Wall clock time and date at job start Tue Mar 31 2020 20:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47102 * 2 1 4 4 C 1.53000 * 109.47251 * 239.99793 * 2 1 3 5 5 N 1.46498 * 109.46930 * 184.99770 * 4 2 1 6 6 C 1.46502 * 120.00103 * 270.00043 * 5 4 2 7 7 C 1.34770 * 119.99993 * 90.00698 * 5 4 2 8 8 O 1.21280 * 120.00008 * 355.71021 * 7 5 4 9 9 C 1.50698 * 120.00459 * 175.71696 * 7 5 4 10 10 H 1.08997 * 109.47332 * 54.18504 * 9 7 5 11 11 C 1.53004 * 109.46985 * 294.19075 * 9 7 5 12 12 C 1.52990 * 109.47574 * 174.19138 * 9 7 5 13 13 C 1.53001 * 109.47487 * 184.99666 * 12 9 7 14 14 C 1.50700 * 109.47507 * 179.97438 * 13 12 9 15 15 C 1.38268 * 119.98766 * 269.73128 * 14 13 12 16 16 C 1.38228 * 120.04897 * 179.72769 * 15 14 13 17 17 C 1.38218 * 120.02583 * 0.54040 * 16 15 14 18 18 C 1.38436 * 119.97399 * 359.73007 * 17 16 15 19 19 F 1.35097 * 120.02505 * 180.02562 * 18 17 16 20 20 C 1.38183 * 119.98679 * 89.99997 * 14 13 12 21 21 N 1.46501 * 109.47111 * 119.99563 * 2 1 3 22 22 C 1.36932 * 120.00048 * 275.00045 * 21 2 1 23 23 H 1.07990 * 120.00584 * 0.02562 * 22 21 2 24 24 C 1.38820 * 119.99548 * 180.02562 * 22 21 2 25 25 N 1.31620 * 120.00390 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99515 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47543 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47187 * 120.00142 * 26 24 22 29 29 H 1.48506 * 109.46973 * 239.99488 * 26 24 22 30 30 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47287 * 300.00038 * 1 2 3 32 32 H 1.08999 * 109.47278 * 60.00009 * 1 2 3 33 33 H 1.08996 * 109.46867 * 305.00061 * 4 2 1 34 34 H 1.09003 * 109.46880 * 65.00228 * 4 2 1 35 35 H 1.08996 * 109.47335 * 84.09233 * 6 5 4 36 36 H 1.08997 * 109.47184 * 204.09929 * 6 5 4 37 37 H 1.08998 * 109.47045 * 324.08997 * 6 5 4 38 38 H 1.09004 * 109.46896 * 49.80971 * 11 9 7 39 39 H 1.08996 * 109.47533 * 169.80414 * 11 9 7 40 40 H 1.09005 * 109.46970 * 289.81078 * 11 9 7 41 41 H 1.08997 * 109.47364 * 304.99779 * 12 9 7 42 42 H 1.09003 * 109.47557 * 64.99673 * 12 9 7 43 43 H 1.09001 * 109.47546 * 300.00061 * 13 12 9 44 44 H 1.09008 * 109.47042 * 59.99826 * 13 12 9 45 45 H 1.07995 * 119.97453 * 359.97240 * 15 14 13 46 46 H 1.08004 * 119.98419 * 180.27280 * 16 15 14 47 47 H 1.08001 * 120.01308 * 179.74782 * 17 16 15 48 48 H 1.07997 * 120.00729 * 359.97438 * 20 14 13 49 49 H 0.97007 * 119.99711 * 95.00357 * 21 2 1 50 50 H 0.96999 * 120.00291 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.3343 0.2341 -1.7612 7 6 4.0757 -1.8986 -0.6116 8 8 3.3877 -2.7381 -0.0706 9 6 5.5744 -2.0544 -0.6362 10 1 6.0397 -1.1576 -0.2271 11 6 6.0423 -2.2590 -2.0785 12 6 5.9751 -3.2666 0.2068 13 6 7.5008 -3.3521 0.2844 14 6 7.8955 -4.5458 1.1152 15 6 8.0701 -4.4105 2.4801 16 6 8.4266 -5.5058 3.2442 17 6 8.6200 -6.7352 2.6429 18 6 8.4510 -6.8706 1.2756 19 9 8.6392 -8.0719 0.6868 20 6 8.0883 -5.7739 0.5118 21 7 2.0183 -0.6905 1.1962 22 6 2.1490 -0.0073 2.3757 23 1 1.8918 1.0404 2.4244 24 6 2.6123 -0.6616 3.5090 25 7 2.9253 -1.9387 3.4500 26 14 2.7900 0.2702 5.1182 27 1 2.3751 1.6824 4.9211 28 1 1.9298 -0.3592 6.1523 29 1 4.2070 0.2282 5.5607 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6053 -1.7198 -1.2951 34 1 1.7516 -0.1583 -2.1370 35 1 4.4530 1.0353 -1.0318 36 1 5.3128 -0.1718 -2.0176 37 1 3.8577 0.6278 -2.6590 38 1 5.6048 -1.4898 -2.7149 39 1 7.1293 -2.1908 -2.1210 40 1 5.7259 -3.2422 -2.4270 41 1 5.5656 -3.1620 1.2114 42 1 5.5833 -4.1741 -0.2525 43 1 7.9105 -3.4568 -0.7203 44 1 7.8927 -2.4445 0.7437 45 1 7.9238 -3.4493 2.9501 46 1 8.5584 -5.3999 4.3110 47 1 8.9025 -7.5900 3.2395 48 1 7.9557 -5.8783 -0.5549 49 1 2.2490 -1.6317 1.1527 50 1 3.2494 -2.3958 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717753980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:05 Heat of formation + Delta-G solvation = -70.423001 kcal Electronic energy + Delta-G solvation = -29878.298878 eV Core-core repulsion = 25819.278595 eV Total energy + Delta-G solvation = -4059.020283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.91234 -41.12846 -40.10845 -37.74835 -36.45697 -35.89070 -33.96764 -33.02997 -31.49632 -30.55651 -29.37844 -28.00345 -27.12179 -25.85192 -25.58090 -23.73094 -23.24212 -21.91362 -21.22089 -19.84734 -19.24100 -18.33333 -17.62957 -17.38010 -17.15493 -17.06142 -16.78130 -16.60422 -16.26191 -15.82695 -15.54456 -15.08744 -14.83917 -14.71178 -14.55508 -14.24598 -13.98953 -13.90560 -13.78465 -13.57454 -13.43111 -13.25099 -13.02940 -12.99023 -12.82614 -12.74575 -12.60434 -12.43385 -12.35791 -12.19964 -12.10692 -11.97037 -11.80643 -11.68634 -11.52879 -11.50573 -10.93485 -10.39858 -9.90004 -9.62107 -9.36527 -8.85786 -7.80445 -5.09789 0.18006 0.25292 1.42787 1.44732 1.53989 1.93823 2.32011 2.58856 2.62050 3.24272 3.47405 3.66182 3.70059 3.82018 3.99034 4.03406 4.07841 4.16772 4.23268 4.28656 4.34205 4.41220 4.45611 4.54220 4.55040 4.61204 4.69636 4.72583 4.75465 4.79233 4.91288 4.94828 4.97265 5.00255 5.08957 5.09621 5.12158 5.12697 5.17443 5.28604 5.36029 5.42856 5.47490 5.50634 5.56217 5.62298 5.85862 5.95480 6.37167 6.67496 7.42811 7.55766 8.32593 8.58033 9.40195 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009978 B = 0.003571 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.410072 B = 7838.543686 C = 9753.443500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.044 0.956 4 C 0.116 3.884 5 N -0.611 5.611 6 C 0.063 3.937 7 C 0.508 3.492 8 O -0.571 6.571 9 C -0.099 4.099 10 H 0.100 0.900 11 C -0.144 4.144 12 C -0.083 4.083 13 C -0.071 4.071 14 C -0.056 4.056 15 C -0.139 4.139 16 C -0.092 4.092 17 C -0.165 4.165 18 C 0.078 3.922 19 F -0.148 7.148 20 C -0.157 4.157 21 N -0.738 5.738 22 C -0.235 4.235 23 H 0.067 0.933 24 C -0.075 4.075 25 N -0.956 5.956 26 Si 0.962 3.038 27 H -0.267 1.267 28 H -0.300 1.300 29 H -0.293 1.293 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.042 0.958 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.029 0.971 42 H 0.052 0.948 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.152 0.848 47 H 0.151 0.849 48 H 0.148 0.852 49 H 0.388 0.612 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.535 -0.220 -13.730 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.062 0.938 4 C -0.008 4.008 5 N -0.343 5.343 6 C -0.078 4.078 7 C 0.297 3.703 8 O -0.450 6.450 9 C -0.120 4.120 10 H 0.118 0.882 11 C -0.200 4.200 12 C -0.121 4.121 13 C -0.108 4.108 14 C -0.057 4.057 15 C -0.157 4.157 16 C -0.110 4.110 17 C -0.183 4.183 18 C 0.059 3.941 19 F -0.127 7.127 20 C -0.176 4.176 21 N -0.384 5.384 22 C -0.368 4.368 23 H 0.085 0.915 24 C -0.268 4.268 25 N -0.606 5.606 26 Si 0.792 3.208 27 H -0.192 1.192 28 H -0.227 1.227 29 H -0.220 1.220 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.135 0.865 35 H 0.061 0.939 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.104 0.896 45 H 0.147 0.853 46 H 0.170 0.830 47 H 0.169 0.831 48 H 0.165 0.835 49 H 0.225 0.775 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.189 -0.561 -13.393 18.805 hybrid contribution -0.416 -0.350 1.613 1.702 sum 12.773 -0.911 -11.780 17.400 Atomic orbital electron populations 1.22266 0.97845 1.00344 1.01031 1.20960 0.92885 0.95436 0.87300 0.93795 1.21754 0.80255 1.00745 0.98068 1.47718 1.06609 1.21419 1.58535 1.22293 0.96840 0.89844 0.98826 1.21196 0.91673 0.80967 0.76424 1.90655 1.65975 1.44620 1.43712 1.21243 0.90388 1.00420 0.99972 0.88217 1.22036 1.03490 1.02912 0.91600 1.21187 0.95149 0.96949 0.98845 1.20685 0.94111 0.95246 1.00720 1.19936 0.96306 0.95042 0.94367 1.21443 1.00200 1.00182 0.93895 1.21298 0.97007 0.91406 1.01285 1.21369 1.04046 1.00035 0.92882 1.17920 1.03177 0.80850 0.92166 1.91464 1.93074 1.43557 1.84599 1.21201 1.03274 0.91629 1.01507 1.43074 1.77913 1.11680 1.05698 1.19599 1.34583 0.93749 0.88864 0.91489 1.25486 1.03628 0.96740 1.00930 1.69975 1.52368 1.09967 1.28311 0.85233 0.76735 0.78165 0.80628 1.19186 1.22731 1.22041 0.94862 0.94783 0.90139 0.92937 0.86465 0.93889 0.87743 0.88647 0.89824 0.88503 0.92646 0.95249 0.92871 0.87644 0.89638 0.85256 0.83005 0.83092 0.83453 0.77474 0.94830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 9.49 71.98 0.68 -4.97 16 2 C 0.14 5.84 3.20 44.99 0.14 5.98 16 3 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 4 C 0.12 3.81 5.18 86.38 0.45 4.26 16 5 N -0.61 -19.35 2.77 -846.78 -2.35 -21.70 16 6 C 0.06 1.31 9.77 127.77 1.25 2.55 16 7 C 0.51 19.31 6.38 87.66 0.56 19.87 16 8 O -0.57 -28.59 13.08 -3.03 -0.04 -28.63 16 9 C -0.10 -2.77 1.89 -11.54 -0.02 -2.79 16 10 H 0.10 2.62 7.74 -2.39 -0.02 2.60 16 11 C -0.14 -2.52 8.16 71.98 0.59 -1.93 16 12 C -0.08 -2.63 3.96 30.59 0.12 -2.51 16 13 C -0.07 -1.59 5.11 29.85 0.15 -1.43 16 14 C -0.06 -1.43 5.13 -19.87 -0.10 -1.53 16 15 C -0.14 -3.62 9.70 22.27 0.22 -3.41 16 16 C -0.09 -2.14 10.04 22.26 0.22 -1.91 16 17 C -0.16 -3.80 10.03 22.31 0.22 -3.57 16 18 C 0.08 1.98 7.30 22.37 0.16 2.14 16 19 F -0.15 -3.85 17.27 44.97 0.78 -3.07 16 20 C -0.16 -3.86 9.68 22.31 0.22 -3.64 16 21 N -0.74 -39.79 4.52 -322.95 -1.46 -41.25 16 22 C -0.24 -13.74 9.93 84.04 0.83 -12.90 16 23 H 0.07 3.76 7.83 -2.92 -0.02 3.74 16 24 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 25 N -0.96 -62.28 13.06 21.65 0.28 -62.00 16 26 Si 0.96 48.11 29.55 68.60 2.03 50.13 16 27 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 29 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 1.99 7.48 -2.39 -0.02 1.97 16 34 H 0.12 2.68 7.95 -2.39 -0.02 2.66 16 35 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 1.62 4.10 -2.39 -0.01 1.61 16 37 H 0.09 1.34 7.98 -2.39 -0.02 1.33 16 38 H 0.08 1.21 5.40 -2.38 -0.01 1.19 16 39 H 0.10 1.12 7.09 -2.39 -0.02 1.10 16 40 H 0.05 1.06 8.09 -2.38 -0.02 1.04 16 41 H 0.03 1.24 8.04 -2.39 -0.02 1.22 16 42 H 0.05 1.79 8.11 -2.39 -0.02 1.77 16 43 H 0.11 1.70 6.75 -2.39 -0.02 1.68 16 44 H 0.09 1.77 8.08 -2.38 -0.02 1.75 16 45 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 46 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 47 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 48 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 49 H 0.39 23.20 4.84 -92.70 -0.45 22.76 16 50 H 0.24 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -81.92 402.70 5.88 -76.04 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: 0.48 Total: 40.35 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 6.16 Total: -9.87 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -3.53 Total: -124.95 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.04 Total: -28.63 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.07 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.13 kcal Total: -81.92 5.88 -76.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717753980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.618 kcal (2) G-P(sol) polarization free energy of solvation -81.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds