Wall clock time and date at job start Tue Mar 31 2020 20:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47102 * 2 1 4 4 C 1.53000 * 109.47251 * 239.99793 * 2 1 3 5 5 N 1.46498 * 109.46930 * 184.99770 * 4 2 1 6 6 C 1.46502 * 120.00103 * 270.00043 * 5 4 2 7 7 C 1.34770 * 119.99993 * 90.00698 * 5 4 2 8 8 O 1.21280 * 120.00008 * 355.71021 * 7 5 4 9 9 C 1.50698 * 120.00459 * 175.71696 * 7 5 4 10 10 H 1.08997 * 109.47332 * 54.18504 * 9 7 5 11 11 C 1.53004 * 109.46985 * 294.19075 * 9 7 5 12 12 C 1.52990 * 109.47574 * 174.19138 * 9 7 5 13 13 C 1.53001 * 109.47487 * 184.99666 * 12 9 7 14 14 C 1.50700 * 109.47507 * 179.97438 * 13 12 9 15 15 C 1.38268 * 119.98766 * 269.73128 * 14 13 12 16 16 C 1.38228 * 120.04897 * 179.72769 * 15 14 13 17 17 C 1.38218 * 120.02583 * 0.54040 * 16 15 14 18 18 C 1.38436 * 119.97399 * 359.73007 * 17 16 15 19 19 F 1.35097 * 120.02505 * 180.02562 * 18 17 16 20 20 C 1.38183 * 119.98679 * 89.99997 * 14 13 12 21 21 N 1.46501 * 109.47111 * 119.99563 * 2 1 3 22 22 C 1.36932 * 120.00048 * 275.00045 * 21 2 1 23 23 H 1.07990 * 120.00584 * 0.02562 * 22 21 2 24 24 C 1.38820 * 119.99548 * 180.02562 * 22 21 2 25 25 N 1.31620 * 120.00390 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99515 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47543 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47187 * 120.00142 * 26 24 22 29 29 H 1.48506 * 109.46973 * 239.99488 * 26 24 22 30 30 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47287 * 300.00038 * 1 2 3 32 32 H 1.08999 * 109.47278 * 60.00009 * 1 2 3 33 33 H 1.08996 * 109.46867 * 305.00061 * 4 2 1 34 34 H 1.09003 * 109.46880 * 65.00228 * 4 2 1 35 35 H 1.08996 * 109.47335 * 84.09233 * 6 5 4 36 36 H 1.08997 * 109.47184 * 204.09929 * 6 5 4 37 37 H 1.08998 * 109.47045 * 324.08997 * 6 5 4 38 38 H 1.09004 * 109.46896 * 49.80971 * 11 9 7 39 39 H 1.08996 * 109.47533 * 169.80414 * 11 9 7 40 40 H 1.09005 * 109.46970 * 289.81078 * 11 9 7 41 41 H 1.08997 * 109.47364 * 304.99779 * 12 9 7 42 42 H 1.09003 * 109.47557 * 64.99673 * 12 9 7 43 43 H 1.09001 * 109.47546 * 300.00061 * 13 12 9 44 44 H 1.09008 * 109.47042 * 59.99826 * 13 12 9 45 45 H 1.07995 * 119.97453 * 359.97240 * 15 14 13 46 46 H 1.08004 * 119.98419 * 180.27280 * 16 15 14 47 47 H 1.08001 * 120.01308 * 179.74782 * 17 16 15 48 48 H 1.07997 * 120.00729 * 359.97438 * 20 14 13 49 49 H 0.97007 * 119.99711 * 95.00357 * 21 2 1 50 50 H 0.96999 * 120.00291 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.3343 0.2341 -1.7612 7 6 4.0757 -1.8986 -0.6116 8 8 3.3877 -2.7381 -0.0706 9 6 5.5744 -2.0544 -0.6362 10 1 6.0397 -1.1576 -0.2271 11 6 6.0423 -2.2590 -2.0785 12 6 5.9751 -3.2666 0.2068 13 6 7.5008 -3.3521 0.2844 14 6 7.8955 -4.5458 1.1152 15 6 8.0701 -4.4105 2.4801 16 6 8.4266 -5.5058 3.2442 17 6 8.6200 -6.7352 2.6429 18 6 8.4510 -6.8706 1.2756 19 9 8.6392 -8.0719 0.6868 20 6 8.0883 -5.7739 0.5118 21 7 2.0183 -0.6905 1.1962 22 6 2.1490 -0.0073 2.3757 23 1 1.8918 1.0404 2.4244 24 6 2.6123 -0.6616 3.5090 25 7 2.9253 -1.9387 3.4500 26 14 2.7900 0.2702 5.1182 27 1 2.3751 1.6824 4.9211 28 1 1.9298 -0.3592 6.1523 29 1 4.2070 0.2282 5.5607 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6053 -1.7198 -1.2951 34 1 1.7516 -0.1583 -2.1370 35 1 4.4530 1.0353 -1.0318 36 1 5.3128 -0.1718 -2.0176 37 1 3.8577 0.6278 -2.6590 38 1 5.6048 -1.4898 -2.7149 39 1 7.1293 -2.1908 -2.1210 40 1 5.7259 -3.2422 -2.4270 41 1 5.5656 -3.1620 1.2114 42 1 5.5833 -4.1741 -0.2525 43 1 7.9105 -3.4568 -0.7203 44 1 7.8927 -2.4445 0.7437 45 1 7.9238 -3.4493 2.9501 46 1 8.5584 -5.3999 4.3110 47 1 8.9025 -7.5900 3.2395 48 1 7.9557 -5.8783 -0.5549 49 1 2.2490 -1.6317 1.1527 50 1 3.2494 -2.3958 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717753980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:06 Heat of formation + Delta-G solvation = -50.222554 kcal Electronic energy + Delta-G solvation = -29877.422920 eV Core-core repulsion = 25819.278595 eV Total energy + Delta-G solvation = -4058.144325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.91068 -39.81360 -39.10581 -36.24644 -35.16222 -34.32123 -32.35394 -31.64771 -30.54050 -28.69980 -28.24000 -26.84634 -25.90017 -24.71253 -23.53491 -22.76303 -22.09428 -20.75422 -19.69450 -18.52724 -17.44298 -17.12780 -16.41009 -16.25657 -16.15909 -15.76711 -15.59627 -15.19645 -14.76513 -14.36924 -14.06521 -13.78220 -13.71409 -13.50429 -13.16914 -13.04120 -12.84237 -12.78613 -12.50768 -12.17171 -12.11161 -11.93956 -11.87551 -11.71394 -11.42792 -11.29958 -11.23512 -11.07668 -11.03279 -10.79203 -10.62490 -10.57466 -10.37853 -10.30170 -9.94577 -9.49602 -9.01875 -8.91850 -8.77570 -8.63052 -7.98047 -6.74345 -5.56384 -2.85606 1.16157 1.19850 3.31851 3.47337 3.51983 3.53761 3.55652 3.63065 4.20277 4.62897 4.69620 4.74438 4.83676 4.95731 5.12338 5.14311 5.23010 5.28145 5.33099 5.43015 5.44065 5.55637 5.57572 5.65581 5.69124 5.72163 5.81651 5.87642 5.91807 5.95171 5.98092 6.07654 6.07747 6.09017 6.13286 6.19578 6.30286 6.33726 6.41786 6.45804 6.59483 6.74197 6.75812 6.87852 6.90092 7.04590 7.22765 7.82115 7.97303 8.59701 8.91052 9.72802 10.37721 10.78184 11.63463 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009978 B = 0.003571 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.410072 B = 7838.543686 C = 9753.443500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.041 0.959 4 C 0.111 3.889 5 N -0.610 5.610 6 C 0.070 3.930 7 C 0.524 3.476 8 O -0.509 6.509 9 C -0.105 4.105 10 H 0.092 0.908 11 C -0.153 4.153 12 C -0.094 4.094 13 C -0.082 4.082 14 C -0.044 4.044 15 C -0.121 4.121 16 C -0.088 4.088 17 C -0.163 4.163 18 C 0.095 3.905 19 F -0.144 7.144 20 C -0.153 4.153 21 N -0.721 5.721 22 C -0.237 4.237 23 H 0.063 0.937 24 C -0.012 4.012 25 N -0.917 5.917 26 Si 0.895 3.105 27 H -0.283 1.283 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.400 0.600 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.257 -2.151 -11.659 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.059 0.941 4 C -0.012 4.012 5 N -0.344 5.344 6 C -0.073 4.073 7 C 0.311 3.689 8 O -0.383 6.383 9 C -0.126 4.126 10 H 0.110 0.890 11 C -0.210 4.210 12 C -0.132 4.132 13 C -0.119 4.119 14 C -0.044 4.044 15 C -0.140 4.140 16 C -0.106 4.106 17 C -0.182 4.182 18 C 0.076 3.924 19 F -0.123 7.123 20 C -0.171 4.171 21 N -0.368 5.368 22 C -0.369 4.369 23 H 0.081 0.919 24 C -0.208 4.208 25 N -0.565 5.565 26 Si 0.727 3.273 27 H -0.208 1.208 28 H -0.221 1.221 29 H -0.222 1.222 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.149 0.851 48 H 0.150 0.850 49 H 0.240 0.760 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.916 -2.575 -11.261 16.596 hybrid contribution 0.064 0.208 1.022 1.045 sum 11.980 -2.367 -10.238 15.936 Atomic orbital electron populations 1.22423 0.99369 1.00886 0.99809 1.20624 0.91860 0.95497 0.87752 0.94111 1.21806 0.79583 1.01781 0.98043 1.47541 1.06429 1.21060 1.59360 1.21983 0.95840 0.91365 0.98117 1.20289 0.89932 0.81193 0.77446 1.90687 1.64336 1.42264 1.41006 1.21214 0.93372 1.00836 0.97203 0.88980 1.22051 1.01443 1.02602 0.94874 1.21378 0.92749 0.96925 1.02132 1.20740 0.97082 0.95166 0.98957 1.19772 0.95965 0.94466 0.94170 1.21235 0.99674 0.99690 0.93351 1.21022 0.97581 0.91750 1.00208 1.21096 1.04777 0.99337 0.92980 1.17685 1.02442 0.80798 0.91516 1.91478 1.92960 1.43374 1.84486 1.21003 1.03663 0.91864 1.00619 1.42806 1.77531 1.11959 1.04492 1.19235 1.36270 0.93576 0.87786 0.91893 1.24707 1.02756 0.95882 0.97503 1.69765 1.50567 1.08204 1.27951 0.86294 0.77139 0.78817 0.85025 1.20846 1.22087 1.22165 0.93439 0.92744 0.94732 0.90591 0.91408 0.92847 0.90210 0.92067 0.91484 0.91741 0.92138 0.89500 0.91340 0.90815 0.90526 0.85036 0.85057 0.85105 0.84954 0.75964 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.49 37.15 0.35 -2.73 16 2 C 0.15 3.18 3.20 -67.93 -0.22 2.96 16 3 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 4 C 0.11 1.91 5.18 -4.04 -0.02 1.89 16 5 N -0.61 -10.05 2.77 -181.58 -0.50 -10.55 16 6 C 0.07 0.84 9.77 59.85 0.58 1.43 16 7 C 0.52 9.78 6.38 -10.99 -0.07 9.71 16 8 O -0.51 -11.99 13.08 5.56 0.07 -11.92 16 9 C -0.10 -1.49 1.89 -91.78 -0.17 -1.67 16 10 H 0.09 1.26 7.74 -51.93 -0.40 0.86 16 11 C -0.15 -1.57 8.16 37.16 0.30 -1.27 16 12 C -0.09 -1.42 3.96 -26.74 -0.11 -1.53 16 13 C -0.08 -0.95 5.11 -27.88 -0.14 -1.10 16 14 C -0.04 -0.55 5.13 -104.63 -0.54 -1.09 16 15 C -0.12 -1.54 9.70 -39.57 -0.38 -1.93 16 16 C -0.09 -1.02 10.04 -39.59 -0.40 -1.42 16 17 C -0.16 -1.92 10.03 -39.52 -0.40 -2.31 16 18 C 0.09 1.21 7.30 -39.42 -0.29 0.93 16 19 F -0.14 -1.90 17.27 2.25 0.04 -1.86 16 20 C -0.15 -1.90 9.68 -39.51 -0.38 -2.28 16 21 N -0.72 -18.95 4.52 -53.43 -0.24 -19.19 16 22 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 23 H 0.06 1.77 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.92 -28.54 13.06 55.49 0.72 -27.82 16 26 Si 0.90 22.85 29.55 -169.99 -5.02 17.82 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 29 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.43 7.48 -51.93 -0.39 1.04 16 34 H 0.07 0.91 7.95 -51.93 -0.41 0.50 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.78 4.10 -51.93 -0.21 0.56 16 37 H 0.06 0.58 7.98 -51.93 -0.41 0.17 16 38 H 0.07 0.62 5.40 -51.93 -0.28 0.34 16 39 H 0.06 0.52 7.09 -51.93 -0.37 0.16 16 40 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 41 H 0.09 1.70 8.04 -51.93 -0.42 1.28 16 42 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 43 H 0.07 0.70 6.75 -51.93 -0.35 0.35 16 44 H 0.08 0.83 8.08 -51.92 -0.42 0.41 16 45 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 47 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 48 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 49 H 0.40 11.44 4.84 -40.82 -0.20 11.24 16 50 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -34.87 402.70 -9.04 -43.91 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.05 Total: 11.32 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.12 Total: -7.78 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.02 Total: -57.56 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.07 Total: -11.92 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.87 -9.04 -43.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717753980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.315 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds