Wall clock time and date at job start Tue Mar 31 2020 20:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47400 * 2 1 4 4 C 1.53001 * 109.47103 * 240.00287 * 2 1 3 5 5 N 1.46503 * 109.47315 * 184.99791 * 4 2 1 6 6 C 1.34773 * 119.99809 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00399 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99951 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.46980 * 300.00711 * 8 6 5 10 10 C 1.53002 * 109.46878 * 59.99896 * 8 6 5 11 11 C 1.52994 * 109.47216 * 180.02562 * 8 6 5 12 12 C 1.53002 * 109.47045 * 175.00110 * 11 8 6 13 13 C 1.50705 * 109.47066 * 180.02562 * 12 11 8 14 14 C 1.38267 * 119.98359 * 269.72426 * 13 12 11 15 15 C 1.38226 * 120.04613 * 179.72690 * 14 13 12 16 16 C 1.38217 * 120.02928 * 0.54923 * 15 14 13 17 17 C 1.38436 * 119.97070 * 359.72728 * 16 15 14 18 18 F 1.35105 * 120.02736 * 180.02562 * 17 16 15 19 19 C 1.38172 * 119.98586 * 90.00122 * 13 12 11 20 20 N 1.46501 * 109.47227 * 120.00364 * 2 1 3 21 21 C 1.46499 * 120.00202 * 60.00188 * 20 2 1 22 22 C 1.36936 * 120.00067 * 239.99796 * 20 2 1 23 23 H 1.08000 * 119.99945 * 23.06744 * 22 20 2 24 24 C 1.38814 * 120.00211 * 203.06984 * 22 20 2 25 25 N 1.31620 * 119.99976 * 11.69852 * 24 22 20 26 26 Si 1.86797 * 120.00385 * 191.70515 * 24 22 20 27 27 H 1.48503 * 109.46549 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47313 * 119.99245 * 26 24 22 29 29 H 1.48492 * 109.47170 * 239.99898 * 26 24 22 30 30 H 1.09006 * 109.46908 * 299.99409 * 1 2 3 31 31 H 1.08993 * 109.47541 * 59.99729 * 1 2 3 32 32 H 1.09007 * 109.47328 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47138 * 305.00333 * 4 2 1 34 34 H 1.09004 * 109.46761 * 64.99845 * 4 2 1 35 35 H 0.97000 * 119.99914 * 0.02562 * 5 4 2 36 36 H 1.09003 * 109.47255 * 60.00677 * 10 8 6 37 37 H 1.09002 * 109.47316 * 179.97438 * 10 8 6 38 38 H 1.08993 * 109.47274 * 300.00133 * 10 8 6 39 39 H 1.08996 * 109.47341 * 294.99880 * 11 8 6 40 40 H 1.08997 * 109.47178 * 55.00572 * 11 8 6 41 41 H 1.08997 * 109.47327 * 299.99806 * 12 11 8 42 42 H 1.08997 * 109.47237 * 60.00426 * 12 11 8 43 43 H 1.07997 * 119.97401 * 359.97438 * 14 13 12 44 44 H 1.08000 * 119.98488 * 180.27617 * 15 14 13 45 45 H 1.07991 * 120.01597 * 179.74907 * 16 15 14 46 46 H 1.07998 * 120.01693 * 359.97438 * 19 13 12 47 47 H 1.09003 * 109.47298 * 93.93950 * 21 20 2 48 48 H 1.09003 * 109.47538 * 213.94462 * 21 20 2 49 49 H 1.09007 * 109.46886 * 333.94468 * 21 20 2 50 50 H 0.96996 * 120.00573 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1729 -1.4291 -2.1909 7 8 3.5698 -1.8840 -3.1396 8 6 5.6748 -1.5377 -2.1303 9 1 6.1097 -0.5393 -2.0844 10 6 6.0791 -2.3278 -0.8840 11 6 6.1847 -2.2588 -3.3796 12 6 7.7147 -2.2593 -3.3794 13 6 8.2170 -2.9690 -4.6103 14 6 8.4523 -4.3310 -4.5750 15 6 8.9076 -4.9843 -5.7049 16 6 9.1391 -4.2746 -6.8681 17 6 8.9093 -2.9098 -6.9029 18 9 9.1346 -2.2151 -8.0395 19 6 8.4476 -2.2573 -5.7720 20 7 2.0183 -0.6907 1.1961 21 6 1.6645 -2.0933 1.4279 22 6 2.8056 -0.0253 2.0975 23 1 2.7713 1.0528 2.1520 24 6 3.6479 -0.7364 2.9412 25 7 3.8660 -2.0166 2.7272 26 14 4.4716 0.1235 4.3804 27 1 4.0658 1.5519 4.4016 28 1 4.0577 -0.5279 5.6491 29 1 5.9464 0.0305 4.2344 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6052 -1.7198 -1.2953 34 1 1.7515 -0.1582 -2.1370 35 1 3.9824 -0.4628 -0.4317 36 1 5.6442 -3.3263 -0.9298 37 1 7.1653 -2.4068 -0.8404 38 1 5.7158 -1.8137 0.0058 39 1 5.8211 -3.2863 -3.3800 40 1 5.8217 -1.7445 -4.2695 41 1 8.0784 -1.2318 -3.3791 42 1 8.0777 -2.7735 -2.4896 43 1 8.2764 -4.8856 -3.6651 44 1 9.0868 -6.0489 -5.6774 45 1 9.4987 -4.7845 -7.7495 46 1 8.2676 -1.1928 -5.7982 47 1 2.4508 -2.7365 1.0328 48 1 1.5552 -2.2684 2.4982 49 1 0.7240 -2.3186 0.9250 50 1 4.4542 -2.5136 3.3170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725192714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:19 Heat of formation + Delta-G solvation = -59.374809 kcal Electronic energy + Delta-G solvation = -29085.192097 eV Core-core repulsion = 25026.650900 eV Total energy + Delta-G solvation = -4058.541197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -49.07198 -39.68246 -39.13948 -36.82247 -35.40241 -33.64663 -32.49859 -31.78312 -30.72614 -29.34177 -28.32094 -26.06115 -25.84606 -24.98007 -23.14623 -22.92443 -22.27986 -20.87608 -19.49569 -18.97098 -17.53924 -16.94733 -16.63858 -16.42018 -16.27812 -15.78518 -15.56668 -15.28954 -14.96790 -14.41983 -14.17613 -14.02783 -13.72984 -13.57396 -13.24011 -12.95927 -12.81962 -12.65119 -12.55928 -12.34733 -12.13682 -11.97648 -11.90455 -11.61914 -11.51060 -11.36750 -11.15791 -11.10845 -10.84933 -10.74062 -10.60408 -10.55499 -10.43326 -10.29410 -9.89916 -9.80547 -9.23558 -9.10850 -8.83587 -8.63563 -8.30851 -6.83988 -5.79732 -3.27606 0.95432 0.99650 3.21663 3.30277 3.36068 3.39886 3.40053 3.86520 4.03075 4.40802 4.45609 4.56280 4.80237 4.98858 4.99767 5.06963 5.16321 5.20900 5.33273 5.37490 5.41725 5.51624 5.59239 5.61205 5.73369 5.74635 5.87157 5.89679 5.96223 6.04227 6.08465 6.09371 6.11979 6.16532 6.20436 6.36535 6.37763 6.39869 6.44623 6.66041 6.68626 6.71036 6.80016 6.89668 7.19333 7.36919 7.69846 7.75435 8.27582 8.31438 8.87719 9.15900 9.78805 10.29032 11.22908 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.002422 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.564199 B =11556.099840 C =12584.357184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.067 0.933 4 C 0.108 3.892 5 N -0.699 5.699 6 C 0.513 3.487 7 O -0.565 6.565 8 C -0.108 4.108 9 H 0.091 0.909 10 C -0.144 4.144 11 C -0.090 4.090 12 C -0.087 4.087 13 C -0.044 4.044 14 C -0.127 4.127 15 C -0.089 4.089 16 C -0.164 4.164 17 C 0.098 3.902 18 F -0.143 7.143 19 C -0.152 4.152 20 N -0.594 5.594 21 C 0.164 3.836 22 C -0.259 4.259 23 H 0.067 0.933 24 C 0.006 3.994 25 N -0.899 5.899 26 Si 0.900 3.100 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.414 0.586 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.029 0.971 48 H 0.041 0.959 49 H -0.003 1.003 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.745 -2.276 -13.223 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.299 3.701 7 O -0.446 6.446 8 C -0.130 4.130 9 H 0.109 0.891 10 C -0.202 4.202 11 C -0.128 4.128 12 C -0.124 4.124 13 C -0.044 4.044 14 C -0.145 4.145 15 C -0.107 4.107 16 C -0.183 4.183 17 C 0.078 3.922 18 F -0.121 7.121 19 C -0.171 4.171 20 N -0.317 5.317 21 C 0.019 3.981 22 C -0.388 4.388 23 H 0.085 0.915 24 C -0.193 4.193 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.152 0.848 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.016 0.984 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.408 -2.677 -13.795 16.376 hybrid contribution 0.714 0.581 1.005 1.363 sum 9.121 -2.096 -12.790 15.849 Atomic orbital electron populations 1.22172 0.97600 1.01421 1.00596 1.20643 0.92537 0.95850 0.86057 0.91443 1.21902 0.80443 1.00806 0.98717 1.45861 1.07947 1.58012 1.23131 1.20499 0.89691 0.77636 0.82315 1.90626 1.70559 1.49098 1.34276 1.21272 0.92828 1.01419 0.97443 0.89067 1.21812 1.01087 1.00697 0.96580 1.21334 0.92556 1.01753 0.97180 1.20793 0.96329 1.00576 0.94676 1.19818 0.95907 0.93779 0.94898 1.21195 1.00178 0.94054 0.99085 1.21011 0.97632 1.00073 0.91999 1.21113 1.04539 0.92498 1.00105 1.17718 1.01566 0.90229 0.82645 1.91495 1.92450 1.79365 1.48815 1.21074 1.02818 1.01168 0.92031 1.43934 1.57856 1.09648 1.20218 1.20744 0.93907 0.84510 0.98893 1.19245 1.15951 0.91111 1.12535 0.91531 1.24989 0.97909 0.96127 1.00236 1.70084 1.38969 1.07223 1.38124 0.86269 0.78955 0.78906 0.82875 1.20476 1.21767 1.21755 0.92486 0.93607 0.92982 0.92587 0.93105 0.74872 0.92322 0.92169 0.90320 0.91096 0.91182 0.90593 0.89929 0.85143 0.85059 0.85024 0.84754 0.95282 0.93980 0.98436 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.18 37.15 0.34 -2.25 16 2 C 0.16 2.96 2.87 -67.93 -0.19 2.76 16 3 H 0.07 1.25 7.86 -51.93 -0.41 0.85 16 4 C 0.11 1.99 4.97 -4.04 -0.02 1.97 16 5 N -0.70 -12.96 5.28 -60.29 -0.32 -13.28 16 6 C 0.51 9.26 7.15 -10.99 -0.08 9.18 16 7 O -0.57 -11.83 15.92 5.56 0.09 -11.75 16 8 C -0.11 -1.53 2.72 -91.77 -0.25 -1.78 16 9 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 10 C -0.14 -2.09 8.85 37.16 0.33 -1.76 16 11 C -0.09 -1.15 4.01 -26.73 -0.11 -1.26 16 12 C -0.09 -0.87 5.10 -27.88 -0.14 -1.01 16 13 C -0.04 -0.45 5.13 -104.63 -0.54 -0.99 16 14 C -0.13 -1.20 9.70 -39.57 -0.38 -1.59 16 15 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 16 C -0.16 -1.53 10.03 -39.52 -0.40 -1.93 16 17 C 0.10 1.06 7.30 -39.42 -0.29 0.77 16 18 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 19 C -0.15 -1.62 9.68 -39.51 -0.38 -2.00 16 20 N -0.59 -13.31 2.29 -173.48 -0.40 -13.70 16 21 C 0.16 3.81 8.11 59.85 0.49 4.29 16 22 C -0.26 -6.35 9.32 -15.06 -0.14 -6.49 16 23 H 0.07 1.63 7.82 -52.49 -0.41 1.22 16 24 C 0.01 0.16 5.12 -17.43 -0.09 0.07 16 25 N -0.90 -23.53 10.65 55.49 0.59 -22.94 16 26 Si 0.90 20.25 29.57 -169.99 -5.03 15.22 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.87 6.66 -51.93 -0.35 0.52 16 33 H 0.06 1.12 7.84 -51.93 -0.41 0.72 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.41 8.03 7.31 -40.82 -0.30 7.74 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 38 H 0.08 1.36 7.56 -51.93 -0.39 0.97 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.96 7.96 -51.93 -0.41 0.55 16 41 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 42 H 0.08 0.77 6.51 -51.93 -0.34 0.43 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.03 0.73 7.41 -51.93 -0.39 0.35 16 48 H 0.04 1.06 7.23 -51.93 -0.38 0.69 16 49 H 0.00 -0.06 6.43 -51.93 -0.33 -0.39 16 50 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 406.21 15.07 6.12 6.12 Total: -1.00 -28.25 406.21 -9.39 -37.63 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -8.23 Total: 7.47 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.25 Total: -3.16 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.12 Total: -49.93 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.25 -9.39 -37.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725192714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.742 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds