.20651 0.86174 0.96425 0.94242 1.42384 1.00203 1.66237 1.29037 1.19248 0.89452 1.27033 1.01303 0.91222 1.24755 0.96458 1.01249 0.98691 1.69665 1.07179 1.47009 1.34435 0.86181 0.79514 0.78641 0.81823 1.21729 1.21749 1.20769 1.46108 1.67196 1.14163 1.09633 1.20494 0.77218 0.87123 0.84436 1.90690 1.50185 1.16000 1.85127 1.21294 1.01712 0.96949 0.92835 0.88056 1.21914 0.99336 0.96759 1.02232 1.20348 1.02436 0.97119 0.89989 1.19977 0.94349 0.99486 0.97505 1.21072 0.93395 0.98711 0.97303 1.21255 1.00477 0.97722 0.95080 1.21025 0.92787 0.98175 0.99499 1.21151 0.96432 1.02195 0.97626 1.17545 0.78018 0.99958 0.96345 1.91501 1.31772 1.94217 1.93978 0.91618 0.92367 0.92578 0.90324 0.91466 0.92087 0.91977 0.96510 0.96597 0.78348 0.93534 0.76484 0.91526 0.92062 0.91753 0.89342 0.89947 0.84743 0.85216 0.85137 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 2 C 0.14 1.63 2.57 -67.93 -0.17 1.45 16 3 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 4 C -0.12 -1.46 4.75 -26.73 -0.13 -1.58 16 5 C -0.12 -1.97 5.22 -26.73 -0.14 -2.11 16 6 C 0.15 3.07 6.26 -4.05 -0.03 3.04 16 7 N -0.73 -19.02 5.60 -59.91 -0.34 -19.36 16 8 C -0.24 -6.82 9.99 -15.05 -0.15 -6.97 16 9 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 12 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 N -0.72 -7.89 4.42 -53.80 -0.24 -8.13 16 17 C 0.52 6.42 7.12 -10.98 -0.08 6.35 16 18 O -0.54 -8.58 15.58 5.56 0.09 -8.50 16 19 C -0.11 -1.05 2.72 -91.77 -0.25 -1.30 16 20 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 21 C -0.14 -1.26 7.72 37.16 0.29 -0.97 16 22 C -0.06 -0.62 4.04 -27.88 -0.11 -0.73 16 23 C -0.11 -1.04 4.86 -104.55 -0.51 -1.54 16 24 C -0.09 -0.71 9.68 -39.60 -0.38 -1.09 16 25 C -0.13 -0.90 10.04 -39.58 -0.40 -1.30 16 26 C -0.10 -0.65 10.04 -39.59 -0.40 -1.04 16 27 C -0.16 -1.19 10.03 -39.52 -0.40 -1.58 16 28 C 0.10 0.93 5.86 -39.42 -0.23 0.70 16 29 F -0.14 -1.37 14.37 2.25 0.03 -1.34 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 39 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.40 3.69 8.02 -40.82 -0.33 3.36 16 42 H 0.07 0.58 5.62 -51.93 -0.29 0.29 16 43 H 0.06 0.46 7.57 -51.93 -0.39 0.06 16 44 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 45 H 0.09 0.94 7.86 -51.93 -0.41 0.53 16 46 H 0.08 0.91 7.79 -51.93 -0.40 0.50 16 47 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 48 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 49 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 50 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 409.17 15.07 6.17 6.17 Total: -1.00 -33.59 409.17 -9.80 -43.39 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -8.39 Total: 8.62 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -2.83 Total: -10.54 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.15 Total: -55.37 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.03 Total: -1.34 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.59 -9.80 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717683847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.973 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds