Wall clock time and date at job start Tue Mar 31 2020 20:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47371 * 2 1 4 4 C 1.53004 * 109.46769 * 240.00016 * 2 1 3 5 5 C 1.53004 * 109.46817 * 65.00136 * 4 2 1 6 6 C 1.50702 * 109.47111 * 179.97438 * 5 4 2 7 7 C 1.38268 * 119.98283 * 269.72770 * 6 5 4 8 8 C 1.38233 * 120.04596 * 179.72585 * 7 6 5 9 9 C 1.38219 * 120.02455 * 0.54430 * 8 7 6 10 10 C 1.38439 * 119.97618 * 359.73023 * 9 8 7 11 11 F 1.35095 * 120.02518 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98871 * 89.99619 * 6 5 4 13 13 C 1.50705 * 109.47234 * 120.00641 * 2 1 3 14 14 O 1.21277 * 119.99993 * 119.99784 * 13 2 1 15 15 N 1.34776 * 119.99704 * 299.99476 * 13 2 1 16 16 C 1.46503 * 119.99767 * 180.02562 * 15 13 2 17 17 C 1.53004 * 109.46795 * 179.97438 * 16 15 13 18 18 H 1.08995 * 109.47072 * 295.00115 * 17 16 15 19 19 C 1.52996 * 109.46579 * 174.99997 * 17 16 15 20 20 N 1.46504 * 109.46722 * 55.00263 * 17 16 15 21 21 C 1.46499 * 120.00133 * 60.00112 * 20 17 16 22 22 C 1.36938 * 119.99499 * 239.99475 * 20 17 16 23 23 H 1.07993 * 120.00242 * 340.01933 * 22 20 17 24 24 C 1.38817 * 119.99627 * 160.02783 * 22 20 17 25 25 N 1.31614 * 119.99715 * 344.40173 * 24 22 20 26 26 Si 1.86798 * 119.99935 * 164.13396 * 24 22 20 27 27 H 1.48501 * 109.47236 * 84.88199 * 26 24 22 28 28 H 1.48503 * 109.47035 * 204.88378 * 26 24 22 29 29 H 1.48497 * 109.46936 * 324.88148 * 26 24 22 30 30 H 1.09002 * 109.46530 * 299.99598 * 1 2 3 31 31 H 1.08999 * 109.47241 * 59.99512 * 1 2 3 32 32 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47149 * 184.99852 * 4 2 1 34 34 H 1.08996 * 109.47519 * 305.00351 * 4 2 1 35 35 H 1.09003 * 109.47171 * 300.00029 * 5 4 2 36 36 H 1.09004 * 109.47373 * 60.00243 * 5 4 2 37 37 H 1.07997 * 119.97932 * 359.97438 * 7 6 5 38 38 H 1.07999 * 119.98481 * 180.26881 * 8 7 6 39 39 H 1.08004 * 120.00929 * 179.74633 * 9 8 7 40 40 H 1.08001 * 120.01248 * 359.97438 * 12 6 5 41 41 H 0.96998 * 120.00166 * 0.02562 * 15 13 2 42 42 H 1.09001 * 109.47018 * 60.00292 * 16 15 13 43 43 H 1.08997 * 109.46876 * 300.00147 * 16 15 13 44 44 H 1.09007 * 109.46613 * 180.02562 * 19 17 16 45 45 H 1.09004 * 109.47535 * 299.99711 * 19 17 16 46 46 H 1.08995 * 109.47517 * 60.00654 * 19 17 16 47 47 H 1.09004 * 109.46991 * 265.44003 * 21 20 17 48 48 H 1.08996 * 109.47370 * 25.43565 * 21 20 17 49 49 H 1.08998 * 109.47073 * 145.43837 * 21 20 17 50 50 H 0.97003 * 119.99940 * 179.72784 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6351 0.0690 -2.4953 6 6 2.1379 -0.6410 -3.7259 7 6 3.3893 -0.3430 -4.2328 8 6 3.8541 -0.9976 -5.3581 9 6 3.0636 -1.9428 -5.9844 10 6 1.8082 -2.2379 -5.4810 11 9 1.0349 -3.1619 -6.0920 12 6 1.3459 -1.5856 -4.3502 13 6 2.0324 -0.7106 1.2304 14 8 2.7296 -1.6966 1.1190 15 7 1.7069 -0.2501 2.4545 16 6 2.1957 -0.9405 3.6507 17 6 1.6862 -0.2190 4.9000 18 1 2.1208 0.7795 4.9454 19 6 2.0915 -1.0090 6.1459 20 7 0.2261 -0.1139 4.8418 21 6 -0.5935 -1.3264 4.7743 22 6 -0.3726 1.1176 4.8505 23 1 0.1676 1.9781 5.2167 24 6 -1.6740 1.2600 4.3888 25 7 -2.2247 0.3060 3.6686 26 14 -2.6460 2.8023 4.7962 27 1 -2.3277 3.8636 3.8074 28 1 -4.0989 2.4992 4.7467 29 1 -2.2841 3.2701 6.1582 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1262 -0.7995 -1.2057 34 1 1.6053 -1.7198 -1.2953 35 1 0.5488 0.1473 -2.5389 36 1 2.0698 1.0676 -2.4495 37 1 4.0057 0.3988 -3.7469 38 1 4.8334 -0.7671 -5.7507 39 1 3.4253 -2.4511 -6.8660 40 1 0.3669 -1.8154 -3.9563 41 1 1.1490 0.5383 2.5436 42 1 3.2857 -0.9401 3.6504 43 1 1.8327 -1.9683 3.6507 44 1 1.7281 -0.4951 7.0360 45 1 1.6568 -2.0075 6.1005 46 1 3.1777 -1.0871 6.1893 47 1 -0.8216 -1.5533 3.7328 48 1 -0.0470 -2.1594 5.2163 49 1 -1.5217 -1.1685 5.3235 50 1 -3.1354 0.4038 3.3493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725192713.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:13 Heat of formation + Delta-G solvation = -71.861115 kcal Electronic energy + Delta-G solvation = -29081.418411 eV Core-core repulsion = 25022.335767 eV Total energy + Delta-G solvation = -4059.082644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.91056 -40.93720 -40.07181 -38.44471 -36.52417 -35.31996 -33.85846 -33.02233 -31.47994 -31.04991 -29.27370 -27.97623 -27.24281 -26.04837 -24.89309 -23.71513 -23.30826 -21.82837 -21.06102 -20.37775 -18.79781 -18.43369 -17.66931 -17.37935 -17.13738 -17.07267 -16.90865 -16.60656 -16.32767 -15.87896 -15.41697 -15.17076 -14.80129 -14.69926 -14.55023 -14.35547 -14.18303 -13.91358 -13.67410 -13.61146 -13.49619 -13.29487 -13.11571 -12.80251 -12.70621 -12.55720 -12.50970 -12.44169 -12.37587 -12.27217 -12.11635 -12.08464 -11.70613 -11.68117 -11.52466 -11.46048 -10.65824 -10.53301 -9.88878 -9.84154 -9.60035 -8.75727 -7.73127 -5.18334 0.20442 0.27176 1.50846 1.55739 1.61140 1.76808 2.44827 2.56806 2.66804 3.27059 3.40213 3.65660 3.66952 3.81413 3.86528 4.01552 4.05898 4.10154 4.20018 4.31723 4.38638 4.40844 4.47091 4.54879 4.59505 4.63654 4.73563 4.76225 4.85011 4.85998 4.94129 4.98661 5.05490 5.07586 5.10256 5.15918 5.19435 5.28874 5.32615 5.35880 5.40511 5.45510 5.50664 5.62779 5.67790 5.74961 5.77743 5.98089 6.38265 6.77182 7.22129 7.39646 7.94046 8.39583 9.28210 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.002435 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.713426 B =11497.981188 C =12457.508107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.120 0.880 4 C -0.080 4.080 5 C -0.078 4.078 6 C -0.056 4.056 7 C -0.129 4.129 8 C -0.087 4.087 9 C -0.165 4.165 10 C 0.073 3.927 11 F -0.154 7.154 12 C -0.167 4.167 13 C 0.506 3.494 14 O -0.596 6.596 15 N -0.702 5.702 16 C 0.113 3.887 17 C 0.157 3.843 18 H 0.074 0.926 19 C -0.150 4.150 20 N -0.601 5.601 21 C 0.183 3.817 22 C -0.259 4.259 23 H 0.073 0.927 24 C -0.039 4.039 25 N -0.923 5.923 26 Si 0.955 3.045 27 H -0.281 1.281 28 H -0.304 1.304 29 H -0.281 1.281 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.132 0.868 41 H 0.410 0.590 42 H 0.067 0.933 43 H 0.036 0.964 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.000 1.000 48 H 0.020 0.980 49 H 0.015 0.985 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.696 1.354 -14.613 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.120 4.120 3 H 0.137 0.863 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.056 4.056 7 C -0.147 4.147 8 C -0.105 4.105 9 C -0.184 4.184 10 C 0.054 3.946 11 F -0.132 7.132 12 C -0.186 4.186 13 C 0.294 3.706 14 O -0.479 6.479 15 N -0.352 5.352 16 C -0.013 4.013 17 C 0.050 3.950 18 H 0.093 0.907 19 C -0.209 4.209 20 N -0.324 5.324 21 C 0.038 3.962 22 C -0.389 4.389 23 H 0.091 0.909 24 C -0.235 4.235 25 N -0.569 5.569 26 Si 0.785 3.215 27 H -0.208 1.208 28 H -0.231 1.231 29 H -0.206 1.206 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.167 0.833 40 H 0.150 0.850 41 H 0.247 0.753 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.018 0.982 48 H 0.038 0.962 49 H 0.033 0.967 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.977 0.626 -14.729 18.994 hybrid contribution -1.671 0.346 0.293 1.732 sum 10.306 0.971 -14.436 17.764 Atomic orbital electron populations 1.21707 0.92575 1.01659 1.03246 1.21297 0.97509 1.01485 0.91705 0.86259 1.21221 1.01059 0.98111 0.91461 1.20726 1.02287 0.99082 0.89396 1.19902 0.94372 0.95254 0.96097 1.21505 0.95353 1.01060 0.96815 1.21383 1.00414 0.94031 0.94666 1.21418 0.92913 1.01271 1.02792 1.18019 0.91114 0.91042 0.94429 1.91460 1.75041 1.64227 1.82511 1.21217 1.02185 0.99048 0.96118 1.21216 0.79326 0.84229 0.85819 1.90605 1.41110 1.28460 1.87689 1.45955 1.51959 1.32054 1.05200 1.21827 0.97787 0.95677 0.86028 1.20821 0.83775 0.98239 0.92181 0.90742 1.22069 1.01336 0.99927 0.97563 1.44068 1.00144 1.02425 1.85744 1.20395 0.92401 0.86354 0.97095 1.19437 0.97295 0.87317 1.34805 0.90943 1.25480 0.99614 0.99703 0.98745 1.70248 1.14077 1.34815 1.37772 0.85498 0.77503 0.80503 0.78039 1.20774 1.23070 1.20640 0.93194 0.89130 0.94345 0.91613 0.93472 0.89806 0.88168 0.83150 0.82040 0.83281 0.85012 0.75313 0.91463 0.94578 0.92755 0.93530 0.90549 0.98177 0.96205 0.96652 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 8.84 71.98 0.64 -3.27 16 2 C -0.10 -2.68 2.73 -11.54 -0.03 -2.71 16 3 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 4 C -0.08 -1.97 4.01 30.60 0.12 -1.84 16 5 C -0.08 -1.40 5.10 29.85 0.15 -1.25 16 6 C -0.06 -1.07 5.13 -19.87 -0.10 -1.18 16 7 C -0.13 -2.03 9.70 22.28 0.22 -1.81 16 8 C -0.09 -1.23 10.04 22.26 0.22 -1.00 16 9 C -0.17 -2.83 10.03 22.31 0.22 -2.60 16 10 C 0.07 1.60 7.30 22.38 0.16 1.77 16 11 F -0.15 -3.74 17.27 44.97 0.78 -2.97 16 12 C -0.17 -3.63 9.68 22.31 0.22 -3.42 16 13 C 0.51 18.12 7.15 87.66 0.63 18.75 16 14 O -0.60 -24.95 15.92 -3.02 -0.05 -25.00 16 15 N -0.70 -25.79 5.28 -463.05 -2.45 -28.23 16 16 C 0.11 4.08 4.97 86.38 0.43 4.50 16 17 C 0.16 5.66 2.87 44.99 0.13 5.79 16 18 H 0.07 2.60 7.84 -2.39 -0.02 2.58 16 19 C -0.15 -4.57 9.18 71.98 0.66 -3.91 16 20 N -0.60 -26.81 2.29 -702.78 -1.61 -28.42 16 21 C 0.18 8.65 8.11 127.77 1.04 9.69 16 22 C -0.26 -12.58 9.34 84.03 0.79 -11.79 16 23 H 0.07 3.42 7.81 -2.91 -0.02 3.39 16 24 C -0.04 -1.99 5.05 84.86 0.43 -1.56 16 25 N -0.92 -49.78 10.68 21.65 0.23 -49.54 16 26 Si 0.95 41.88 29.58 68.60 2.03 43.91 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 29 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 30 H 0.05 1.75 7.56 -2.39 -0.02 1.73 16 31 H 0.09 2.06 6.56 -2.39 -0.02 2.04 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.68 7.95 -2.39 -0.02 1.66 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.46 6.51 -2.39 -0.02 1.44 16 36 H 0.10 1.38 8.08 -2.38 -0.02 1.36 16 37 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 41 H 0.41 15.80 7.31 -92.71 -0.68 15.13 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 43 H 0.04 1.44 7.84 -2.39 -0.02 1.42 16 44 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.05 1.47 6.66 -2.38 -0.02 1.45 16 46 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.00 0.00 7.44 -2.39 -0.02 -0.02 16 48 H 0.02 0.83 6.43 -2.39 -0.02 0.81 16 49 H 0.01 0.78 7.17 -2.39 -0.02 0.76 16 50 H 0.24 13.14 8.31 -92.71 -0.77 12.37 16 Total: -1.00 -62.44 406.17 5.10 -57.34 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.25 Total: 28.76 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 5.92 Total: 4.15 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -3.82 Total: -106.20 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.05 Total: -25.00 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.78 Total: -2.97 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -62.44 5.10 -57.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725192713.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.524 kcal (2) G-P(sol) polarization free energy of solvation -62.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds