Wall clock time and date at job start Tue Mar 31 2020 20:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47400 * 2 1 4 4 C 1.53001 * 109.47103 * 240.00287 * 2 1 3 5 5 N 1.46503 * 109.47315 * 184.99791 * 4 2 1 6 6 C 1.34773 * 119.99809 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00399 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99951 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.46980 * 300.00711 * 8 6 5 10 10 C 1.53002 * 109.46878 * 59.99896 * 8 6 5 11 11 C 1.52994 * 109.47216 * 180.02562 * 8 6 5 12 12 C 1.53002 * 109.47045 * 175.00110 * 11 8 6 13 13 C 1.50705 * 109.47066 * 180.02562 * 12 11 8 14 14 C 1.38267 * 119.98359 * 269.72426 * 13 12 11 15 15 C 1.38226 * 120.04613 * 179.72690 * 14 13 12 16 16 C 1.38217 * 120.02928 * 0.54923 * 15 14 13 17 17 C 1.38436 * 119.97070 * 359.72728 * 16 15 14 18 18 F 1.35105 * 120.02736 * 180.02562 * 17 16 15 19 19 C 1.38172 * 119.98586 * 90.00122 * 13 12 11 20 20 N 1.46501 * 109.47227 * 120.00364 * 2 1 3 21 21 C 1.46499 * 120.00202 * 60.00188 * 20 2 1 22 22 C 1.36936 * 120.00067 * 239.99796 * 20 2 1 23 23 H 1.08000 * 119.99945 * 23.06744 * 22 20 2 24 24 C 1.38814 * 120.00211 * 203.06984 * 22 20 2 25 25 N 1.31620 * 119.99976 * 11.69852 * 24 22 20 26 26 Si 1.86797 * 120.00385 * 191.70515 * 24 22 20 27 27 H 1.48503 * 109.46549 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47313 * 119.99245 * 26 24 22 29 29 H 1.48492 * 109.47170 * 239.99898 * 26 24 22 30 30 H 1.09006 * 109.46908 * 299.99409 * 1 2 3 31 31 H 1.08993 * 109.47541 * 59.99729 * 1 2 3 32 32 H 1.09007 * 109.47328 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47138 * 305.00333 * 4 2 1 34 34 H 1.09004 * 109.46761 * 64.99845 * 4 2 1 35 35 H 0.97000 * 119.99914 * 0.02562 * 5 4 2 36 36 H 1.09003 * 109.47255 * 60.00677 * 10 8 6 37 37 H 1.09002 * 109.47316 * 179.97438 * 10 8 6 38 38 H 1.08993 * 109.47274 * 300.00133 * 10 8 6 39 39 H 1.08996 * 109.47341 * 294.99880 * 11 8 6 40 40 H 1.08997 * 109.47178 * 55.00572 * 11 8 6 41 41 H 1.08997 * 109.47327 * 299.99806 * 12 11 8 42 42 H 1.08997 * 109.47237 * 60.00426 * 12 11 8 43 43 H 1.07997 * 119.97401 * 359.97438 * 14 13 12 44 44 H 1.08000 * 119.98488 * 180.27617 * 15 14 13 45 45 H 1.07991 * 120.01597 * 179.74907 * 16 15 14 46 46 H 1.07998 * 120.01693 * 359.97438 * 19 13 12 47 47 H 1.09003 * 109.47298 * 93.93950 * 21 20 2 48 48 H 1.09003 * 109.47538 * 213.94462 * 21 20 2 49 49 H 1.09007 * 109.46886 * 333.94468 * 21 20 2 50 50 H 0.96996 * 120.00573 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1729 -1.4291 -2.1909 7 8 3.5698 -1.8840 -3.1396 8 6 5.6748 -1.5377 -2.1303 9 1 6.1097 -0.5393 -2.0844 10 6 6.0791 -2.3278 -0.8840 11 6 6.1847 -2.2588 -3.3796 12 6 7.7147 -2.2593 -3.3794 13 6 8.2170 -2.9690 -4.6103 14 6 8.4523 -4.3310 -4.5750 15 6 8.9076 -4.9843 -5.7049 16 6 9.1391 -4.2746 -6.8681 17 6 8.9093 -2.9098 -6.9029 18 9 9.1346 -2.2151 -8.0395 19 6 8.4476 -2.2573 -5.7720 20 7 2.0183 -0.6907 1.1961 21 6 1.6645 -2.0933 1.4279 22 6 2.8056 -0.0253 2.0975 23 1 2.7713 1.0528 2.1520 24 6 3.6479 -0.7364 2.9412 25 7 3.8660 -2.0166 2.7272 26 14 4.4716 0.1235 4.3804 27 1 4.0658 1.5519 4.4016 28 1 4.0577 -0.5279 5.6491 29 1 5.9464 0.0305 4.2344 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6052 -1.7198 -1.2953 34 1 1.7515 -0.1582 -2.1370 35 1 3.9824 -0.4628 -0.4317 36 1 5.6442 -3.3263 -0.9298 37 1 7.1653 -2.4068 -0.8404 38 1 5.7158 -1.8137 0.0058 39 1 5.8211 -3.2863 -3.3800 40 1 5.8217 -1.7445 -4.2695 41 1 8.0784 -1.2318 -3.3791 42 1 8.0777 -2.7735 -2.4896 43 1 8.2764 -4.8856 -3.6651 44 1 9.0868 -6.0489 -5.6774 45 1 9.4987 -4.7845 -7.7495 46 1 8.2676 -1.1928 -5.7982 47 1 2.4508 -2.7365 1.0328 48 1 1.5552 -2.2684 2.4982 49 1 0.7240 -2.3186 0.9250 50 1 4.4542 -2.5136 3.3170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725192714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:18 Heat of formation + Delta-G solvation = -72.345585 kcal Electronic energy + Delta-G solvation = -29085.754552 eV Core-core repulsion = 25026.650900 eV Total energy + Delta-G solvation = -4059.103652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.90235 -40.93707 -40.07532 -38.43636 -36.52314 -35.31055 -33.85969 -33.02867 -31.46940 -31.04497 -29.27889 -27.96312 -27.23802 -26.04611 -24.88566 -23.67089 -23.35750 -21.82636 -21.06201 -20.37619 -18.79268 -18.41904 -17.73040 -17.31675 -17.14406 -17.07785 -16.90943 -16.59915 -16.32554 -15.86632 -15.31600 -15.25023 -14.93920 -14.63564 -14.49902 -14.34583 -14.18215 -13.87285 -13.68487 -13.61956 -13.51313 -13.27783 -13.10143 -12.81680 -12.68529 -12.59847 -12.49741 -12.42874 -12.41870 -12.25270 -12.08343 -12.02894 -11.71521 -11.64655 -11.56513 -11.44771 -10.65664 -10.55261 -9.88870 -9.84121 -9.60483 -8.71420 -7.71956 -5.21074 0.19971 0.27047 1.50522 1.55914 1.62259 1.76972 2.44850 2.56660 2.66395 3.26300 3.41291 3.65806 3.67672 3.83790 3.85049 4.00062 4.05879 4.10510 4.20306 4.31396 4.37849 4.41118 4.52862 4.54000 4.55616 4.63407 4.73278 4.77196 4.86166 4.86685 4.95536 4.99667 5.04972 5.06799 5.10246 5.15105 5.20293 5.29053 5.33290 5.37289 5.39943 5.45907 5.50963 5.62903 5.68717 5.76075 5.78991 5.97525 6.40784 6.77372 7.23599 7.39721 7.93969 8.40667 9.29059 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.002422 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.564199 B =11556.099840 C =12584.357184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.073 0.927 4 C 0.114 3.886 5 N -0.702 5.702 6 C 0.506 3.494 7 O -0.597 6.597 8 C -0.100 4.100 9 H 0.115 0.885 10 C -0.133 4.133 11 C -0.080 4.080 12 C -0.078 4.078 13 C -0.056 4.056 14 C -0.133 4.133 15 C -0.088 4.088 16 C -0.165 4.165 17 C 0.075 3.925 18 F -0.152 7.152 19 C -0.163 4.163 20 N -0.601 5.601 21 C 0.183 3.817 22 C -0.259 4.259 23 H 0.070 0.930 24 C -0.037 4.037 25 N -0.922 5.922 26 Si 0.955 3.045 27 H -0.272 1.272 28 H -0.302 1.302 29 H -0.291 1.291 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.042 0.958 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.144 0.856 44 H 0.159 0.841 45 H 0.150 0.850 46 H 0.138 0.862 47 H 0.002 0.998 48 H 0.015 0.985 49 H 0.018 0.982 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 -1.749 -13.616 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.091 0.909 4 C -0.013 4.013 5 N -0.351 5.351 6 C 0.294 3.706 7 O -0.479 6.479 8 C -0.121 4.121 9 H 0.133 0.867 10 C -0.191 4.191 11 C -0.118 4.118 12 C -0.115 4.115 13 C -0.056 4.056 14 C -0.151 4.151 15 C -0.106 4.106 16 C -0.184 4.184 17 C 0.056 3.944 18 F -0.131 7.131 19 C -0.181 4.181 20 N -0.324 5.324 21 C 0.038 3.962 22 C -0.389 4.389 23 H 0.088 0.912 24 C -0.233 4.233 25 N -0.568 5.568 26 Si 0.785 3.215 27 H -0.197 1.197 28 H -0.230 1.230 29 H -0.218 1.218 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.247 0.753 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.162 0.838 44 H 0.177 0.823 45 H 0.167 0.833 46 H 0.156 0.844 47 H 0.020 0.980 48 H 0.033 0.967 49 H 0.037 0.963 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.151 -2.120 -14.203 17.028 hybrid contribution 0.421 0.407 1.081 1.230 sum 9.572 -1.713 -13.121 16.332 Atomic orbital electron populations 1.22066 0.95345 1.01538 1.01937 1.20815 0.94091 0.95539 0.84576 0.90908 1.21820 0.80540 0.99832 0.99090 1.45951 1.08038 1.58040 1.23097 1.21219 0.91363 0.76569 0.81459 1.90604 1.71622 1.50294 1.35389 1.21296 0.89970 1.02875 0.97944 0.86738 1.21700 1.02904 0.99234 0.95212 1.21214 0.94602 1.00294 0.95725 1.20720 0.93926 1.01678 0.95146 1.19892 0.96587 0.94318 0.94811 1.21487 0.99676 0.93918 1.00031 1.21352 0.96582 1.01412 0.91275 1.21405 1.03847 0.91990 1.01144 1.17991 1.02782 0.91055 0.82588 1.91466 1.92670 1.79673 1.49262 1.21213 1.03050 1.01621 0.92264 1.44039 1.57730 1.09281 1.21334 1.20404 0.93905 0.84854 0.97050 1.19465 1.15448 0.91317 1.12646 0.91230 1.25549 0.98888 0.96652 1.02219 1.70227 1.39693 1.08238 1.38661 0.85392 0.77918 0.78229 0.79914 1.19679 1.23018 1.21833 0.92761 0.90648 0.93451 0.94459 0.91650 0.75304 0.93926 0.88985 0.93318 0.92654 0.92420 0.89251 0.88771 0.83793 0.82338 0.83270 0.84364 0.98004 0.96655 0.96343 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 9.18 71.98 0.66 -3.93 16 2 C 0.16 5.70 2.87 44.99 0.13 5.83 16 3 H 0.07 2.58 7.86 -2.39 -0.02 2.56 16 4 C 0.11 4.12 4.97 86.38 0.43 4.55 16 5 N -0.70 -25.96 5.28 -463.05 -2.45 -28.40 16 6 C 0.51 18.25 7.15 87.66 0.63 18.88 16 7 O -0.60 -25.13 15.92 -3.02 -0.05 -25.18 16 8 C -0.10 -2.73 2.72 -11.54 -0.03 -2.76 16 9 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 10 C -0.13 -3.76 8.85 71.98 0.64 -3.13 16 11 C -0.08 -1.97 4.01 30.59 0.12 -1.85 16 12 C -0.08 -1.41 5.10 29.85 0.15 -1.25 16 13 C -0.06 -1.08 5.13 -19.87 -0.10 -1.18 16 14 C -0.13 -2.27 9.70 22.27 0.22 -2.06 16 15 C -0.09 -1.33 10.04 22.26 0.22 -1.11 16 16 C -0.17 -2.84 10.03 22.31 0.22 -2.61 16 17 C 0.07 1.58 7.30 22.38 0.16 1.74 16 18 F -0.15 -3.50 17.27 44.97 0.78 -2.72 16 19 C -0.16 -3.34 9.68 22.31 0.22 -3.12 16 20 N -0.60 -26.75 2.29 -702.78 -1.61 -28.36 16 21 C 0.18 8.60 8.11 127.77 1.04 9.63 16 22 C -0.26 -12.56 9.32 84.03 0.78 -11.78 16 23 H 0.07 3.31 7.82 -2.91 -0.02 3.29 16 24 C -0.04 -1.84 5.12 84.86 0.43 -1.41 16 25 N -0.92 -49.04 10.65 21.65 0.23 -48.81 16 26 Si 0.96 41.56 29.57 68.60 2.03 43.59 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 28 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 29 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 30 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.49 6.66 -2.38 -0.02 1.48 16 33 H 0.04 1.49 7.84 -2.38 -0.02 1.47 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.41 15.91 7.31 -92.71 -0.68 15.24 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.99 6.57 -2.39 -0.02 1.98 16 38 H 0.05 1.69 7.56 -2.39 -0.02 1.67 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.56 7.96 -2.39 -0.02 1.55 16 41 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 42 H 0.09 1.49 6.51 -2.39 -0.02 1.48 16 43 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.15 1.93 8.06 -2.92 -0.02 1.91 16 46 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 47 H 0.00 0.09 7.41 -2.39 -0.02 0.07 16 48 H 0.01 0.77 7.23 -2.39 -0.02 0.75 16 49 H 0.02 0.77 6.43 -2.38 -0.02 0.75 16 50 H 0.25 12.92 8.31 -92.71 -0.77 12.15 16 Total: -1.00 -61.30 406.21 5.10 -56.19 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.25 Total: 29.25 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 5.92 Total: 4.44 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.82 Total: -105.56 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -61.30 5.10 -56.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725192714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.153 kcal (2) G-P(sol) polarization free energy of solvation -61.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds