Wall clock time and date at job start Tue Mar 31 2020 20:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47650 * 2 1 4 4 C 1.53006 * 109.47157 * 240.00111 * 2 1 3 5 5 C 1.53003 * 109.46789 * 64.99899 * 4 2 1 6 6 C 1.50708 * 109.46910 * 180.02562 * 5 4 2 7 7 C 1.38262 * 119.98828 * 269.73026 * 6 5 4 8 8 C 1.38224 * 120.05267 * 179.72999 * 7 6 5 9 9 C 1.38220 * 120.01994 * 0.53785 * 8 7 6 10 10 C 1.38431 * 119.97900 * 359.73545 * 9 8 7 11 11 F 1.35094 * 120.02912 * 180.02562 * 10 9 8 12 12 C 1.38176 * 119.98355 * 90.00089 * 6 5 4 13 13 C 1.50697 * 109.47635 * 120.00415 * 2 1 3 14 14 O 1.21272 * 120.00577 * 119.99418 * 13 2 1 15 15 N 1.34785 * 119.99646 * 299.72171 * 13 2 1 16 16 C 1.46492 * 120.00159 * 180.27041 * 15 13 2 17 17 C 1.52994 * 109.47491 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47366 * 64.99642 * 17 16 15 19 19 C 1.52999 * 109.47580 * 185.00458 * 17 16 15 20 20 N 1.46505 * 109.46797 * 305.00433 * 17 16 15 21 21 C 1.46500 * 119.99654 * 299.99480 * 20 17 16 22 22 C 1.36931 * 120.00439 * 120.00145 * 20 17 16 23 23 H 1.08003 * 119.99985 * 20.35741 * 22 20 17 24 24 C 1.38818 * 120.00114 * 200.36294 * 22 20 17 25 25 N 1.31609 * 119.99999 * 14.99141 * 24 22 20 26 26 Si 1.86794 * 119.99950 * 194.99209 * 24 22 20 27 27 H 1.48505 * 109.47145 * 85.00100 * 26 24 22 28 28 H 1.48501 * 109.47233 * 205.00018 * 26 24 22 29 29 H 1.48503 * 109.47338 * 325.00175 * 26 24 22 30 30 H 1.09003 * 109.46492 * 300.00009 * 1 2 3 31 31 H 1.09003 * 109.47174 * 59.99512 * 1 2 3 32 32 H 1.08995 * 109.46958 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47220 * 184.99694 * 4 2 1 34 34 H 1.08999 * 109.46676 * 305.00384 * 4 2 1 35 35 H 1.08996 * 109.47072 * 299.99886 * 5 4 2 36 36 H 1.08999 * 109.47115 * 60.00754 * 5 4 2 37 37 H 1.08006 * 119.97412 * 359.97438 * 7 6 5 38 38 H 1.07992 * 119.99049 * 180.27303 * 8 7 6 39 39 H 1.08006 * 120.00890 * 179.75312 * 9 8 7 40 40 H 1.08000 * 120.01849 * 359.97438 * 12 6 5 41 41 H 0.97000 * 119.99862 * 0.27577 * 15 13 2 42 42 H 1.09002 * 109.47403 * 300.00802 * 16 15 13 43 43 H 1.08996 * 109.46940 * 59.99875 * 16 15 13 44 44 H 1.08998 * 109.47438 * 59.99227 * 19 17 16 45 45 H 1.09001 * 109.47527 * 179.97438 * 19 17 16 46 46 H 1.09006 * 109.46774 * 299.99599 * 19 17 16 47 47 H 1.09000 * 109.46949 * 95.12121 * 21 20 17 48 48 H 1.08999 * 109.47422 * 215.11552 * 21 20 17 49 49 H 1.09006 * 109.47527 * 335.11904 * 21 20 17 50 50 H 0.97004 * 120.00419 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6352 0.0690 -2.4953 6 6 2.1370 -0.6417 -3.7259 7 6 3.3883 -0.3448 -4.2335 8 6 3.8521 -0.9998 -5.3588 9 6 3.0607 -1.9446 -5.9844 10 6 1.8054 -2.2387 -5.4805 11 9 1.0312 -3.1624 -6.0909 12 6 1.3440 -1.5858 -4.3497 13 6 2.0324 -0.7105 1.2303 14 8 2.7296 -1.6965 1.1191 15 7 1.7115 -0.2467 2.4545 16 6 2.2047 -0.9338 3.6506 17 6 1.6989 -0.2098 4.8999 18 1 0.6129 -0.2873 4.9501 19 6 2.3142 -0.8510 6.1453 20 7 2.0852 1.2020 4.8360 21 6 3.5009 1.5713 4.7617 22 6 1.1230 2.1762 4.8459 23 1 0.1351 1.9557 5.2225 24 6 1.4174 3.4473 4.3718 25 7 2.5001 3.6462 3.6504 26 14 0.2769 4.8754 4.7578 27 1 0.6271 5.4440 6.0843 28 1 0.4250 5.9228 3.7156 29 1 -1.1280 4.3948 4.7805 30 1 -0.3632 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1263 -0.7994 -1.2057 34 1 1.6053 -1.7197 -1.2952 35 1 0.5489 0.1472 -2.5389 36 1 2.0699 1.0675 -2.4494 37 1 4.0055 0.3968 -3.7480 38 1 4.8315 -0.7702 -5.7518 39 1 3.4217 -2.4535 -6.8661 40 1 0.3650 -1.8148 -3.9554 41 1 1.1538 0.5419 2.5436 42 1 1.8419 -1.9617 3.6548 43 1 3.2947 -0.9335 3.6463 44 1 3.4002 -0.7735 6.0951 45 1 1.9541 -0.3349 7.0354 46 1 2.0267 -1.9014 6.1928 47 1 3.7840 1.7177 3.7194 48 1 3.6649 2.4955 5.3158 49 1 4.1073 0.7756 5.1947 50 1 2.7060 4.5344 3.3194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725192715.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:24 Heat of formation + Delta-G solvation = -72.545283 kcal Electronic energy + Delta-G solvation = -28984.555677 eV Core-core repulsion = 24925.443365 eV Total energy + Delta-G solvation = -4059.112312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.90372 -40.94231 -40.08093 -38.45563 -36.52687 -35.33121 -33.86043 -33.03698 -31.48469 -31.05901 -29.28718 -27.98666 -27.24192 -26.05706 -24.90483 -23.72006 -23.31419 -21.83720 -21.06623 -20.39254 -18.81945 -18.42912 -17.67490 -17.38151 -17.13044 -17.08218 -16.88780 -16.59609 -16.42829 -15.87821 -15.43939 -15.11286 -14.80730 -14.68005 -14.60025 -14.40711 -14.18680 -13.82791 -13.75823 -13.57008 -13.50823 -13.30971 -13.13205 -12.82822 -12.71416 -12.58850 -12.50304 -12.45170 -12.36812 -12.25365 -12.12530 -12.06389 -11.71175 -11.68825 -11.54317 -11.46370 -10.66511 -10.56169 -9.89281 -9.84488 -9.61072 -8.76994 -7.74306 -5.20535 0.19483 0.26684 1.51262 1.55309 1.60560 1.77404 2.43596 2.56089 2.65830 3.26043 3.38842 3.64977 3.66373 3.81561 3.85062 4.02061 4.04185 4.09778 4.19374 4.30331 4.36799 4.41098 4.46388 4.54475 4.61351 4.63011 4.72804 4.74403 4.84433 4.86902 4.94549 4.98097 5.02846 5.06901 5.09514 5.13501 5.17550 5.28504 5.31592 5.32542 5.39641 5.42906 5.50263 5.62004 5.67304 5.74350 5.77376 5.96991 6.37573 6.76660 7.21133 7.39166 7.92837 8.38287 9.27253 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.002389 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.702339 B =11719.117442 C =12576.042363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.080 4.080 5 C -0.078 4.078 6 C -0.056 4.056 7 C -0.135 4.135 8 C -0.089 4.089 9 C -0.165 4.165 10 C 0.076 3.924 11 F -0.151 7.151 12 C -0.161 4.161 13 C 0.507 3.493 14 O -0.596 6.596 15 N -0.702 5.702 16 C 0.113 3.887 17 C 0.157 3.843 18 H 0.073 0.927 19 C -0.150 4.150 20 N -0.601 5.601 21 C 0.182 3.818 22 C -0.257 4.257 23 H 0.073 0.927 24 C -0.042 4.042 25 N -0.927 5.927 26 Si 0.957 3.043 27 H -0.296 1.296 28 H -0.299 1.299 29 H -0.269 1.269 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.410 0.590 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.001 0.999 48 H 0.014 0.986 49 H 0.021 0.979 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -8.253 -14.573 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 H 0.116 0.884 4 C -0.118 4.118 5 C -0.115 4.115 6 C -0.056 4.056 7 C -0.153 4.153 8 C -0.106 4.106 9 C -0.184 4.184 10 C 0.057 3.943 11 F -0.130 7.130 12 C -0.180 4.180 13 C 0.295 3.705 14 O -0.479 6.479 15 N -0.352 5.352 16 C -0.013 4.013 17 C 0.050 3.950 18 H 0.092 0.908 19 C -0.209 4.209 20 N -0.325 5.325 21 C 0.037 3.963 22 C -0.387 4.387 23 H 0.091 0.909 24 C -0.238 4.238 25 N -0.574 5.574 26 Si 0.787 3.213 27 H -0.224 1.224 28 H -0.226 1.226 29 H -0.194 1.194 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.159 0.841 38 H 0.176 0.824 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.247 0.753 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.020 0.980 48 H 0.032 0.968 49 H 0.039 0.961 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.421 -8.828 -14.702 17.207 hybrid contribution -0.515 1.139 0.283 1.282 sum -1.936 -7.688 -14.418 16.454 Atomic orbital electron populations 1.21801 0.91319 1.02760 1.03759 1.21292 0.98950 1.00574 0.91754 0.88383 1.21212 1.00648 0.98522 0.91414 1.20718 1.02648 0.98633 0.89499 1.19882 0.94219 0.95416 0.96104 1.21482 0.95709 1.01104 0.96994 1.21340 1.00412 0.94214 0.94663 1.21406 0.93077 1.01127 1.02761 1.17973 0.90929 0.91010 0.94412 1.91465 1.74866 1.64147 1.82517 1.21205 1.02251 0.98623 0.95883 1.21188 0.79443 0.84066 0.85792 1.90602 1.40671 1.28909 1.87687 1.45950 1.52386 1.31634 1.05198 1.21821 0.97910 0.95569 0.86007 1.20818 0.98473 0.83498 0.92213 0.90835 1.22070 1.00699 1.00597 0.97532 1.44081 1.02139 1.00531 1.85717 1.20412 0.83698 0.94999 0.97214 1.19476 0.94136 0.90956 1.34159 0.90881 1.25524 0.99117 1.00460 0.98661 1.70241 1.28463 1.20999 1.37671 0.85439 0.79418 0.79967 0.76448 1.22414 1.22633 1.19357 0.92468 0.88985 0.92138 0.92856 0.92144 0.88814 0.89421 0.84059 0.82408 0.83235 0.84134 0.75329 0.91611 0.94392 0.93433 0.92731 0.90588 0.98030 0.96764 0.96055 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.85 71.98 0.64 -2.47 16 2 C -0.10 -2.87 2.72 -11.54 -0.03 -2.90 16 3 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 4 C -0.08 -1.98 4.01 30.60 0.12 -1.85 16 5 C -0.08 -1.45 5.10 29.85 0.15 -1.29 16 6 C -0.06 -1.09 5.13 -19.87 -0.10 -1.19 16 7 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 8 C -0.09 -1.37 10.04 22.26 0.22 -1.15 16 9 C -0.17 -2.84 10.03 22.31 0.22 -2.62 16 10 C 0.08 1.58 7.30 22.37 0.16 1.75 16 11 F -0.15 -3.42 17.27 44.97 0.78 -2.64 16 12 C -0.16 -3.25 9.68 22.31 0.22 -3.04 16 13 C 0.51 18.28 7.15 87.65 0.63 18.90 16 14 O -0.60 -25.05 15.92 -3.00 -0.05 -25.10 16 15 N -0.70 -25.91 5.28 -463.09 -2.45 -28.36 16 16 C 0.11 4.09 4.97 86.38 0.43 4.52 16 17 C 0.16 5.68 2.87 44.99 0.13 5.81 16 18 H 0.07 2.59 7.85 -2.39 -0.02 2.57 16 19 C -0.15 -4.58 9.18 71.98 0.66 -3.91 16 20 N -0.60 -26.90 2.29 -702.77 -1.61 -28.51 16 21 C 0.18 8.59 8.11 127.77 1.04 9.63 16 22 C -0.26 -12.55 9.34 84.04 0.79 -11.76 16 23 H 0.07 3.46 7.81 -2.91 -0.02 3.43 16 24 C -0.04 -2.12 5.06 84.87 0.43 -1.69 16 25 N -0.93 -50.32 10.67 21.65 0.23 -50.09 16 26 Si 0.96 41.92 29.58 68.60 2.03 43.95 16 27 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 29 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 30 H 0.06 1.39 7.57 -2.39 -0.02 1.37 16 31 H 0.09 1.57 6.57 -2.39 -0.02 1.56 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.52 7.95 -2.39 -0.02 1.50 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.46 6.51 -2.39 -0.02 1.44 16 36 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 37 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.41 15.88 7.32 -92.71 -0.68 15.20 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 44 H 0.05 1.49 6.66 -2.39 -0.02 1.47 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 47 H 0.00 0.07 7.40 -2.39 -0.02 0.06 16 48 H 0.01 0.71 7.21 -2.39 -0.02 0.70 16 49 H 0.02 0.89 6.44 -2.38 -0.02 0.87 16 50 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 Total: -1.00 -62.04 406.19 5.10 -56.94 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.25 Total: 29.25 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.92 Total: 4.55 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -3.82 Total: -106.95 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.05 Total: -25.10 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -62.04 5.10 -56.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725192715.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.603 kcal (2) G-P(sol) polarization free energy of solvation -62.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds