Wall clock time and date at job start Tue Mar 31 2020 20:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46692 * 2 1 4 4 C 1.52998 * 109.47344 * 239.99829 * 2 1 3 5 5 C 1.52997 * 109.47194 * 174.99719 * 4 2 1 6 6 C 1.52998 * 109.47194 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47101 * 179.97438 * 6 5 4 8 8 C 1.36935 * 119.99928 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00329 * 0.02562 * 8 7 6 10 10 C 1.38816 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.31620 * 119.99630 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00075 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47436 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47505 * 119.99742 * 12 10 8 15 15 H 1.48506 * 109.47109 * 239.99962 * 12 10 8 16 16 N 1.46500 * 109.47133 * 119.99629 * 2 1 3 17 17 C 1.34779 * 120.00165 * 275.00058 * 16 2 1 18 18 O 1.21282 * 119.99927 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00033 * 179.97438 * 17 16 2 20 20 H 1.08993 * 109.47512 * 60.00410 * 19 17 16 21 21 C 1.52997 * 109.47078 * 300.00110 * 19 17 16 22 22 C 1.53006 * 109.46866 * 180.02562 * 19 17 16 23 23 C 1.50699 * 109.46610 * 185.00088 * 22 19 17 24 24 C 1.38224 * 120.00921 * 264.72258 * 23 22 19 25 25 C 1.38232 * 120.02259 * 179.72609 * 24 23 22 26 26 C 1.38268 * 120.04702 * 0.55083 * 25 24 23 27 27 C 1.38171 * 120.02757 * 359.72917 * 26 25 24 28 28 C 1.38434 * 120.01447 * 85.00611 * 23 22 19 29 29 F 1.35100 * 120.02748 * 359.96723 * 28 23 22 30 30 H 1.09005 * 109.46692 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47323 * 300.00126 * 1 2 3 32 32 H 1.09001 * 109.47331 * 60.00393 * 1 2 3 33 33 H 1.08998 * 109.47310 * 294.99865 * 4 2 1 34 34 H 1.09000 * 109.47200 * 55.00012 * 4 2 1 35 35 H 1.09003 * 109.47554 * 300.00156 * 5 4 2 36 36 H 1.09001 * 109.47331 * 60.00016 * 5 4 2 37 37 H 1.08998 * 109.47310 * 300.00146 * 6 5 4 38 38 H 1.09000 * 109.47200 * 60.00293 * 6 5 4 39 39 H 0.97001 * 120.00073 * 0.02562 * 7 6 5 40 40 H 0.97008 * 119.99765 * 180.02562 * 11 10 8 41 41 H 0.96996 * 119.99985 * 95.00633 * 16 2 1 42 42 H 1.09004 * 109.47261 * 300.00035 * 21 19 17 43 43 H 1.09002 * 109.47153 * 60.00207 * 21 19 17 44 44 H 1.09001 * 109.47289 * 180.02562 * 21 19 17 45 45 H 1.08992 * 109.47046 * 304.99824 * 22 19 17 46 46 H 1.08997 * 109.47395 * 65.00364 * 22 19 17 47 47 H 1.07992 * 119.99261 * 0.02562 * 24 23 22 48 48 H 1.07999 * 119.97227 * 180.29663 * 25 24 23 49 49 H 1.08002 * 119.98172 * 179.74432 * 26 25 24 50 50 H 1.08005 * 120.01139 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0748 -1.3340 -2.5632 7 7 5.5348 -1.2300 -2.6252 8 6 6.2186 -1.8041 -3.6634 9 1 5.6816 -2.3332 -4.4368 10 6 7.6021 -1.7060 -3.7219 11 7 8.2564 -1.0608 -2.7797 12 14 8.5348 -2.4886 -5.1385 13 1 7.5745 -3.1494 -6.0586 14 1 9.2860 -1.4408 -5.8756 15 1 9.4855 -3.4983 -4.6075 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0181 2.3572 18 8 1.8581 1.1585 2.4117 19 6 2.6488 -0.7286 3.5878 20 1 3.6479 -1.1211 3.3988 21 6 1.7043 -1.8821 3.9315 22 6 2.6998 0.2545 4.7591 23 6 3.3160 -0.4222 5.9563 24 6 2.5069 -1.0024 6.9151 25 6 3.0721 -1.6282 8.0104 26 6 4.4468 -1.6645 8.1541 27 6 5.2574 -1.0800 7.1999 28 6 4.6925 -0.4578 6.0992 29 9 5.4842 0.1134 5.1654 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7517 -1.7715 -1.2055 34 1 1.6054 -0.2618 -2.1370 35 1 3.8532 0.4370 -1.3573 36 1 3.9995 -1.0727 -0.4259 37 1 3.7865 -2.3842 -2.5200 38 1 3.6402 -0.8741 -3.4507 39 1 6.0172 -0.7551 -1.9304 40 1 9.2232 -0.9919 -2.8207 41 1 2.2491 -1.6316 1.1527 42 1 0.7051 -1.4896 4.1206 43 1 1.6676 -2.5826 3.0971 44 1 2.0669 -2.3958 4.8219 45 1 3.3013 1.1198 4.4812 46 1 1.6888 0.5788 5.0055 47 1 1.4330 -0.9712 6.8059 48 1 2.4392 -2.0854 8.7566 49 1 4.8871 -2.1500 9.0125 50 1 6.3312 -1.1082 7.3126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717683850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:22 Heat of formation + Delta-G solvation = -77.140235 kcal Electronic energy + Delta-G solvation = -28567.899915 eV Core-core repulsion = 24508.588351 eV Total energy + Delta-G solvation = -4059.311564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.06034 -40.29173 -39.30061 -36.91649 -35.23100 -34.79903 -32.63737 -31.61842 -30.87147 -30.48648 -29.32097 -27.08458 -25.68141 -24.29204 -23.06407 -22.95079 -21.79011 -20.85304 -20.67323 -19.99648 -17.80698 -17.35333 -16.98875 -16.69725 -16.40605 -15.90672 -15.72101 -15.39913 -14.68315 -14.64329 -14.51956 -14.22959 -14.06978 -13.64283 -13.61017 -13.48258 -13.23399 -13.08449 -12.92962 -12.60395 -12.58962 -12.38506 -12.18534 -12.08977 -11.93309 -11.51071 -11.30667 -11.27500 -11.19416 -11.11982 -10.85507 -10.78536 -10.43802 -10.37982 -9.96822 -9.75841 -9.66628 -9.28010 -9.06739 -8.92714 -8.84905 -6.89002 -5.73735 -3.02464 0.82441 0.86750 2.62590 3.08326 3.29435 3.44634 3.49767 3.52437 3.99931 4.28224 4.41178 4.56056 4.56781 4.59445 4.70842 4.74154 4.83908 4.91543 5.01276 5.06774 5.17071 5.18617 5.36794 5.43507 5.44511 5.47782 5.58387 5.59975 5.62589 5.64676 5.71966 5.79134 5.82907 5.86597 5.91855 5.98539 6.03577 6.07534 6.09430 6.15138 6.23493 6.38202 6.43274 6.52559 6.57659 6.89011 6.92306 7.48243 7.72341 8.20742 8.45224 9.55973 10.15326 10.49598 11.49286 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.002430 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.657101 B =11519.428630 C =13687.518084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.122 4.122 5 C -0.125 4.125 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.292 1.292 16 N -0.720 5.720 17 C 0.521 3.479 18 O -0.542 6.542 19 C -0.107 4.107 20 H 0.100 0.900 21 C -0.145 4.145 22 C -0.061 4.061 23 C -0.113 4.113 24 C -0.088 4.088 25 C -0.131 4.131 26 C -0.096 4.096 27 C -0.153 4.153 28 C 0.103 3.897 29 F -0.133 7.133 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.400 0.600 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.132 0.868 48 H 0.128 0.872 49 H 0.131 0.869 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.922 -1.949 23.058 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.371 5.371 17 C 0.307 3.693 18 O -0.420 6.420 19 C -0.129 4.129 20 H 0.118 0.882 21 C -0.202 4.202 22 C -0.099 4.099 23 C -0.114 4.114 24 C -0.106 4.106 25 C -0.149 4.149 26 C -0.114 4.114 27 C -0.172 4.172 28 C 0.083 3.917 29 F -0.111 7.111 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.235 0.765 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.149 0.851 48 H 0.146 0.854 49 H 0.148 0.852 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.073 -1.160 22.872 28.565 hybrid contribution 1.171 -0.680 -0.748 1.548 sum -15.902 -1.840 22.124 27.308 Atomic orbital electron populations 1.22161 0.95521 1.01898 1.02336 1.21042 0.93542 0.97832 0.83998 0.89383 1.21845 0.96888 1.00717 0.96636 1.21729 0.93643 1.01464 0.99501 1.20647 0.86192 0.96406 0.94216 1.42397 1.00221 1.66236 1.29027 1.19287 0.89450 1.27002 1.01253 0.91174 1.24764 0.96474 1.01289 0.98677 1.69681 1.07127 1.47012 1.34382 0.86114 0.79895 0.78494 0.81680 1.20573 1.21853 1.21873 1.46103 1.67213 1.14154 1.09636 1.20485 0.77183 0.87128 0.84470 1.90690 1.50151 1.15964 1.85150 1.21274 1.01743 0.96959 0.92905 0.88208 1.21835 0.98966 0.96824 1.02577 1.20335 1.02264 0.97202 0.90058 1.19966 0.91679 1.01360 0.98356 1.20984 0.99906 0.96568 0.93124 1.21209 0.95109 1.00297 0.98328 1.21016 0.93540 0.98417 0.98454 1.21206 1.01300 1.00411 0.94255 1.17652 0.88110 0.97555 0.88351 1.91545 1.73615 1.82291 1.63696 0.92591 0.92388 0.91620 0.91474 0.90326 0.91967 0.92073 0.96608 0.96521 0.78325 0.93573 0.76501 0.92007 0.91913 0.91198 0.89555 0.89745 0.85052 0.85409 0.85151 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 2 C 0.14 1.63 2.57 -67.93 -0.17 1.46 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 4 C -0.12 -1.47 4.75 -26.73 -0.13 -1.60 16 5 C -0.13 -2.03 5.22 -26.73 -0.14 -2.17 16 6 C 0.15 3.12 6.26 -4.04 -0.03 3.09 16 7 N -0.73 -19.30 5.60 -59.91 -0.34 -19.64 16 8 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 9 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 10 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 11 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 12 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 N -0.72 -7.93 4.42 -53.81 -0.24 -8.17 16 17 C 0.52 6.48 7.12 -10.99 -0.08 6.40 16 18 O -0.54 -8.64 15.58 5.56 0.09 -8.56 16 19 C -0.11 -1.06 2.72 -91.77 -0.25 -1.31 16 20 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 21 C -0.14 -1.05 8.74 37.16 0.32 -0.73 16 22 C -0.06 -0.62 3.95 -27.88 -0.11 -0.73 16 23 C -0.11 -1.04 4.56 -104.56 -0.48 -1.52 16 24 C -0.09 -0.62 8.37 -39.59 -0.33 -0.96 16 25 C -0.13 -0.82 10.05 -39.57 -0.40 -1.22 16 26 C -0.10 -0.64 10.04 -39.59 -0.40 -1.04 16 27 C -0.15 -1.30 10.03 -39.52 -0.40 -1.70 16 28 C 0.10 1.07 7.24 -39.42 -0.29 0.79 16 29 F -0.13 -1.70 16.57 2.25 0.04 -1.66 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 40 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.40 3.70 8.02 -40.82 -0.33 3.38 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.41 7.57 -51.93 -0.39 0.01 16 44 H 0.07 0.47 6.52 -51.93 -0.34 0.13 16 45 H 0.09 1.06 7.61 -51.93 -0.39 0.66 16 46 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 47 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 49 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 50 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 413.25 15.07 6.23 6.23 Total: -1.00 -34.39 413.25 -9.73 -44.12 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.45 Total: 8.22 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.76 Total: -10.07 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.15 Total: -56.07 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.39 -9.73 -44.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717683850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.021 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds