Wall clock time and date at job start Tue Mar 31 2020 20:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46952 * 2 1 4 4 C 1.52995 * 109.47368 * 239.99926 * 2 1 3 5 5 N 1.46497 * 109.47175 * 185.00113 * 4 2 1 6 6 C 1.46497 * 119.99922 * 269.99767 * 5 4 2 7 7 C 1.34779 * 119.99855 * 90.00372 * 5 4 2 8 8 O 1.21277 * 120.00268 * 4.01843 * 7 5 4 9 9 C 1.50701 * 119.99659 * 184.02690 * 7 5 4 10 10 H 1.08998 * 109.47470 * 314.14205 * 9 7 5 11 11 C 1.53002 * 109.47271 * 74.14526 * 9 7 5 12 12 C 1.53001 * 109.46888 * 194.14561 * 9 7 5 13 13 C 1.53006 * 109.47092 * 175.00126 * 12 9 7 14 14 C 1.50706 * 109.46872 * 179.97438 * 13 12 9 15 15 C 1.38260 * 119.98694 * 269.95095 * 14 13 12 16 16 C 1.38221 * 120.05329 * 180.02562 * 15 14 13 17 17 C 1.38219 * 120.02213 * 0.04523 * 16 15 14 18 18 C 1.38439 * 119.97754 * 359.97438 * 17 16 15 19 19 F 1.35095 * 120.02637 * 180.02562 * 18 17 16 20 20 C 1.38180 * 119.98422 * 89.99917 * 14 13 12 21 21 N 1.46501 * 109.46696 * 119.99773 * 2 1 3 22 22 C 1.36931 * 120.00417 * 274.99731 * 21 2 1 23 23 H 1.08009 * 119.99559 * 0.02562 * 22 21 2 24 24 C 1.38808 * 120.00485 * 180.02562 * 22 21 2 25 25 N 1.31625 * 119.99892 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 120.00100 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47096 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47002 * 119.99834 * 26 24 22 29 29 H 1.48493 * 109.46770 * 239.99582 * 26 24 22 30 30 H 1.08997 * 109.47138 * 299.99958 * 1 2 3 31 31 H 1.08997 * 109.47028 * 60.00307 * 1 2 3 32 32 H 1.08999 * 109.46579 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47203 * 64.99863 * 4 2 1 34 34 H 1.09005 * 109.47076 * 305.00030 * 4 2 1 35 35 H 1.09001 * 109.47331 * 264.35724 * 6 5 4 36 36 H 1.08994 * 109.47158 * 24.36244 * 6 5 4 37 37 H 1.09004 * 109.47021 * 144.36397 * 6 5 4 38 38 H 1.09003 * 109.47043 * 188.36927 * 11 9 7 39 39 H 1.08994 * 109.47194 * 308.36759 * 11 9 7 40 40 H 1.09001 * 109.47061 * 68.37390 * 11 9 7 41 41 H 1.09002 * 109.47686 * 55.00019 * 12 9 7 42 42 H 1.09001 * 109.46867 * 294.99291 * 12 9 7 43 43 H 1.08991 * 109.47372 * 59.99684 * 13 12 9 44 44 H 1.09001 * 109.46583 * 299.99339 * 13 12 9 45 45 H 1.08000 * 119.97160 * 0.02562 * 15 14 13 46 46 H 1.07997 * 119.98726 * 180.02562 * 16 15 14 47 47 H 1.08008 * 120.01195 * 179.97438 * 17 16 15 48 48 H 1.07995 * 120.01355 * 0.25127 * 20 14 13 49 49 H 0.97006 * 119.99936 * 95.00909 * 21 2 1 50 50 H 0.97003 * 119.99628 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.3344 0.2340 -1.7612 7 6 4.0758 -1.8987 -0.6115 8 8 3.3876 -2.8106 -0.2044 9 6 5.5746 -1.9645 -0.4697 10 1 6.0418 -1.6706 -1.4097 11 6 6.0240 -1.0145 0.6422 12 6 5.9914 -3.3942 -0.1184 13 6 7.5183 -3.4896 -0.0970 14 6 7.9287 -4.8977 0.2497 15 6 8.1195 -5.2563 1.5713 16 6 8.4964 -6.5472 1.8907 17 6 8.6840 -7.4808 0.8889 18 6 8.4937 -7.1228 -0.4347 19 9 8.6762 -8.0347 -1.4146 20 6 8.1152 -5.8294 -0.7535 21 7 2.0183 -0.6906 1.1962 22 6 2.1491 -0.0075 2.3758 23 1 1.8919 1.0404 2.4243 24 6 2.6122 -0.6617 3.5091 25 7 2.9251 -1.9388 3.4500 26 14 2.7899 0.2701 5.1184 27 1 2.3752 1.6823 4.9211 28 1 1.9296 -0.3592 6.1523 29 1 4.2068 0.2280 5.5608 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.7518 -0.1584 -2.1369 34 1 1.6055 -1.7198 -1.2951 35 1 4.6256 -0.0390 -2.7754 36 1 3.7713 1.1670 -1.7835 37 1 5.2271 0.3630 -1.1492 38 1 7.1121 -0.9489 0.6463 39 1 5.6011 -0.0252 0.4678 40 1 5.6792 -1.3926 1.6046 41 1 5.5948 -4.0822 -0.8651 42 1 5.5972 -3.6566 0.8633 43 1 7.9149 -2.8017 0.6496 44 1 7.9125 -3.2272 -1.0787 45 1 7.9738 -4.5272 2.3546 46 1 8.6447 -6.8263 2.9234 47 1 8.9789 -8.4894 1.1387 48 1 7.9708 -5.5477 -1.7860 49 1 2.2491 -1.6318 1.1527 50 1 3.2491 -2.3959 4.2419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717753979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:02 Heat of formation + Delta-G solvation = -56.908593 kcal Electronic energy + Delta-G solvation = -29871.146392 eV Core-core repulsion = 25812.712138 eV Total energy + Delta-G solvation = -4058.434254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.96700 -39.77774 -39.15346 -36.25421 -35.13046 -34.29364 -32.34454 -31.67049 -30.58866 -28.70953 -28.18467 -26.88528 -25.79726 -24.70175 -23.56689 -22.79269 -22.13424 -20.76630 -19.71402 -18.46480 -17.42622 -17.11038 -16.57463 -16.31507 -16.20974 -15.70313 -15.63364 -15.02832 -14.67580 -14.56860 -14.19859 -13.73249 -13.67071 -13.45225 -13.19286 -13.10296 -12.71102 -12.62583 -12.46169 -12.18920 -12.03223 -11.96103 -11.89673 -11.73872 -11.44043 -11.32709 -11.23135 -11.08073 -11.03018 -10.81307 -10.61651 -10.50632 -10.40312 -10.30267 -9.96217 -9.52268 -9.06642 -8.96561 -8.80456 -8.68997 -7.99874 -6.78899 -5.60393 -2.89704 1.09569 1.13267 3.30312 3.45385 3.48520 3.51977 3.53868 3.62587 4.14435 4.58081 4.66825 4.69416 4.89651 4.93573 5.11681 5.15106 5.27270 5.32275 5.38181 5.45277 5.50004 5.55398 5.62805 5.65779 5.67593 5.78367 5.82454 5.86132 5.88313 6.00465 6.01557 6.06635 6.08767 6.19214 6.20832 6.28409 6.30508 6.32455 6.44390 6.52412 6.65528 6.71228 6.82148 6.83831 6.86085 7.02445 7.21188 7.79199 7.96913 8.55833 8.89987 9.68415 10.31660 10.70464 11.59605 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.003227 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.420560 B = 8673.976476 C =10137.691702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 H 0.042 0.958 4 C 0.109 3.891 5 N -0.611 5.611 6 C 0.078 3.922 7 C 0.529 3.471 8 O -0.520 6.520 9 C -0.101 4.101 10 H 0.080 0.920 11 C -0.143 4.143 12 C -0.094 4.094 13 C -0.083 4.083 14 C -0.044 4.044 15 C -0.123 4.123 16 C -0.088 4.088 17 C -0.163 4.163 18 C 0.095 3.905 19 F -0.144 7.144 20 C -0.153 4.153 21 N -0.720 5.720 22 C -0.235 4.235 23 H 0.064 0.936 24 C -0.011 4.011 25 N -0.918 5.918 26 Si 0.895 3.105 27 H -0.283 1.283 28 H -0.294 1.294 29 H -0.294 1.294 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.398 0.602 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.221 -2.433 -11.380 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.060 0.940 4 C -0.014 4.014 5 N -0.344 5.344 6 C -0.065 4.065 7 C 0.316 3.684 8 O -0.394 6.394 9 C -0.122 4.122 10 H 0.098 0.902 11 C -0.200 4.200 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.044 4.044 15 C -0.141 4.141 16 C -0.106 4.106 17 C -0.182 4.182 18 C 0.076 3.924 19 F -0.123 7.123 20 C -0.172 4.172 21 N -0.365 5.365 22 C -0.367 4.367 23 H 0.082 0.918 24 C -0.207 4.207 25 N -0.567 5.567 26 Si 0.727 3.273 27 H -0.208 1.208 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.149 0.851 48 H 0.151 0.849 49 H 0.236 0.764 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.878 -2.866 -11.070 16.488 hybrid contribution 0.066 0.202 0.826 0.853 sum 11.944 -2.664 -10.244 15.959 Atomic orbital electron populations 1.22414 0.99257 1.00944 0.99848 1.20631 0.91900 0.95484 0.87674 0.94027 1.21810 0.79663 1.01973 0.97986 1.47561 1.06453 1.21191 1.59230 1.21807 0.96143 0.91045 0.97530 1.20315 0.90044 0.81517 0.76475 1.90688 1.64629 1.37488 1.46601 1.21204 0.92955 0.97729 1.00325 0.90151 1.21820 0.99984 0.98934 0.99255 1.21387 0.92775 0.94791 1.04200 1.20751 0.96951 0.91911 1.02428 1.19800 0.95929 0.95975 0.92670 1.21234 0.99813 0.96840 0.96239 1.21023 0.97634 0.92828 0.99141 1.21104 1.04750 1.01137 0.91237 1.17696 1.02310 0.87070 0.85311 1.91481 1.93037 1.66114 1.61624 1.21028 1.03559 0.91849 1.00750 1.42666 1.77592 1.11659 1.04607 1.19219 1.36237 0.93575 0.87677 0.91832 1.24684 1.02709 0.95846 0.97460 1.69758 1.50641 1.08214 1.28037 0.86303 0.77178 0.78829 0.85026 1.20849 1.22100 1.22105 0.92715 0.94682 0.93403 0.91408 0.90363 0.93570 0.91360 0.90901 0.92573 0.91843 0.90329 0.91736 0.89799 0.90074 0.90983 0.84985 0.85035 0.85083 0.84920 0.76438 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.49 37.16 0.35 -2.68 16 2 C 0.15 3.12 3.20 -67.93 -0.22 2.91 16 3 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 4 C 0.11 1.87 5.12 -4.05 -0.02 1.85 16 5 N -0.61 -10.11 2.77 -181.58 -0.50 -10.61 16 6 C 0.08 0.94 9.75 59.85 0.58 1.53 16 7 C 0.53 9.94 6.07 -10.98 -0.07 9.87 16 8 O -0.52 -12.14 13.63 5.56 0.08 -12.07 16 9 C -0.10 -1.49 1.89 -91.77 -0.17 -1.66 16 10 H 0.08 0.94 7.46 -51.93 -0.39 0.55 16 11 C -0.14 -2.18 8.34 37.16 0.31 -1.87 16 12 C -0.09 -1.37 3.98 -26.73 -0.11 -1.48 16 13 C -0.08 -0.93 5.10 -27.88 -0.14 -1.08 16 14 C -0.04 -0.52 5.13 -104.63 -0.54 -1.05 16 15 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 16 C -0.09 -0.93 10.04 -39.59 -0.40 -1.33 16 17 C -0.16 -1.78 10.03 -39.51 -0.40 -2.17 16 18 C 0.10 1.15 7.30 -39.42 -0.29 0.87 16 19 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 20 C -0.15 -1.80 9.68 -39.51 -0.38 -2.18 16 21 N -0.72 -18.43 4.52 -53.43 -0.24 -18.67 16 22 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 23 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.92 -27.92 13.06 55.49 0.72 -27.19 16 26 Si 0.89 22.44 29.55 -169.99 -5.02 17.41 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.08 1.49 7.37 -51.93 -0.38 1.10 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 37 H 0.07 0.84 4.77 -51.93 -0.25 0.59 16 38 H 0.06 0.67 6.99 -51.93 -0.36 0.30 16 39 H 0.06 1.00 6.04 -51.93 -0.31 0.68 16 40 H 0.08 1.54 8.12 -51.93 -0.42 1.12 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.52 8.08 -51.93 -0.42 1.10 16 43 H 0.08 0.86 6.70 -51.93 -0.35 0.51 16 44 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 45 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 48 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 49 H 0.40 11.17 5.20 -40.82 -0.21 10.96 16 50 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 404.47 15.07 6.10 6.10 Total: -1.00 -33.64 404.47 -9.07 -42.71 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -8.12 Total: 11.51 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.11 Total: -7.42 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.02 Total: -56.47 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.64 -9.07 -42.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717753979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.196 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds