Wall clock time and date at job start Tue Mar 31 2020 19:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00313 * 2 1 4 4 C 1.52999 * 109.47342 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47026 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47067 * 180.02562 * 5 4 3 7 7 C 1.34261 * 125.75529 * 125.00212 * 6 5 4 8 8 C 1.38048 * 107.41592 * 179.97438 * 7 6 5 9 9 C 1.47426 * 126.41539 * 179.97438 * 8 7 6 10 10 O 1.21610 * 119.99934 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00460 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00210 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47053 * 324.99293 * 12 11 9 14 14 C 1.53000 * 109.47279 * 84.99816 * 12 11 9 15 15 C 1.53003 * 109.46899 * 204.99884 * 12 11 9 16 16 C 1.53944 * 113.74283 * 161.82001 * 15 12 11 17 17 N 1.47811 * 86.04078 * 222.08265 * 16 15 12 18 18 C 1.36931 * 134.46031 * 204.64177 * 17 16 15 19 19 H 1.07997 * 120.00253 * 179.86812 * 18 17 16 20 20 C 1.38816 * 119.99651 * 359.87126 * 18 17 16 21 21 N 1.31610 * 120.00211 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99645 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47211 * 60.00029 * 22 20 18 24 24 H 1.48500 * 109.47057 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47070 * 299.99893 * 22 20 18 26 26 C 1.47587 * 91.04564 * 24.55006 * 17 16 15 27 27 C 1.41294 * 107.17061 * 359.97438 * 8 7 6 28 28 N 1.30445 * 108.02534 * 359.97438 * 27 8 7 29 29 H 1.08993 * 109.47074 * 300.00688 * 1 2 3 30 30 H 1.09003 * 109.46586 * 60.00506 * 1 2 3 31 31 H 1.08999 * 109.46650 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47283 * 59.99192 * 3 2 1 33 33 H 1.08997 * 109.46945 * 299.99681 * 3 2 1 34 34 H 1.09001 * 109.46874 * 59.99728 * 4 3 2 35 35 H 1.08997 * 109.47071 * 299.99886 * 4 3 2 36 36 H 1.09001 * 109.47417 * 60.00182 * 5 4 3 37 37 H 1.09003 * 109.47490 * 299.99657 * 5 4 3 38 38 H 1.07995 * 126.29171 * 0.23504 * 7 6 5 39 39 H 0.97000 * 119.99308 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.46600 * 180.02562 * 14 12 11 41 41 H 1.08992 * 109.47280 * 300.06936 * 14 12 11 42 42 H 1.09005 * 109.46880 * 60.07708 * 14 12 11 43 43 H 1.09007 * 112.94625 * 293.41294 * 15 12 11 44 44 H 1.09001 * 113.76909 * 336.34862 * 16 15 12 45 45 H 1.09004 * 113.76855 * 107.74168 * 16 15 12 46 46 H 0.97002 * 119.99971 * 180.02562 * 21 20 18 47 47 H 1.09006 * 113.76300 * 221.15027 * 26 17 16 48 48 H 1.08994 * 113.86828 * 89.77167 * 26 17 16 49 49 H 1.07996 * 125.98516 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1578 2.5822 0.0000 6 7 5.6183 2.4666 0.0000 7 6 6.4496 3.0272 -0.8928 8 6 7.7363 2.6760 -0.5365 9 6 8.9750 3.0668 -1.2338 10 8 8.9189 3.7666 -2.2268 11 7 10.1697 2.6487 -0.7708 12 6 11.4006 3.0376 -1.4634 13 1 11.2149 3.0828 -2.5365 14 6 11.8535 4.4117 -0.9658 15 6 12.4940 2.0060 -1.1781 16 6 13.6663 2.0535 -2.1747 17 7 13.6113 0.5766 -2.1522 18 6 14.5154 -0.4208 -2.4028 19 1 14.2178 -1.4549 -2.3116 20 6 15.8146 -0.1026 -2.7740 21 7 16.1772 1.1577 -2.8855 22 14 17.0483 -1.4632 -3.1151 23 1 16.5543 -2.3113 -4.2296 24 1 18.3543 -0.8645 -3.4908 25 1 17.2169 -2.2954 -1.8969 26 6 12.1919 0.6086 -1.7491 27 6 7.6437 1.8718 0.6215 28 7 6.3821 1.7547 0.9318 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6888 1.8462 -0.8900 34 1 3.8575 0.6434 -0.8891 35 1 3.8568 0.6438 0.8908 36 1 3.8359 3.1238 0.8895 37 1 3.8366 3.1227 -0.8905 38 1 6.1646 3.6435 -1.7325 39 1 10.2144 2.0909 0.0215 40 1 12.7692 4.7011 -1.4815 41 1 11.0742 5.1463 -1.1679 42 1 12.0406 4.3660 0.1072 43 1 12.8060 1.9952 -0.1337 44 1 13.4052 2.4882 -3.1396 45 1 14.5834 2.4666 -1.7548 46 1 17.0850 1.3800 -3.1453 47 1 11.9341 -0.1299 -0.9899 48 1 11.4954 0.6177 -2.5874 49 1 8.4723 1.4320 1.1566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725272136.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:56 Heat of formation + Delta-G solvation = 43.972869 kcal Electronic energy + Delta-G solvation = -28012.093138 eV Core-core repulsion = 23977.953394 eV Total energy + Delta-G solvation = -4034.139744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.58029 -39.37957 -38.54479 -37.82150 -35.26130 -34.66397 -32.18004 -31.64788 -30.88458 -29.75353 -27.58970 -27.40427 -25.77612 -24.75072 -24.05214 -22.90970 -22.69675 -21.09740 -20.78530 -19.98027 -19.09418 -17.96657 -16.93996 -16.81578 -16.69726 -16.11652 -15.85573 -15.80842 -15.16776 -14.90028 -14.73511 -14.50742 -14.24364 -13.99797 -13.82620 -13.49906 -13.09892 -13.03000 -12.82952 -12.74905 -12.35921 -12.22271 -11.96943 -11.71216 -11.66990 -11.51021 -11.34715 -11.17062 -11.12743 -10.82482 -10.62246 -10.29492 -10.25236 -9.98145 -9.84653 -9.75596 -9.55624 -9.34600 -8.95658 -8.74457 -8.62216 -6.81608 -5.71592 -3.03245 1.37048 1.97200 2.05945 3.15450 3.43102 3.46563 3.47671 3.48443 3.58645 4.04107 4.35327 4.40543 4.50165 4.53939 4.56132 4.66301 4.71204 4.81080 4.82776 4.87522 5.03153 5.15400 5.18973 5.20259 5.26792 5.43571 5.47554 5.57008 5.61490 5.62146 5.75863 5.90707 6.09226 6.15636 6.20642 6.38181 6.44612 6.51213 6.53758 6.59581 6.68432 6.72256 6.92088 7.28534 7.30233 7.43260 7.61513 7.81675 8.03700 8.50658 9.10053 9.76290 10.66333 11.45649 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.001803 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.685744 B =15526.657475 C =16645.450547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.134 4.134 5 C 0.136 3.864 6 N -0.364 5.364 7 C 0.125 3.875 8 C -0.286 4.286 9 C 0.593 3.407 10 O -0.555 6.555 11 N -0.714 5.714 12 C 0.153 3.847 13 H 0.087 0.913 14 C -0.157 4.157 15 C -0.147 4.147 16 C 0.175 3.825 17 N -0.613 5.613 18 C -0.223 4.223 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.126 3.874 27 C 0.083 3.917 28 N -0.295 5.295 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.187 0.813 39 H 0.397 0.603 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.028 0.972 45 H 0.074 0.926 46 H 0.254 0.746 47 H 0.040 0.960 48 H 0.032 0.968 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.712 5.781 8.855 31.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.013 4.013 4 C -0.172 4.172 5 C 0.015 3.985 6 N -0.143 5.143 7 C -0.026 4.026 8 C -0.301 4.301 9 C 0.380 3.620 10 O -0.434 6.434 11 N -0.363 5.363 12 C 0.048 3.952 13 H 0.105 0.895 14 C -0.216 4.216 15 C -0.167 4.167 16 C 0.050 3.950 17 N -0.339 5.339 18 C -0.350 4.350 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.000 4.000 27 C -0.105 4.105 28 N -0.115 5.115 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.204 0.796 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.046 0.954 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.050 0.950 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -30.292 5.481 8.873 32.038 hybrid contribution 1.037 -0.448 -0.526 1.246 sum -29.255 5.033 8.347 30.837 Atomic orbital electron populations 1.22773 0.80570 1.03089 1.00074 1.87898 1.20039 1.27515 1.95434 1.22376 0.93090 0.85243 1.00550 1.21757 0.93462 0.96427 1.05535 1.21631 0.74106 0.98274 1.04501 1.48445 1.06666 1.38424 1.20790 1.22974 0.89436 0.95936 0.94221 1.20373 0.93850 1.12805 1.03103 1.17210 0.82405 0.79260 0.83158 1.90761 1.87332 1.38978 1.26347 1.45890 1.05688 1.53257 1.31507 1.21087 0.82503 0.94032 0.97568 0.89475 1.22109 1.01581 0.96697 1.01192 1.23846 0.96735 0.94761 1.01328 1.22230 0.94114 0.85287 0.93410 1.45981 1.04990 1.02288 1.80603 1.18980 0.89722 0.86632 1.39714 0.90404 1.24766 0.97256 0.96399 1.02033 1.69795 1.18169 1.15346 1.53579 0.86217 0.80661 0.80863 0.78112 1.21265 1.21566 1.21132 1.22532 0.88239 0.93523 0.95745 1.24125 0.94821 0.96449 0.95074 1.77159 1.03597 1.17365 1.13345 0.93910 0.93918 0.89386 0.92838 0.92923 0.90188 0.89201 0.89087 0.88045 0.79588 0.76967 0.91195 0.92822 0.92816 0.89356 0.95427 0.90742 0.93629 0.94175 0.94992 0.79234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.01 10.70 -35.23 -0.38 -3.39 16 3 C 0.06 0.33 5.94 37.16 0.22 0.55 16 4 C -0.13 -0.83 5.76 -26.73 -0.15 -0.99 16 5 C 0.14 0.70 6.49 -4.04 -0.03 0.68 16 6 N -0.36 -3.26 3.65 -60.81 -0.22 -3.48 16 7 C 0.13 1.23 11.25 -16.56 -0.19 1.04 16 8 C -0.29 -3.36 6.13 -105.06 -0.64 -4.00 16 9 C 0.59 8.52 7.78 -12.52 -0.10 8.43 16 10 O -0.55 -9.88 16.56 5.27 0.09 -9.80 16 11 N -0.71 -9.52 4.94 -54.88 -0.27 -9.79 16 12 C 0.15 2.39 2.29 -67.93 -0.16 2.24 16 13 H 0.09 1.58 7.48 -51.93 -0.39 1.19 16 14 C -0.16 -2.25 9.44 37.16 0.35 -1.90 16 15 C -0.15 -2.64 3.35 -89.69 -0.30 -2.94 16 16 C 0.18 4.10 6.98 -2.84 -0.02 4.08 16 17 N -0.61 -15.89 3.70 -177.68 -0.66 -16.55 16 18 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.54 11.39 55.49 0.63 -26.91 16 22 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.13 2.57 8.38 -2.96 -0.02 2.55 16 27 C 0.08 0.86 11.50 -16.98 -0.20 0.67 16 28 N -0.30 -3.22 12.33 30.86 0.38 -2.84 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.26 8.06 -51.93 -0.42 -0.16 16 38 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.40 4.30 7.56 -40.82 -0.31 3.99 16 40 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.53 8.14 -51.92 -0.42 1.10 16 44 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 45 H 0.07 1.91 7.17 -51.93 -0.37 1.54 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 49 H 0.19 1.44 7.50 -52.49 -0.39 1.04 16 LS Contribution 410.52 15.07 6.19 6.19 Total: -1.00 -36.46 410.52 -7.82 -44.28 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.18 Total: 0.09 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.38 Total: 4.81 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.14 Total: -59.57 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.29 Total: -13.19 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.46 -7.82 -44.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725272136.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.254 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds