Wall clock time and date at job start Tue Mar 31 2020 20:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47650 * 2 1 4 4 C 1.53006 * 109.47157 * 240.00111 * 2 1 3 5 5 C 1.53003 * 109.46789 * 64.99899 * 4 2 1 6 6 C 1.50708 * 109.46910 * 180.02562 * 5 4 2 7 7 C 1.38262 * 119.98828 * 269.73026 * 6 5 4 8 8 C 1.38224 * 120.05267 * 179.72999 * 7 6 5 9 9 C 1.38220 * 120.01994 * 0.53785 * 8 7 6 10 10 C 1.38431 * 119.97900 * 359.73545 * 9 8 7 11 11 F 1.35094 * 120.02912 * 180.02562 * 10 9 8 12 12 C 1.38176 * 119.98355 * 90.00089 * 6 5 4 13 13 C 1.50697 * 109.47635 * 120.00415 * 2 1 3 14 14 O 1.21272 * 120.00577 * 119.99418 * 13 2 1 15 15 N 1.34785 * 119.99646 * 299.72171 * 13 2 1 16 16 C 1.46492 * 120.00159 * 180.27041 * 15 13 2 17 17 C 1.52994 * 109.47491 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47366 * 64.99642 * 17 16 15 19 19 C 1.52999 * 109.47580 * 185.00458 * 17 16 15 20 20 N 1.46505 * 109.46797 * 305.00433 * 17 16 15 21 21 C 1.46500 * 119.99654 * 299.99480 * 20 17 16 22 22 C 1.36931 * 120.00439 * 120.00145 * 20 17 16 23 23 H 1.08003 * 119.99985 * 20.35741 * 22 20 17 24 24 C 1.38818 * 120.00114 * 200.36294 * 22 20 17 25 25 N 1.31609 * 119.99999 * 14.99141 * 24 22 20 26 26 Si 1.86794 * 119.99950 * 194.99209 * 24 22 20 27 27 H 1.48505 * 109.47145 * 85.00100 * 26 24 22 28 28 H 1.48501 * 109.47233 * 205.00018 * 26 24 22 29 29 H 1.48503 * 109.47338 * 325.00175 * 26 24 22 30 30 H 1.09003 * 109.46492 * 300.00009 * 1 2 3 31 31 H 1.09003 * 109.47174 * 59.99512 * 1 2 3 32 32 H 1.08995 * 109.46958 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47220 * 184.99694 * 4 2 1 34 34 H 1.08999 * 109.46676 * 305.00384 * 4 2 1 35 35 H 1.08996 * 109.47072 * 299.99886 * 5 4 2 36 36 H 1.08999 * 109.47115 * 60.00754 * 5 4 2 37 37 H 1.08006 * 119.97412 * 359.97438 * 7 6 5 38 38 H 1.07992 * 119.99049 * 180.27303 * 8 7 6 39 39 H 1.08006 * 120.00890 * 179.75312 * 9 8 7 40 40 H 1.08000 * 120.01849 * 359.97438 * 12 6 5 41 41 H 0.97000 * 119.99862 * 0.27577 * 15 13 2 42 42 H 1.09002 * 109.47403 * 300.00802 * 16 15 13 43 43 H 1.08996 * 109.46940 * 59.99875 * 16 15 13 44 44 H 1.08998 * 109.47438 * 59.99227 * 19 17 16 45 45 H 1.09001 * 109.47527 * 179.97438 * 19 17 16 46 46 H 1.09006 * 109.46774 * 299.99599 * 19 17 16 47 47 H 1.09000 * 109.46949 * 95.12121 * 21 20 17 48 48 H 1.08999 * 109.47422 * 215.11552 * 21 20 17 49 49 H 1.09006 * 109.47527 * 335.11904 * 21 20 17 50 50 H 0.97004 * 120.00419 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6352 0.0690 -2.4953 6 6 2.1370 -0.6417 -3.7259 7 6 3.3883 -0.3448 -4.2335 8 6 3.8521 -0.9998 -5.3588 9 6 3.0607 -1.9446 -5.9844 10 6 1.8054 -2.2387 -5.4805 11 9 1.0312 -3.1624 -6.0909 12 6 1.3440 -1.5858 -4.3497 13 6 2.0324 -0.7105 1.2303 14 8 2.7296 -1.6965 1.1191 15 7 1.7115 -0.2467 2.4545 16 6 2.2047 -0.9338 3.6506 17 6 1.6989 -0.2098 4.8999 18 1 0.6129 -0.2873 4.9501 19 6 2.3142 -0.8510 6.1453 20 7 2.0852 1.2020 4.8360 21 6 3.5009 1.5713 4.7617 22 6 1.1230 2.1762 4.8459 23 1 0.1351 1.9557 5.2225 24 6 1.4174 3.4473 4.3718 25 7 2.5001 3.6462 3.6504 26 14 0.2769 4.8754 4.7578 27 1 0.6271 5.4440 6.0843 28 1 0.4250 5.9228 3.7156 29 1 -1.1280 4.3948 4.7805 30 1 -0.3632 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1263 -0.7994 -1.2057 34 1 1.6053 -1.7197 -1.2952 35 1 0.5489 0.1472 -2.5389 36 1 2.0699 1.0675 -2.4494 37 1 4.0055 0.3968 -3.7480 38 1 4.8315 -0.7702 -5.7518 39 1 3.4217 -2.4535 -6.8661 40 1 0.3650 -1.8148 -3.9554 41 1 1.1538 0.5419 2.5436 42 1 1.8419 -1.9617 3.6548 43 1 3.2947 -0.9335 3.6463 44 1 3.4002 -0.7735 6.0951 45 1 1.9541 -0.3349 7.0354 46 1 2.0267 -1.9014 6.1928 47 1 3.7840 1.7177 3.7194 48 1 3.6649 2.4955 5.3158 49 1 4.1073 0.7756 5.1947 50 1 2.7060 4.5344 3.3194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725192715.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:25 Heat of formation + Delta-G solvation = -59.104652 kcal Electronic energy + Delta-G solvation = -28983.972847 eV Core-core repulsion = 24925.443365 eV Total energy + Delta-G solvation = -4058.529482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.07853 -39.69518 -39.14816 -36.84002 -35.42897 -33.66643 -32.51383 -31.79724 -30.74214 -29.34685 -28.37422 -26.07993 -25.90280 -25.03099 -23.16591 -22.94317 -22.26503 -20.89198 -19.50144 -18.99958 -17.55091 -16.95966 -16.59767 -16.44251 -16.30425 -15.79033 -15.57999 -15.32167 -15.01695 -14.53588 -14.13592 -13.85688 -13.84072 -13.58565 -13.34628 -12.98390 -12.81202 -12.73978 -12.56680 -12.38992 -12.13499 -12.03690 -11.96602 -11.66476 -11.54164 -11.39169 -11.25309 -11.10953 -10.83273 -10.75875 -10.67544 -10.58360 -10.43849 -10.31700 -9.88591 -9.81647 -9.25085 -9.11693 -8.83862 -8.62861 -8.31776 -6.87715 -5.79956 -3.25074 0.95362 0.99462 3.21221 3.32057 3.35793 3.39305 3.40418 3.84474 4.02916 4.41460 4.45331 4.55179 4.79177 4.96996 5.01982 5.03827 5.12919 5.16099 5.32631 5.33258 5.37616 5.47993 5.54503 5.59771 5.70916 5.77246 5.84404 5.87769 5.93664 5.95761 5.97247 6.06004 6.08160 6.10173 6.15939 6.28537 6.36015 6.38751 6.41140 6.44139 6.67987 6.69715 6.78424 6.88825 7.18347 7.36257 7.68255 7.75108 8.26500 8.29925 8.86633 9.15280 9.79220 10.28245 11.23167 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.002389 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.702339 B =11719.117442 C =12576.042363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 H 0.100 0.900 4 C -0.090 4.090 5 C -0.087 4.087 6 C -0.044 4.044 7 C -0.127 4.127 8 C -0.089 4.089 9 C -0.164 4.164 10 C 0.097 3.903 11 F -0.143 7.143 12 C -0.152 4.152 13 C 0.514 3.486 14 O -0.565 6.565 15 N -0.699 5.699 16 C 0.108 3.892 17 C 0.158 3.842 18 H 0.067 0.933 19 C -0.158 4.158 20 N -0.594 5.594 21 C 0.163 3.837 22 C -0.260 4.260 23 H 0.068 0.932 24 C 0.005 3.995 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.414 0.586 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.029 0.971 48 H 0.041 0.959 49 H -0.001 1.001 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -7.947 -14.175 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 H 0.118 0.882 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.044 4.044 7 C -0.145 4.145 8 C -0.107 4.107 9 C -0.183 4.183 10 C 0.078 3.922 11 F -0.121 7.121 12 C -0.171 4.171 13 C 0.299 3.701 14 O -0.445 6.445 15 N -0.350 5.350 16 C -0.019 4.019 17 C 0.049 3.951 18 H 0.086 0.914 19 C -0.218 4.218 20 N -0.317 5.317 21 C 0.019 3.981 22 C -0.389 4.389 23 H 0.086 0.914 24 C -0.194 4.194 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.206 1.206 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.251 0.749 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.059 0.941 49 H 0.017 0.983 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.527 -8.494 -14.319 16.657 hybrid contribution -0.824 1.121 0.135 1.398 sum -1.351 -7.373 -14.183 16.042 Atomic orbital electron populations 1.21815 0.93273 1.02261 1.02870 1.21277 0.97425 1.01313 0.93193 0.88170 1.21328 1.02062 0.98623 0.90757 1.20795 1.01697 0.98892 0.91024 1.19814 0.93716 0.95048 0.95832 1.21207 0.95805 1.00843 0.96642 1.21013 0.99462 0.94999 0.95218 1.21116 0.93639 1.01201 1.02298 1.17711 0.90166 0.90497 0.93804 1.91491 1.74537 1.63766 1.82335 1.21065 1.01755 0.98508 0.95761 1.20467 0.80212 0.84410 0.84966 1.90625 1.39291 1.27378 1.87229 1.45863 1.52500 1.31848 1.04759 1.21905 0.99058 0.94837 0.86094 1.20636 0.97902 0.85467 0.91059 0.91429 1.22176 1.01276 0.99043 0.99297 1.43957 1.02873 0.99066 1.85804 1.20748 0.82590 0.95489 0.99286 1.19211 0.93738 0.90485 1.35494 0.91415 1.24928 0.97809 0.98478 0.98188 1.70093 1.26877 1.21265 1.36295 0.86343 0.80286 0.82640 0.77623 1.21598 1.21837 1.20634 0.91609 0.91633 0.92451 0.90901 0.91314 0.90279 0.90187 0.85124 0.85050 0.85025 0.84760 0.74871 0.93072 0.92569 0.92978 0.92452 0.93587 0.95242 0.94072 0.98272 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.85 37.16 0.33 -1.40 16 2 C -0.11 -1.55 2.72 -91.77 -0.25 -1.80 16 3 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 4 C -0.09 -1.13 4.01 -26.73 -0.11 -1.24 16 5 C -0.09 -0.87 5.10 -27.88 -0.14 -1.01 16 6 C -0.04 -0.45 5.13 -104.63 -0.54 -0.99 16 7 C -0.13 -1.21 9.70 -39.58 -0.38 -1.59 16 8 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 9 C -0.16 -1.53 10.03 -39.52 -0.40 -1.92 16 10 C 0.10 1.05 7.30 -39.42 -0.29 0.76 16 11 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 12 C -0.15 -1.59 9.68 -39.51 -0.38 -1.98 16 13 C 0.51 9.23 7.15 -10.98 -0.08 9.15 16 14 O -0.57 -11.77 15.92 5.56 0.09 -11.68 16 15 N -0.70 -12.96 5.28 -60.30 -0.32 -13.27 16 16 C 0.11 1.98 4.97 -4.05 -0.02 1.96 16 17 C 0.16 2.97 2.87 -67.93 -0.19 2.77 16 18 H 0.07 1.26 7.85 -51.93 -0.41 0.85 16 19 C -0.16 -2.59 9.18 37.16 0.34 -2.25 16 20 N -0.59 -13.43 2.29 -173.48 -0.40 -13.82 16 21 C 0.16 3.82 8.11 59.85 0.49 4.31 16 22 C -0.26 -6.43 9.34 -15.06 -0.14 -6.57 16 23 H 0.07 1.65 7.81 -52.48 -0.41 1.24 16 24 C 0.00 0.12 5.06 -17.43 -0.09 0.04 16 25 N -0.90 -24.10 10.67 55.49 0.59 -23.50 16 26 Si 0.90 20.46 29.58 -169.99 -5.03 15.43 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 30 H 0.06 0.84 7.57 -51.93 -0.39 0.44 16 31 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.03 7.95 -51.93 -0.41 0.61 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.70 6.51 -51.93 -0.34 0.37 16 36 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.41 8.04 7.32 -40.82 -0.30 7.75 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.12 7.84 -51.93 -0.41 0.72 16 44 H 0.05 0.87 6.66 -51.93 -0.35 0.52 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.03 0.75 7.40 -51.93 -0.38 0.37 16 48 H 0.04 1.05 7.21 -51.93 -0.37 0.67 16 49 H 0.00 -0.03 6.44 -51.93 -0.33 -0.36 16 50 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 406.19 15.07 6.12 6.12 Total: -1.00 -28.82 406.19 -9.39 -38.21 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.23 Total: 7.04 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.25 Total: -2.92 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.12 Total: -50.60 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.82 -9.39 -38.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725192715.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.897 kcal (2) G-P(sol) polarization free energy of solvation -28.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds