Wall clock time and date at job start Tue Mar 31 2020 20:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46692 * 2 1 4 4 C 1.52998 * 109.47344 * 239.99829 * 2 1 3 5 5 C 1.52997 * 109.47194 * 174.99719 * 4 2 1 6 6 C 1.52998 * 109.47194 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47101 * 179.97438 * 6 5 4 8 8 C 1.36935 * 119.99928 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00329 * 0.02562 * 8 7 6 10 10 C 1.38816 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.31620 * 119.99630 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00075 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47436 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47505 * 119.99742 * 12 10 8 15 15 H 1.48506 * 109.47109 * 239.99962 * 12 10 8 16 16 N 1.46500 * 109.47133 * 119.99629 * 2 1 3 17 17 C 1.34779 * 120.00165 * 275.00058 * 16 2 1 18 18 O 1.21282 * 119.99927 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00033 * 179.97438 * 17 16 2 20 20 H 1.08993 * 109.47512 * 60.00410 * 19 17 16 21 21 C 1.52997 * 109.47078 * 300.00110 * 19 17 16 22 22 C 1.53006 * 109.46866 * 180.02562 * 19 17 16 23 23 C 1.50699 * 109.46610 * 185.00088 * 22 19 17 24 24 C 1.38224 * 120.00921 * 264.72258 * 23 22 19 25 25 C 1.38232 * 120.02259 * 179.72609 * 24 23 22 26 26 C 1.38268 * 120.04702 * 0.55083 * 25 24 23 27 27 C 1.38171 * 120.02757 * 359.72917 * 26 25 24 28 28 C 1.38434 * 120.01447 * 85.00611 * 23 22 19 29 29 F 1.35100 * 120.02748 * 359.96723 * 28 23 22 30 30 H 1.09005 * 109.46692 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47323 * 300.00126 * 1 2 3 32 32 H 1.09001 * 109.47331 * 60.00393 * 1 2 3 33 33 H 1.08998 * 109.47310 * 294.99865 * 4 2 1 34 34 H 1.09000 * 109.47200 * 55.00012 * 4 2 1 35 35 H 1.09003 * 109.47554 * 300.00156 * 5 4 2 36 36 H 1.09001 * 109.47331 * 60.00016 * 5 4 2 37 37 H 1.08998 * 109.47310 * 300.00146 * 6 5 4 38 38 H 1.09000 * 109.47200 * 60.00293 * 6 5 4 39 39 H 0.97001 * 120.00073 * 0.02562 * 7 6 5 40 40 H 0.97008 * 119.99765 * 180.02562 * 11 10 8 41 41 H 0.96996 * 119.99985 * 95.00633 * 16 2 1 42 42 H 1.09004 * 109.47261 * 300.00035 * 21 19 17 43 43 H 1.09002 * 109.47153 * 60.00207 * 21 19 17 44 44 H 1.09001 * 109.47289 * 180.02562 * 21 19 17 45 45 H 1.08992 * 109.47046 * 304.99824 * 22 19 17 46 46 H 1.08997 * 109.47395 * 65.00364 * 22 19 17 47 47 H 1.07992 * 119.99261 * 0.02562 * 24 23 22 48 48 H 1.07999 * 119.97227 * 180.29663 * 25 24 23 49 49 H 1.08002 * 119.98172 * 179.74432 * 26 25 24 50 50 H 1.08005 * 120.01139 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0748 -1.3340 -2.5632 7 7 5.5348 -1.2300 -2.6252 8 6 6.2186 -1.8041 -3.6634 9 1 5.6816 -2.3332 -4.4368 10 6 7.6021 -1.7060 -3.7219 11 7 8.2564 -1.0608 -2.7797 12 14 8.5348 -2.4886 -5.1385 13 1 7.5745 -3.1494 -6.0586 14 1 9.2860 -1.4408 -5.8756 15 1 9.4855 -3.4983 -4.6075 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0181 2.3572 18 8 1.8581 1.1585 2.4117 19 6 2.6488 -0.7286 3.5878 20 1 3.6479 -1.1211 3.3988 21 6 1.7043 -1.8821 3.9315 22 6 2.6998 0.2545 4.7591 23 6 3.3160 -0.4222 5.9563 24 6 2.5069 -1.0024 6.9151 25 6 3.0721 -1.6282 8.0104 26 6 4.4468 -1.6645 8.1541 27 6 5.2574 -1.0800 7.1999 28 6 4.6925 -0.4578 6.0992 29 9 5.4842 0.1134 5.1654 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7517 -1.7715 -1.2055 34 1 1.6054 -0.2618 -2.1370 35 1 3.8532 0.4370 -1.3573 36 1 3.9995 -1.0727 -0.4259 37 1 3.7865 -2.3842 -2.5200 38 1 3.6402 -0.8741 -3.4507 39 1 6.0172 -0.7551 -1.9304 40 1 9.2232 -0.9919 -2.8207 41 1 2.2491 -1.6316 1.1527 42 1 0.7051 -1.4896 4.1206 43 1 1.6676 -2.5826 3.0971 44 1 2.0669 -2.3958 4.8219 45 1 3.3013 1.1198 4.4812 46 1 1.6888 0.5788 5.0055 47 1 1.4330 -0.9712 6.8059 48 1 2.4392 -2.0854 8.7566 49 1 4.8871 -2.1500 9.0125 50 1 6.3312 -1.1082 7.3126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717683850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:21 Heat of formation + Delta-G solvation = -97.475044 kcal Electronic energy + Delta-G solvation = -28568.781698 eV Core-core repulsion = 24508.588351 eV Total energy + Delta-G solvation = -4060.193347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.91468 -41.22879 -39.97352 -38.07570 -36.57573 -35.99168 -34.20458 -32.80631 -31.68504 -31.38143 -30.64861 -27.75034 -27.24716 -25.28322 -24.57841 -23.67475 -22.67234 -22.29270 -21.66143 -20.89941 -19.14662 -18.52281 -18.21320 -17.44642 -17.38099 -16.72604 -16.56928 -16.49915 -16.30264 -15.90286 -15.45103 -15.34951 -15.12431 -15.09068 -14.80268 -14.39267 -14.26846 -14.08361 -13.82114 -13.63049 -13.44548 -13.24222 -13.16767 -13.04776 -12.98172 -12.81702 -12.54408 -12.40257 -12.22391 -12.21161 -12.07014 -12.00999 -11.88141 -11.85621 -11.72941 -11.50048 -10.96419 -10.75850 -10.06251 -9.87658 -9.58847 -9.02989 -7.97529 -5.27343 0.20002 0.27891 1.45441 1.47054 1.57293 1.63483 2.20789 2.54210 2.67621 3.34592 3.36197 3.51235 3.64529 3.74890 3.80633 3.92673 3.99180 4.08070 4.09199 4.18647 4.28522 4.34765 4.38441 4.41617 4.44885 4.57694 4.67752 4.72724 4.80522 4.81814 4.84713 4.86083 4.92786 4.99345 5.02432 5.08019 5.12250 5.15739 5.23752 5.29667 5.31479 5.36644 5.41217 5.45124 5.48634 5.50219 5.60030 5.98552 6.24810 6.55855 7.25489 7.29983 8.07081 8.29095 9.26545 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.002430 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.657101 B =11519.428630 C =13687.518084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 H 0.059 0.941 4 C -0.108 4.108 5 C -0.113 4.113 6 C 0.150 3.850 7 N -0.752 5.752 8 C -0.246 4.246 9 H 0.078 0.922 10 C -0.081 4.081 11 N -0.973 5.973 12 Si 0.977 3.023 13 H -0.263 1.263 14 H -0.293 1.293 15 H -0.292 1.292 16 N -0.712 5.712 17 C 0.517 3.483 18 O -0.583 6.583 19 C -0.102 4.102 20 H 0.090 0.910 21 C -0.137 4.137 22 C -0.056 4.056 23 C -0.121 4.121 24 C -0.086 4.086 25 C -0.123 4.123 26 C -0.093 4.093 27 C -0.163 4.163 28 C 0.065 3.935 29 F -0.159 7.159 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.027 0.973 38 H 0.020 0.980 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.411 0.589 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.154 0.846 48 H 0.161 0.839 49 H 0.159 0.841 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.107 -4.403 23.750 30.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.037 3.963 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.377 4.377 9 H 0.096 0.904 10 C -0.273 4.273 11 N -0.624 5.624 12 Si 0.806 3.194 13 H -0.187 1.187 14 H -0.221 1.221 15 H -0.219 1.219 16 N -0.364 5.364 17 C 0.304 3.696 18 O -0.464 6.464 19 C -0.123 4.123 20 H 0.108 0.892 21 C -0.194 4.194 22 C -0.094 4.094 23 C -0.122 4.122 24 C -0.104 4.104 25 C -0.140 4.140 26 C -0.111 4.111 27 C -0.182 4.182 28 C 0.046 3.954 29 F -0.137 7.137 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.248 0.752 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.109 0.891 47 H 0.172 0.828 48 H 0.178 0.822 49 H 0.176 0.824 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.305 -3.655 23.545 30.666 hybrid contribution 1.801 0.089 -0.911 2.020 sum -17.504 -3.566 22.634 28.834 Atomic orbital electron populations 1.22072 0.93546 1.03107 1.02271 1.20971 0.94975 0.96351 0.83994 0.92232 1.21748 0.93355 1.02320 0.97240 1.21594 0.96688 0.99539 0.97305 1.20861 0.83122 0.97451 0.96149 1.42685 1.02611 1.65931 1.28186 1.19724 0.90018 1.26279 1.01722 0.90364 1.25667 0.97585 1.02493 1.01541 1.69850 1.07058 1.48902 1.36551 0.85015 0.78439 0.77338 0.78619 1.18719 1.22064 1.21865 1.46079 1.66538 1.14609 1.09145 1.20959 0.76493 0.86716 0.85407 1.90667 1.52104 1.17757 1.85839 1.21254 1.01823 0.97598 0.91627 0.89166 1.21818 0.98457 0.95712 1.03456 1.20221 1.01912 0.96337 0.90881 1.19946 0.91381 1.02205 0.98688 1.21263 1.00799 0.95762 0.92592 1.21624 0.95279 0.98918 0.98211 1.21398 0.93835 0.97425 0.98454 1.21413 1.02048 1.00546 0.94183 1.18087 0.88716 0.99449 0.89133 1.91472 1.74362 1.83068 1.64837 0.90657 0.93689 0.90496 0.89187 0.89135 0.93873 0.92599 0.95485 0.96174 0.79815 0.94015 0.75217 0.91205 0.90768 0.90197 0.92916 0.89148 0.82850 0.82162 0.82368 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.48 71.98 0.68 -2.06 16 2 C 0.14 3.20 2.57 44.99 0.12 3.31 16 3 H 0.06 1.71 7.58 -2.38 -0.02 1.69 16 4 C -0.11 -2.41 4.75 30.59 0.15 -2.26 16 5 C -0.11 -3.64 5.22 30.59 0.16 -3.48 16 6 C 0.15 6.02 6.26 86.38 0.54 6.56 16 7 N -0.75 -39.88 5.60 -343.44 -1.92 -41.80 16 8 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 9 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 10 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 11 N -0.97 -61.66 13.06 21.65 0.28 -61.38 16 12 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 13 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 15 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 16 N -0.71 -15.39 4.42 -442.53 -1.96 -17.34 16 17 C 0.52 13.22 7.12 87.66 0.62 13.84 16 18 O -0.58 -19.60 15.58 -3.04 -0.05 -19.65 16 19 C -0.10 -2.05 2.72 -11.54 -0.03 -2.09 16 20 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 21 C -0.14 -1.77 8.74 71.98 0.63 -1.14 16 22 C -0.06 -1.20 3.95 29.85 0.12 -1.08 16 23 C -0.12 -2.26 4.56 -19.82 -0.09 -2.35 16 24 C -0.09 -1.05 8.37 22.27 0.19 -0.87 16 25 C -0.12 -1.14 10.05 22.28 0.22 -0.92 16 26 C -0.09 -1.03 10.04 22.26 0.22 -0.81 16 27 C -0.16 -2.76 10.03 22.31 0.22 -2.54 16 28 C 0.07 1.44 7.24 22.37 0.16 1.61 16 29 F -0.16 -4.52 16.57 44.97 0.75 -3.78 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.84 7.75 -2.39 -0.02 1.82 16 37 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.37 21.18 7.67 -92.71 -0.71 20.47 16 40 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 41 H 0.41 7.05 8.02 -92.71 -0.74 6.31 16 42 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.07 0.79 7.57 -2.39 -0.02 0.77 16 44 H 0.08 0.89 6.52 -2.39 -0.02 0.88 16 45 H 0.05 1.46 7.61 -2.39 -0.02 1.44 16 46 H 0.09 1.76 8.05 -2.39 -0.02 1.74 16 47 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 48 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 49 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 50 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -77.12 413.25 3.82 -73.30 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.52 Total: 33.48 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 5.22 Total: -11.89 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -3.60 Total: -120.52 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.05 Total: -19.65 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.75 Total: -3.78 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -77.12 3.82 -73.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717683850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.176 kcal (2) G-P(sol) polarization free energy of solvation -77.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds