Wall clock time and date at job start Tue Mar 31 2020 19:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00313 * 2 1 4 4 C 1.52999 * 109.47342 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47026 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47067 * 180.02562 * 5 4 3 7 7 C 1.34261 * 125.75529 * 125.00212 * 6 5 4 8 8 C 1.38048 * 107.41592 * 179.97438 * 7 6 5 9 9 C 1.47426 * 126.41539 * 179.97438 * 8 7 6 10 10 O 1.21610 * 119.99934 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00460 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00210 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47053 * 324.99293 * 12 11 9 14 14 C 1.53000 * 109.47279 * 84.99816 * 12 11 9 15 15 C 1.53003 * 109.46899 * 204.99884 * 12 11 9 16 16 C 1.53944 * 113.74283 * 161.82001 * 15 12 11 17 17 N 1.47811 * 86.04078 * 222.08265 * 16 15 12 18 18 C 1.36931 * 134.46031 * 204.64177 * 17 16 15 19 19 H 1.07997 * 120.00253 * 179.86812 * 18 17 16 20 20 C 1.38816 * 119.99651 * 359.87126 * 18 17 16 21 21 N 1.31610 * 120.00211 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99645 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47211 * 60.00029 * 22 20 18 24 24 H 1.48500 * 109.47057 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47070 * 299.99893 * 22 20 18 26 26 C 1.47587 * 91.04564 * 24.55006 * 17 16 15 27 27 C 1.41294 * 107.17061 * 359.97438 * 8 7 6 28 28 N 1.30445 * 108.02534 * 359.97438 * 27 8 7 29 29 H 1.08993 * 109.47074 * 300.00688 * 1 2 3 30 30 H 1.09003 * 109.46586 * 60.00506 * 1 2 3 31 31 H 1.08999 * 109.46650 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47283 * 59.99192 * 3 2 1 33 33 H 1.08997 * 109.46945 * 299.99681 * 3 2 1 34 34 H 1.09001 * 109.46874 * 59.99728 * 4 3 2 35 35 H 1.08997 * 109.47071 * 299.99886 * 4 3 2 36 36 H 1.09001 * 109.47417 * 60.00182 * 5 4 3 37 37 H 1.09003 * 109.47490 * 299.99657 * 5 4 3 38 38 H 1.07995 * 126.29171 * 0.23504 * 7 6 5 39 39 H 0.97000 * 119.99308 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.46600 * 180.02562 * 14 12 11 41 41 H 1.08992 * 109.47280 * 300.06936 * 14 12 11 42 42 H 1.09005 * 109.46880 * 60.07708 * 14 12 11 43 43 H 1.09007 * 112.94625 * 293.41294 * 15 12 11 44 44 H 1.09001 * 113.76909 * 336.34862 * 16 15 12 45 45 H 1.09004 * 113.76855 * 107.74168 * 16 15 12 46 46 H 0.97002 * 119.99971 * 180.02562 * 21 20 18 47 47 H 1.09006 * 113.76300 * 221.15027 * 26 17 16 48 48 H 1.08994 * 113.86828 * 89.77167 * 26 17 16 49 49 H 1.07996 * 125.98516 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1578 2.5822 0.0000 6 7 5.6183 2.4666 0.0000 7 6 6.4496 3.0272 -0.8928 8 6 7.7363 2.6760 -0.5365 9 6 8.9750 3.0668 -1.2338 10 8 8.9189 3.7666 -2.2268 11 7 10.1697 2.6487 -0.7708 12 6 11.4006 3.0376 -1.4634 13 1 11.2149 3.0828 -2.5365 14 6 11.8535 4.4117 -0.9658 15 6 12.4940 2.0060 -1.1781 16 6 13.6663 2.0535 -2.1747 17 7 13.6113 0.5766 -2.1522 18 6 14.5154 -0.4208 -2.4028 19 1 14.2178 -1.4549 -2.3116 20 6 15.8146 -0.1026 -2.7740 21 7 16.1772 1.1577 -2.8855 22 14 17.0483 -1.4632 -3.1151 23 1 16.5543 -2.3113 -4.2296 24 1 18.3543 -0.8645 -3.4908 25 1 17.2169 -2.2954 -1.8969 26 6 12.1919 0.6086 -1.7491 27 6 7.6437 1.8718 0.6215 28 7 6.3821 1.7547 0.9318 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6888 1.8462 -0.8900 34 1 3.8575 0.6434 -0.8891 35 1 3.8568 0.6438 0.8908 36 1 3.8359 3.1238 0.8895 37 1 3.8366 3.1227 -0.8905 38 1 6.1646 3.6435 -1.7325 39 1 10.2144 2.0909 0.0215 40 1 12.7692 4.7011 -1.4815 41 1 11.0742 5.1463 -1.1679 42 1 12.0406 4.3660 0.1072 43 1 12.8060 1.9952 -0.1337 44 1 13.4052 2.4882 -3.1396 45 1 14.5834 2.4666 -1.7548 46 1 17.0850 1.3800 -3.1453 47 1 11.9341 -0.1299 -0.9899 48 1 11.4954 0.6177 -2.5874 49 1 8.4723 1.4320 1.1566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725272136.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:55 Heat of formation + Delta-G solvation = 18.352050 kcal Electronic energy + Delta-G solvation = -28013.204140 eV Core-core repulsion = 23977.953394 eV Total energy + Delta-G solvation = -4035.250746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.35128 -40.67259 -39.38763 -38.96632 -36.07454 -35.80692 -34.10997 -32.47046 -31.94006 -30.72598 -29.28318 -28.02572 -26.61462 -26.17578 -25.65388 -24.07283 -23.25689 -22.34200 -21.62598 -21.12383 -20.49984 -18.90325 -18.70209 -17.45702 -17.24401 -17.16285 -16.88276 -16.75109 -16.44529 -15.87049 -15.79542 -15.68540 -15.28699 -15.18907 -14.91528 -14.74928 -14.58489 -13.99648 -13.76091 -13.38890 -13.26112 -13.22892 -13.19476 -13.03738 -12.90729 -12.74568 -12.62407 -12.39390 -12.25812 -12.08729 -11.99214 -11.84625 -11.74219 -11.50215 -11.17474 -10.83357 -10.77174 -10.64405 -10.56461 -10.03843 -9.58726 -8.88995 -7.88007 -5.21222 0.57584 1.21674 1.36662 1.46430 1.49986 1.56094 2.36364 2.49682 2.56389 2.76737 3.32250 3.42990 3.51014 3.77608 3.82264 3.88632 4.00963 4.04171 4.11488 4.19317 4.24901 4.34235 4.36824 4.44812 4.49731 4.51132 4.55179 4.56789 4.63380 4.77786 4.82137 4.86305 4.91060 4.93132 4.97378 5.01391 5.09867 5.18549 5.28307 5.36641 5.45244 5.57026 5.65106 5.71161 5.88119 5.97003 6.21945 6.53852 6.77209 6.94612 7.42390 7.63330 8.59784 9.28767 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.001803 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.685744 B =15526.657475 C =16645.450547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.064 3.936 4 C -0.126 4.126 5 C 0.130 3.870 6 N -0.358 5.358 7 C 0.134 3.866 8 C -0.312 4.312 9 C 0.594 3.406 10 O -0.595 6.595 11 N -0.705 5.705 12 C 0.165 3.835 13 H 0.060 0.940 14 C -0.151 4.151 15 C -0.108 4.108 16 C 0.170 3.830 17 N -0.644 5.644 18 C -0.238 4.238 19 H 0.082 0.918 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.979 3.021 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.274 1.274 26 C 0.127 3.873 27 C 0.086 3.914 28 N -0.319 5.319 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.134 0.866 38 H 0.207 0.793 39 H 0.411 0.589 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.011 0.989 45 H 0.047 0.953 46 H 0.249 0.751 47 H 0.061 0.939 48 H 0.031 0.969 49 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.711 5.705 10.099 33.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.013 4.013 4 C -0.164 4.164 5 C 0.010 3.990 6 N -0.137 5.137 7 C -0.019 4.019 8 C -0.327 4.327 9 C 0.384 3.616 10 O -0.477 6.477 11 N -0.355 5.355 12 C 0.059 3.941 13 H 0.078 0.922 14 C -0.209 4.209 15 C -0.128 4.128 16 C 0.044 3.956 17 N -0.370 5.370 18 C -0.367 4.367 19 H 0.100 0.900 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.807 3.193 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.200 1.200 26 C 0.002 3.998 27 C -0.101 4.101 28 N -0.139 5.139 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.224 0.776 39 H 0.248 0.752 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.124 0.876 44 H 0.029 0.971 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.048 0.952 49 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -32.353 5.375 10.168 34.337 hybrid contribution 1.516 -0.435 -0.924 1.828 sum -30.838 4.940 9.244 32.570 Atomic orbital electron populations 1.22919 0.79195 1.03708 1.01147 1.87846 1.21728 1.29164 1.95701 1.22470 0.91936 0.84662 1.02209 1.21641 0.94627 0.96670 1.03468 1.22001 0.71924 0.98015 1.07023 1.48738 1.07856 1.37247 1.19814 1.23319 0.89094 0.95157 0.94297 1.20223 0.93349 1.14878 1.04267 1.17526 0.83118 0.78415 0.82589 1.90739 1.87871 1.40912 1.28198 1.45672 1.04711 1.53401 1.31708 1.20716 0.82764 0.94096 0.96484 0.92161 1.22038 1.01113 0.95482 1.02278 1.23445 0.94880 0.93892 1.00554 1.22143 0.95157 0.84243 0.94036 1.46413 1.07090 1.02814 1.80695 1.19403 0.90628 0.87646 1.39004 0.90007 1.25620 0.99172 0.98666 1.02512 1.69990 1.18134 1.17221 1.54785 0.85158 0.77839 0.78145 0.78206 1.20706 1.21952 1.19963 1.22669 0.85567 0.95432 0.96082 1.24467 0.95337 0.95768 0.94550 1.77135 1.03989 1.18300 1.14435 0.92824 0.92797 0.89156 0.91312 0.90992 0.91936 0.91551 0.87349 0.84776 0.77596 0.75211 0.91926 0.92892 0.90816 0.87570 0.97107 0.93468 0.94248 0.92052 0.95169 0.77119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -6.15 10.70 -148.98 -1.59 -7.74 16 3 C 0.06 0.53 5.94 71.98 0.43 0.96 16 4 C -0.13 -1.41 5.76 30.59 0.18 -1.23 16 5 C 0.13 1.00 6.49 86.38 0.56 1.56 16 6 N -0.36 -5.67 3.65 -346.29 -1.26 -6.93 16 7 C 0.13 2.36 11.25 84.28 0.95 3.31 16 8 C -0.31 -6.84 6.13 -20.15 -0.12 -6.97 16 9 C 0.59 16.49 7.78 86.66 0.67 17.17 16 10 O -0.59 -21.03 16.56 -4.06 -0.07 -21.10 16 11 N -0.70 -17.73 4.94 -445.80 -2.20 -19.93 16 12 C 0.16 5.06 2.29 44.99 0.10 5.16 16 13 H 0.06 2.22 7.48 -2.38 -0.02 2.20 16 14 C -0.15 -4.16 9.44 71.98 0.68 -3.48 16 15 C -0.11 -3.80 3.35 -10.13 -0.03 -3.84 16 16 C 0.17 8.15 6.98 86.44 0.60 8.75 16 17 N -0.64 -33.64 3.70 -716.04 -2.65 -36.30 16 18 C -0.24 -13.68 10.70 84.04 0.90 -12.78 16 19 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 20 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 21 N -0.95 -58.27 11.39 21.65 0.25 -58.02 16 22 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 26 C 0.13 5.10 8.38 86.48 0.72 5.83 16 27 C 0.09 1.63 11.50 85.65 0.99 2.62 16 28 N -0.32 -6.44 12.33 -56.28 -0.69 -7.14 16 29 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.13 0.18 8.06 -2.39 -0.02 0.17 16 38 H 0.21 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.41 7.92 7.56 -92.71 -0.70 7.22 16 40 H 0.06 1.81 8.09 -2.39 -0.02 1.80 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 44 H 0.01 0.56 8.03 -2.39 -0.02 0.54 16 45 H 0.05 2.50 7.17 -2.39 -0.02 2.48 16 46 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 47 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 48 H 0.03 1.25 8.10 -2.39 -0.02 1.23 16 49 H 0.21 2.70 7.50 -2.91 -0.02 2.68 16 Total: -1.00 -80.77 410.52 2.38 -78.39 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.24 Total: 15.20 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 8.34 Total: 15.11 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -6.56 Total: -128.31 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.66 Total: -28.84 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -80.77 2.38 -78.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725272136.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.741 kcal (2) G-P(sol) polarization free energy of solvation -80.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds