Wall clock time and date at job start Tue Mar 31 2020 20:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47074 * 2 1 4 4 C 1.53000 * 109.47304 * 119.99881 * 2 1 3 5 5 C 1.53001 * 109.46973 * 185.00291 * 4 2 1 6 6 C 1.52997 * 109.47144 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.47286 * 179.97438 * 6 5 4 8 8 C 1.36947 * 119.99760 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00272 * 0.02562 * 8 7 6 10 10 C 1.38817 * 119.99692 * 180.02562 * 8 7 6 11 11 N 1.31617 * 119.99725 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99832 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47026 * 90.00074 * 12 10 8 14 14 H 1.48502 * 109.46625 * 210.00046 * 12 10 8 15 15 H 1.48497 * 109.47278 * 329.99629 * 12 10 8 16 16 N 1.46501 * 109.47250 * 240.00349 * 2 1 3 17 17 C 1.34776 * 120.00305 * 84.99528 * 16 2 1 18 18 O 1.21282 * 119.99931 * 0.02562 * 17 16 2 19 19 C 1.50701 * 120.00080 * 180.02562 * 17 16 2 20 20 H 1.09000 * 109.46994 * 299.99979 * 19 17 16 21 21 C 1.52997 * 109.47098 * 59.99930 * 19 17 16 22 22 C 1.52995 * 109.47011 * 179.97438 * 19 17 16 23 23 C 1.50706 * 109.46956 * 174.99746 * 22 19 17 24 24 C 1.38217 * 120.01440 * 264.72725 * 23 22 19 25 25 C 1.38220 * 120.02348 * 179.72294 * 24 23 22 26 26 C 1.38268 * 120.05117 * 0.55140 * 25 24 23 27 27 C 1.38175 * 120.02636 * 359.72680 * 26 25 24 28 28 C 1.38438 * 120.01032 * 85.00026 * 23 22 19 29 29 F 1.35104 * 120.02728 * 359.97438 * 28 23 22 30 30 H 1.08994 * 109.47008 * 299.99806 * 1 2 3 31 31 H 1.08997 * 109.47242 * 60.00542 * 1 2 3 32 32 H 1.09005 * 109.47074 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47326 * 305.00436 * 4 2 1 34 34 H 1.08995 * 109.47216 * 65.00366 * 4 2 1 35 35 H 1.09004 * 109.47308 * 299.99649 * 5 4 2 36 36 H 1.09001 * 109.47493 * 60.00100 * 5 4 2 37 37 H 1.09004 * 109.46957 * 300.00021 * 6 5 4 38 38 H 1.09008 * 109.47484 * 59.99582 * 6 5 4 39 39 H 0.97000 * 120.00225 * 359.97438 * 7 6 5 40 40 H 0.97006 * 119.99866 * 179.97438 * 11 10 8 41 41 H 0.97006 * 119.99461 * 264.99550 * 16 2 1 42 42 H 1.09004 * 109.47334 * 180.02562 * 21 19 17 43 43 H 1.09007 * 109.47386 * 300.00184 * 21 19 17 44 44 H 1.09000 * 109.47158 * 60.00150 * 21 19 17 45 45 H 1.08999 * 109.46886 * 55.00494 * 22 19 17 46 46 H 1.08999 * 109.47559 * 294.99725 * 22 19 17 47 47 H 1.08004 * 119.98603 * 0.02562 * 24 23 22 48 48 H 1.07996 * 119.97659 * 180.26103 * 25 24 23 49 49 H 1.08004 * 119.98702 * 179.74977 * 26 25 24 50 50 H 1.07998 * 120.01415 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6131 1.3136 6 6 4.0750 -1.3349 2.5625 7 7 5.5350 -1.2319 2.6239 8 6 6.2189 -1.8063 3.6621 9 1 5.6819 -2.3354 4.4354 10 6 7.6024 -1.7083 3.7206 11 7 8.2568 -1.0638 2.7778 12 14 8.5352 -2.4923 5.1363 13 1 8.8975 -3.8872 4.7783 14 1 9.7706 -1.7137 5.4064 15 1 7.6792 -2.4990 6.3498 16 7 2.0184 -0.6905 -1.1962 17 6 2.1470 -0.0182 -2.3572 18 8 1.8589 1.1587 -2.4115 19 6 2.6488 -0.7287 -3.5878 20 1 3.6480 -1.1212 -3.3987 21 6 1.7044 -1.8823 -3.9314 22 6 2.6997 0.2543 -4.7591 23 6 3.3161 -0.4224 -5.9563 24 6 4.6666 -0.2781 -6.2130 25 6 5.2332 -0.9033 -7.3078 26 6 4.4478 -1.6644 -8.1538 27 6 3.0965 -1.8054 -7.9024 28 6 2.5288 -1.1842 -6.8027 29 9 1.2077 -1.3220 -6.5556 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2618 2.1369 34 1 1.7518 -1.7714 1.2056 35 1 3.9995 -1.0727 0.4259 36 1 3.8532 0.4371 1.3573 37 1 3.6403 -0.8758 3.4505 38 1 3.7867 -2.3852 2.5185 39 1 6.0174 -0.7570 1.9292 40 1 9.2235 -0.9950 2.8188 41 1 2.2491 -1.6317 -1.1526 42 1 2.0676 -2.3965 -4.8213 43 1 1.6676 -2.5827 -3.0970 44 1 0.7052 -1.4898 -4.1206 45 1 3.3014 1.1197 -4.4812 46 1 1.6887 0.5785 -5.0056 47 1 5.2802 0.3195 -5.5551 48 1 6.2892 -0.7934 -7.5052 49 1 4.8909 -2.1492 -9.0112 50 1 2.4833 -2.4003 -8.5631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717683847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:07 Heat of formation + Delta-G solvation = -94.571927 kcal Electronic energy + Delta-G solvation = -28554.334430 eV Core-core repulsion = 24494.266971 eV Total energy + Delta-G solvation = -4060.067459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.91029 -41.21311 -39.95479 -38.06675 -36.56213 -35.98804 -34.18962 -32.81900 -31.79868 -31.28681 -30.63866 -27.73248 -27.23627 -25.35261 -24.62055 -23.61691 -22.67045 -22.27552 -21.65162 -20.86089 -19.12931 -18.63127 -18.14653 -17.45782 -17.34159 -16.80968 -16.64152 -16.50399 -16.25676 -15.85481 -15.42484 -15.33858 -15.09033 -15.00157 -14.80023 -14.36415 -14.29588 -14.04582 -13.77364 -13.62249 -13.42892 -13.22017 -13.19125 -13.10949 -13.01518 -12.77356 -12.58592 -12.39034 -12.24061 -12.18139 -12.06845 -12.01206 -11.87675 -11.85137 -11.70800 -11.49331 -10.93440 -10.76537 -10.05825 -9.89158 -9.57720 -9.00857 -7.96009 -5.25339 0.20146 0.27523 1.46937 1.49061 1.57581 1.63786 2.20797 2.55635 2.67008 3.32470 3.37618 3.51255 3.65273 3.75363 3.79331 3.95843 3.97948 4.04469 4.10971 4.18213 4.29502 4.33061 4.38145 4.41463 4.46014 4.59024 4.67819 4.68625 4.78605 4.81495 4.82064 4.86936 4.92751 4.96755 5.01026 5.08796 5.12873 5.14620 5.20829 5.25837 5.30787 5.38309 5.42954 5.44815 5.50271 5.51553 5.60559 5.98033 6.26635 6.56448 7.25902 7.32101 8.09216 8.31409 9.27783 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.002296 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.507249 B =12189.558786 C =14195.116755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.112 4.112 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.247 4.247 9 H 0.077 0.923 10 C -0.079 4.079 11 N -0.971 5.971 12 Si 0.976 3.024 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.269 1.269 16 N -0.712 5.712 17 C 0.518 3.482 18 O -0.583 6.583 19 C -0.100 4.100 20 H 0.110 0.890 21 C -0.138 4.138 22 C -0.056 4.056 23 C -0.124 4.124 24 C -0.098 4.098 25 C -0.128 4.128 26 C -0.093 4.093 27 C -0.158 4.158 28 C 0.082 3.918 29 F -0.146 7.146 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.019 0.981 38 H 0.026 0.974 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.412 0.588 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.139 0.861 48 H 0.151 0.849 49 H 0.159 0.841 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.918 -2.998 -22.421 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.150 4.150 6 C 0.024 3.976 7 N -0.393 5.393 8 C -0.379 4.379 9 H 0.095 0.905 10 C -0.271 4.271 11 N -0.622 5.622 12 Si 0.804 3.196 13 H -0.211 1.211 14 H -0.222 1.222 15 H -0.194 1.194 16 N -0.364 5.364 17 C 0.305 3.695 18 O -0.463 6.463 19 C -0.121 4.121 20 H 0.128 0.872 21 C -0.195 4.195 22 C -0.094 4.094 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.146 4.146 26 C -0.111 4.111 27 C -0.177 4.177 28 C 0.063 3.937 29 F -0.125 7.125 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.248 0.752 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.157 0.843 48 H 0.169 0.831 49 H 0.177 0.823 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.199 -2.270 -22.246 27.038 hybrid contribution 0.789 -0.252 0.609 1.028 sum -14.410 -2.522 -21.636 26.118 Atomic orbital electron populations 1.22086 0.93956 1.02969 1.02185 1.20960 0.94686 0.96516 0.84022 0.91893 1.21743 0.93619 1.02204 0.97139 1.21584 0.96419 0.99658 0.97343 1.20857 0.83170 0.97405 0.96198 1.42653 1.02529 1.65924 1.28195 1.19675 0.90032 1.26381 1.01819 0.90543 1.25626 0.97529 1.02427 1.01476 1.69827 1.07089 1.48795 1.36466 0.85107 0.77843 0.77547 0.79078 1.21147 1.22191 1.19380 1.46080 1.66515 1.14624 1.09145 1.20926 0.76540 0.86708 0.85299 1.90670 1.52052 1.17812 1.85787 1.21278 1.02280 0.97024 0.91548 0.87188 1.21860 0.98402 0.96343 1.02909 1.20224 1.01370 0.96997 0.90796 1.19923 0.94935 1.00206 0.97423 1.21235 0.93076 0.99196 0.98121 1.21564 1.01646 0.96987 0.94387 1.21394 0.92305 0.97448 0.99965 1.21425 0.97199 1.01894 0.97161 1.17765 0.77733 1.00925 0.97280 1.91471 1.32454 1.94384 1.94155 0.90414 0.93941 0.90884 0.89232 0.89372 0.92284 0.93640 0.96328 0.95623 0.79682 0.93976 0.75183 0.91343 0.90471 0.92594 0.90548 0.91531 0.84344 0.83125 0.82320 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.48 71.98 0.68 -2.21 16 2 C 0.14 3.17 2.57 44.99 0.12 3.29 16 3 H 0.06 1.75 7.58 -2.38 -0.02 1.73 16 4 C -0.11 -2.36 4.75 30.59 0.15 -2.21 16 5 C -0.11 -3.45 5.22 30.59 0.16 -3.29 16 6 C 0.15 5.86 6.26 86.38 0.54 6.40 16 7 N -0.75 -38.86 5.60 -343.44 -1.92 -40.78 16 8 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 9 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 10 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 11 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 12 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 N -0.71 -15.08 4.42 -442.53 -1.96 -17.04 16 17 C 0.52 12.99 7.12 87.66 0.62 13.61 16 18 O -0.58 -19.28 15.58 -3.04 -0.05 -19.32 16 19 C -0.10 -1.99 2.72 -11.54 -0.03 -2.03 16 20 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 21 C -0.14 -2.31 7.72 71.98 0.56 -1.75 16 22 C -0.06 -1.20 4.04 29.85 0.12 -1.08 16 23 C -0.12 -2.32 4.86 -19.82 -0.10 -2.42 16 24 C -0.10 -1.57 9.68 22.26 0.22 -1.36 16 25 C -0.13 -1.59 10.04 22.27 0.22 -1.37 16 26 C -0.09 -1.04 10.04 22.26 0.22 -0.81 16 27 C -0.16 -2.19 10.03 22.31 0.22 -1.97 16 28 C 0.08 1.50 5.86 22.37 0.13 1.63 16 29 F -0.15 -2.98 14.37 44.97 0.65 -2.33 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.83 7.75 -2.39 -0.02 1.81 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.37 20.58 7.67 -92.71 -0.71 19.87 16 40 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 41 H 0.41 6.88 8.02 -92.70 -0.74 6.14 16 42 H 0.07 1.15 5.62 -2.38 -0.01 1.14 16 43 H 0.08 1.02 7.57 -2.38 -0.02 1.01 16 44 H 0.05 1.03 7.88 -2.39 -0.02 1.02 16 45 H 0.08 1.77 7.86 -2.39 -0.02 1.75 16 46 H 0.07 1.60 7.79 -2.39 -0.02 1.58 16 47 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 48 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 49 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 50 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -72.98 409.17 3.65 -69.33 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -0.52 Total: 34.54 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 5.14 Total: -12.82 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -3.60 Total: -117.68 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.65 Total: -2.33 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -72.98 3.65 -69.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717683847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.241 kcal (2) G-P(sol) polarization free energy of solvation -72.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds