Wall clock time and date at job start Tue Mar 31 2020 20:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47371 * 2 1 4 4 C 1.53004 * 109.46769 * 240.00016 * 2 1 3 5 5 C 1.53004 * 109.46817 * 65.00136 * 4 2 1 6 6 C 1.50702 * 109.47111 * 179.97438 * 5 4 2 7 7 C 1.38268 * 119.98283 * 269.72770 * 6 5 4 8 8 C 1.38233 * 120.04596 * 179.72585 * 7 6 5 9 9 C 1.38219 * 120.02455 * 0.54430 * 8 7 6 10 10 C 1.38439 * 119.97618 * 359.73023 * 9 8 7 11 11 F 1.35095 * 120.02518 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98871 * 89.99619 * 6 5 4 13 13 C 1.50705 * 109.47234 * 120.00641 * 2 1 3 14 14 O 1.21277 * 119.99993 * 119.99784 * 13 2 1 15 15 N 1.34776 * 119.99704 * 299.99476 * 13 2 1 16 16 C 1.46503 * 119.99767 * 180.02562 * 15 13 2 17 17 C 1.53004 * 109.46795 * 179.97438 * 16 15 13 18 18 H 1.08995 * 109.47072 * 295.00115 * 17 16 15 19 19 C 1.52996 * 109.46579 * 174.99997 * 17 16 15 20 20 N 1.46504 * 109.46722 * 55.00263 * 17 16 15 21 21 C 1.46499 * 120.00133 * 60.00112 * 20 17 16 22 22 C 1.36938 * 119.99499 * 239.99475 * 20 17 16 23 23 H 1.07993 * 120.00242 * 340.01933 * 22 20 17 24 24 C 1.38817 * 119.99627 * 160.02783 * 22 20 17 25 25 N 1.31614 * 119.99715 * 344.40173 * 24 22 20 26 26 Si 1.86798 * 119.99935 * 164.13396 * 24 22 20 27 27 H 1.48501 * 109.47236 * 84.88199 * 26 24 22 28 28 H 1.48503 * 109.47035 * 204.88378 * 26 24 22 29 29 H 1.48497 * 109.46936 * 324.88148 * 26 24 22 30 30 H 1.09002 * 109.46530 * 299.99598 * 1 2 3 31 31 H 1.08999 * 109.47241 * 59.99512 * 1 2 3 32 32 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47149 * 184.99852 * 4 2 1 34 34 H 1.08996 * 109.47519 * 305.00351 * 4 2 1 35 35 H 1.09003 * 109.47171 * 300.00029 * 5 4 2 36 36 H 1.09004 * 109.47373 * 60.00243 * 5 4 2 37 37 H 1.07997 * 119.97932 * 359.97438 * 7 6 5 38 38 H 1.07999 * 119.98481 * 180.26881 * 8 7 6 39 39 H 1.08004 * 120.00929 * 179.74633 * 9 8 7 40 40 H 1.08001 * 120.01248 * 359.97438 * 12 6 5 41 41 H 0.96998 * 120.00166 * 0.02562 * 15 13 2 42 42 H 1.09001 * 109.47018 * 60.00292 * 16 15 13 43 43 H 1.08997 * 109.46876 * 300.00147 * 16 15 13 44 44 H 1.09007 * 109.46613 * 180.02562 * 19 17 16 45 45 H 1.09004 * 109.47535 * 299.99711 * 19 17 16 46 46 H 1.08995 * 109.47517 * 60.00654 * 19 17 16 47 47 H 1.09004 * 109.46991 * 265.44003 * 21 20 17 48 48 H 1.08996 * 109.47370 * 25.43565 * 21 20 17 49 49 H 1.08998 * 109.47073 * 145.43837 * 21 20 17 50 50 H 0.97003 * 119.99940 * 179.72784 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6351 0.0690 -2.4953 6 6 2.1379 -0.6410 -3.7259 7 6 3.3893 -0.3430 -4.2328 8 6 3.8541 -0.9976 -5.3581 9 6 3.0636 -1.9428 -5.9844 10 6 1.8082 -2.2379 -5.4810 11 9 1.0349 -3.1619 -6.0920 12 6 1.3459 -1.5856 -4.3502 13 6 2.0324 -0.7106 1.2304 14 8 2.7296 -1.6966 1.1190 15 7 1.7069 -0.2501 2.4545 16 6 2.1957 -0.9405 3.6507 17 6 1.6862 -0.2190 4.9000 18 1 2.1208 0.7795 4.9454 19 6 2.0915 -1.0090 6.1459 20 7 0.2261 -0.1139 4.8418 21 6 -0.5935 -1.3264 4.7743 22 6 -0.3726 1.1176 4.8505 23 1 0.1676 1.9781 5.2167 24 6 -1.6740 1.2600 4.3888 25 7 -2.2247 0.3060 3.6686 26 14 -2.6460 2.8023 4.7962 27 1 -2.3277 3.8636 3.8074 28 1 -4.0989 2.4992 4.7467 29 1 -2.2841 3.2701 6.1582 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1262 -0.7995 -1.2057 34 1 1.6053 -1.7198 -1.2953 35 1 0.5488 0.1473 -2.5389 36 1 2.0698 1.0676 -2.4495 37 1 4.0057 0.3988 -3.7469 38 1 4.8334 -0.7671 -5.7507 39 1 3.4253 -2.4511 -6.8660 40 1 0.3669 -1.8154 -3.9563 41 1 1.1490 0.5383 2.5436 42 1 3.2857 -0.9401 3.6504 43 1 1.8327 -1.9683 3.6507 44 1 1.7281 -0.4951 7.0360 45 1 1.6568 -2.0075 6.1005 46 1 3.1777 -1.0871 6.1893 47 1 -0.8216 -1.5533 3.7328 48 1 -0.0470 -2.1594 5.2163 49 1 -1.5217 -1.1685 5.3235 50 1 -3.1354 0.4038 3.3493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725192713.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:14 Heat of formation + Delta-G solvation = -58.590364 kcal Electronic energy + Delta-G solvation = -29080.842948 eV Core-core repulsion = 25022.335767 eV Total energy + Delta-G solvation = -4058.507181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.05865 -39.68571 -39.14355 -36.82972 -35.40661 -33.65641 -32.49368 -31.77911 -30.74051 -29.34142 -28.31656 -26.06491 -25.84962 -24.97880 -23.15902 -22.94113 -22.25194 -20.88389 -19.49809 -18.97468 -17.54042 -16.94591 -16.58641 -16.44509 -16.30581 -15.77221 -15.57281 -15.28612 -14.99450 -14.36871 -14.24492 -13.86588 -13.81378 -13.58805 -13.29319 -12.92450 -12.84507 -12.66833 -12.49766 -12.36543 -12.13711 -11.98979 -11.92633 -11.62906 -11.51173 -11.28485 -11.22386 -11.12219 -10.80494 -10.74921 -10.62250 -10.54016 -10.44813 -10.32430 -9.88028 -9.81384 -9.23997 -9.10720 -8.83830 -8.61433 -8.31694 -6.87188 -5.79697 -3.23823 0.95217 0.99752 3.20934 3.31237 3.35833 3.40224 3.41547 3.85804 4.04058 4.41998 4.45934 4.54995 4.80120 4.96202 5.04003 5.06544 5.15088 5.19132 5.33058 5.37164 5.41488 5.51572 5.59103 5.60568 5.72858 5.75449 5.85962 5.90251 5.95376 6.03118 6.08090 6.10367 6.11445 6.16247 6.19122 6.36116 6.37790 6.39063 6.44372 6.65918 6.68472 6.70849 6.78933 6.89064 7.18521 7.36760 7.68302 7.75420 8.26720 8.30099 8.86938 9.15692 9.79791 10.28775 11.23385 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.002435 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.713426 B =11497.981188 C =12457.508107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.092 0.908 4 C -0.090 4.090 5 C -0.087 4.087 6 C -0.044 4.044 7 C -0.128 4.128 8 C -0.090 4.090 9 C -0.164 4.164 10 C 0.099 3.901 11 F -0.142 7.142 12 C -0.151 4.151 13 C 0.513 3.487 14 O -0.565 6.565 15 N -0.699 5.699 16 C 0.107 3.893 17 C 0.158 3.842 18 H 0.067 0.933 19 C -0.158 4.158 20 N -0.593 5.593 21 C 0.164 3.836 22 C -0.260 4.260 23 H 0.067 0.933 24 C 0.006 3.994 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.414 0.586 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.029 0.971 48 H -0.002 1.002 49 H 0.042 0.958 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 -0.307 -14.131 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.110 0.890 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.044 4.044 7 C -0.146 4.146 8 C -0.108 4.108 9 C -0.183 4.183 10 C 0.079 3.921 11 F -0.121 7.121 12 C -0.170 4.170 13 C 0.299 3.701 14 O -0.445 6.445 15 N -0.350 5.350 16 C -0.019 4.019 17 C 0.049 3.951 18 H 0.086 0.914 19 C -0.218 4.218 20 N -0.316 5.316 21 C 0.019 3.981 22 C -0.390 4.390 23 H 0.085 0.915 24 C -0.193 4.193 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.251 0.749 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.047 0.953 48 H 0.017 0.983 49 H 0.060 0.940 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.931 -1.048 -14.262 17.410 hybrid contribution -1.127 0.897 0.122 1.446 sum 8.804 -0.151 -14.139 16.657 Atomic orbital electron populations 1.21817 0.92172 1.02992 1.03256 1.21273 0.98205 1.00366 0.93091 0.89029 1.21338 1.01725 0.98953 0.90818 1.20793 1.01923 0.98621 0.91037 1.19816 0.93690 0.95066 0.95827 1.21169 0.95792 1.00934 0.96737 1.20998 0.99430 0.95086 0.95260 1.21115 0.93646 1.01209 1.02309 1.17722 0.90156 0.90425 0.93751 1.91496 1.74580 1.63703 1.82273 1.21101 1.01855 0.98380 0.95673 1.20505 0.80074 0.84566 0.84995 1.90626 1.39615 1.27058 1.87241 1.45865 1.52105 1.32261 1.04759 1.21910 0.97001 0.96892 0.86102 1.20634 0.86109 0.97271 0.91047 0.91440 1.22175 0.99357 1.00948 0.99311 1.43953 0.98515 1.03356 1.85825 1.20740 0.92978 0.85167 0.99200 1.19180 0.97203 0.86527 1.36049 0.91494 1.24901 0.98637 0.97506 0.98282 1.70097 1.14440 1.33280 1.36488 0.86387 0.79531 0.82928 0.78275 1.21446 1.21721 1.20841 0.90319 0.92147 0.92330 0.91106 0.91168 0.90097 0.90417 0.85262 0.85108 0.85026 0.84638 0.74880 0.93086 0.92579 0.92456 0.92985 0.93600 0.95312 0.98321 0.93975 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.84 37.16 0.33 -1.78 16 2 C -0.11 -1.52 2.73 -91.77 -0.25 -1.77 16 3 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.09 -1.15 4.01 -26.73 -0.11 -1.25 16 5 C -0.09 -0.86 5.10 -27.88 -0.14 -1.00 16 6 C -0.04 -0.45 5.13 -104.63 -0.54 -0.99 16 7 C -0.13 -1.17 9.70 -39.57 -0.38 -1.55 16 8 C -0.09 -0.75 10.04 -39.59 -0.40 -1.15 16 9 C -0.16 -1.53 10.03 -39.51 -0.40 -1.92 16 10 C 0.10 1.09 7.30 -39.42 -0.29 0.80 16 11 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 12 C -0.15 -1.65 9.68 -39.52 -0.38 -2.03 16 13 C 0.51 9.21 7.15 -10.98 -0.08 9.14 16 14 O -0.57 -11.78 15.92 5.56 0.09 -11.69 16 15 N -0.70 -12.92 5.28 -60.29 -0.32 -13.23 16 16 C 0.11 1.97 4.97 -4.04 -0.02 1.95 16 17 C 0.16 2.96 2.87 -67.93 -0.19 2.76 16 18 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 19 C -0.16 -2.59 9.18 37.16 0.34 -2.25 16 20 N -0.59 -13.33 2.29 -173.49 -0.40 -13.73 16 21 C 0.16 3.81 8.11 59.85 0.49 4.30 16 22 C -0.26 -6.40 9.34 -15.06 -0.14 -6.54 16 23 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 24 C 0.01 0.14 5.05 -17.43 -0.09 0.06 16 25 N -0.90 -23.70 10.68 55.49 0.59 -23.11 16 26 Si 0.90 20.36 29.58 -169.99 -5.03 15.33 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 H 0.08 1.37 7.56 -51.93 -0.39 0.97 16 31 H 0.06 0.73 6.56 -51.93 -0.34 0.39 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.95 7.95 -51.93 -0.41 0.53 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.77 6.51 -51.93 -0.34 0.44 16 36 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.41 8.00 7.31 -40.82 -0.30 7.70 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.12 7.84 -51.93 -0.41 0.72 16 44 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 45 H 0.05 0.87 6.66 -51.93 -0.35 0.52 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.03 0.73 7.44 -51.93 -0.39 0.34 16 48 H 0.00 -0.04 6.43 -51.93 -0.33 -0.37 16 49 H 0.04 1.07 7.17 -51.93 -0.37 0.70 16 50 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 406.17 15.07 6.12 6.12 Total: -1.00 -28.42 406.17 -9.38 -37.81 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.23 Total: 7.38 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.25 Total: -3.23 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.12 Total: -50.07 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.42 -9.38 -37.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725192713.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.785 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds