Wall clock time and date at job start Tue Mar 31 2020 20:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00422 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00022 * 180.02562 * 7 6 5 10 10 H 1.09003 * 109.47171 * 59.99555 * 9 7 6 11 11 C 1.53005 * 109.46916 * 299.99743 * 9 7 6 12 12 C 1.52994 * 109.47406 * 180.02562 * 9 7 6 13 13 C 1.52992 * 109.47422 * 184.99898 * 12 9 7 14 14 C 1.50699 * 109.47339 * 179.97438 * 13 12 9 15 15 C 1.38270 * 119.98711 * 269.72498 * 14 13 12 16 16 C 1.38228 * 120.05129 * 179.72327 * 15 14 13 17 17 C 1.38223 * 120.02276 * 0.55294 * 16 15 14 18 18 C 1.38434 * 119.97697 * 359.72177 * 17 16 15 19 19 F 1.35104 * 120.02935 * 180.02562 * 18 17 16 20 20 C 1.38178 * 119.99003 * 89.99924 * 14 13 12 21 21 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 22 22 C 1.36931 * 119.99788 * 274.99780 * 21 2 1 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 2 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 2 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 32 32 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 33 33 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 34 34 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 35 35 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 36 36 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 37 37 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.46569 * 60.00419 * 11 9 7 39 39 H 1.08998 * 109.47356 * 179.97438 * 11 9 7 40 40 H 1.08994 * 109.47525 * 300.00180 * 11 9 7 41 41 H 1.09005 * 109.46946 * 304.99853 * 12 9 7 42 42 H 1.09004 * 109.47544 * 64.99670 * 12 9 7 43 43 H 1.09001 * 109.47347 * 299.99556 * 13 12 9 44 44 H 1.09004 * 109.47197 * 59.99895 * 13 12 9 45 45 H 1.07997 * 119.97633 * 359.97438 * 15 14 13 46 46 H 1.07992 * 119.98821 * 180.27483 * 16 15 14 47 47 H 1.08000 * 120.00951 * 179.74474 * 17 16 15 48 48 H 1.08006 * 120.00773 * 359.97438 * 20 14 13 49 49 H 0.97000 * 119.99792 * 94.99575 * 21 2 1 50 50 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 7 4.0532 -1.3037 -2.5100 7 6 5.3740 -1.3390 -2.7756 8 8 6.1583 -0.7991 -2.0245 9 6 5.8763 -2.0485 -4.0067 10 1 5.4414 -1.5885 -4.8941 11 6 5.4718 -3.5229 -3.9463 12 6 7.4011 -1.9408 -4.0710 13 6 7.9007 -2.5515 -5.3818 14 6 9.4025 -2.4448 -5.4454 15 6 9.9928 -1.3314 -6.0145 16 6 11.3702 -1.2295 -6.0684 17 6 12.1592 -2.2461 -5.5637 18 6 11.5693 -3.3639 -4.9989 19 9 12.3395 -4.3580 -4.5048 20 6 10.1893 -3.4622 -4.9403 21 7 2.0183 -0.6906 1.1963 22 6 2.1491 -0.0075 2.3757 23 1 1.8919 1.0404 2.4243 24 6 2.6062 -0.6633 3.5106 25 7 2.7268 -0.0080 4.6457 26 14 3.0504 -2.4758 3.4268 27 1 4.4848 -2.6179 3.0695 28 1 2.8044 -3.1073 4.7481 29 1 2.2151 -3.1430 2.3961 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5139 -0.8901 33 1 1.7516 -1.7716 -1.2055 34 1 1.6055 -0.2618 -2.1369 35 1 3.8533 0.4368 -1.3573 36 1 3.9994 -1.0730 -0.4258 37 1 3.4258 -1.7352 -3.1109 38 1 4.3855 -3.6000 -3.9003 39 1 5.8347 -4.0360 -4.8369 40 1 5.9066 -3.9829 -3.0590 41 1 7.6935 -0.8917 -4.0243 42 1 7.8392 -2.4779 -3.2297 43 1 7.6084 -3.6005 -5.4286 44 1 7.4627 -2.0144 -6.2231 45 1 9.3771 -0.5388 -6.4134 46 1 11.8302 -0.3575 -6.5090 47 1 13.2354 -2.1682 -5.6097 48 1 9.7279 -4.3337 -4.4995 49 1 2.2489 -1.6318 1.1527 50 1 3.0466 -0.4660 5.4386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731739537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:15 Heat of formation + Delta-G solvation = -74.042318 kcal Electronic energy + Delta-G solvation = -27907.166095 eV Core-core repulsion = 23847.988867 eV Total energy + Delta-G solvation = -4059.177228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.19973 -40.07709 -39.43634 -36.89494 -35.80761 -34.49183 -32.74028 -32.14243 -30.91933 -29.85252 -28.83398 -28.06604 -25.67268 -23.98264 -23.18596 -22.97900 -22.08623 -21.18778 -20.27743 -19.59466 -17.84613 -17.55667 -16.85626 -16.76902 -16.51620 -15.98128 -15.86195 -15.69962 -15.25621 -14.67963 -14.36537 -14.14094 -14.05383 -13.92128 -13.71790 -13.43804 -13.15844 -12.94399 -12.91971 -12.61051 -12.52094 -12.21947 -12.19671 -11.96071 -11.88777 -11.77864 -11.52644 -11.22182 -11.11937 -11.01582 -10.92619 -10.78240 -10.65303 -10.39990 -10.04844 -9.63540 -9.55979 -9.31468 -9.01283 -8.95432 -8.87833 -7.25618 -5.74325 -3.09843 0.78574 0.83034 2.70930 3.13892 3.28959 3.38825 3.42600 3.47802 3.86639 4.22056 4.34747 4.52581 4.59527 4.61599 4.65781 4.71108 4.82148 4.91945 5.02264 5.10437 5.13019 5.16332 5.21294 5.28490 5.45603 5.47662 5.52604 5.55728 5.60645 5.63047 5.68598 5.69963 5.74864 5.88428 5.95112 5.96218 6.06551 6.08293 6.16222 6.23390 6.26539 6.36755 6.48312 6.52899 6.59763 6.77735 6.97169 7.56967 8.01477 8.31090 8.44587 9.22787 9.95388 10.14508 11.44145 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.002006 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.750334 B =13956.729486 C =15013.089731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.179 3.821 3 H 0.058 0.942 4 C -0.135 4.135 5 C 0.120 3.880 6 N -0.730 5.730 7 C 0.510 3.490 8 O -0.535 6.535 9 C -0.110 4.110 10 H 0.097 0.903 11 C -0.148 4.148 12 C -0.096 4.096 13 C -0.084 4.084 14 C -0.049 4.049 15 C -0.127 4.127 16 C -0.088 4.088 17 C -0.161 4.161 18 C 0.100 3.900 19 F -0.141 7.141 20 C -0.152 4.152 21 N -0.748 5.748 22 C -0.241 4.241 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.882 3.118 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.396 0.604 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.135 0.865 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.865 -6.647 -29.062 31.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.076 0.924 4 C -0.174 4.174 5 C -0.003 4.003 6 N -0.382 5.382 7 C 0.295 3.705 8 O -0.411 6.411 9 C -0.131 4.131 10 H 0.115 0.885 11 C -0.205 4.205 12 C -0.134 4.134 13 C -0.121 4.121 14 C -0.049 4.049 15 C -0.146 4.146 16 C -0.106 4.106 17 C -0.180 4.180 18 C 0.080 3.920 19 F -0.120 7.120 20 C -0.170 4.170 21 N -0.391 5.391 22 C -0.371 4.371 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.712 3.288 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.229 0.771 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.153 0.847 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.471 -6.099 -28.281 31.122 hybrid contribution 0.129 -1.714 0.017 1.719 sum 11.600 -7.813 -28.264 31.535 Atomic orbital electron populations 1.22394 0.98651 1.00822 1.00506 1.20129 0.92036 0.95894 0.85016 0.92383 1.22102 0.94028 1.01642 0.99628 1.21446 0.94268 0.97525 0.87073 1.46143 1.07368 1.57165 1.27480 1.20597 0.82389 0.80348 0.87167 1.90748 1.55252 1.45501 1.49607 1.21324 0.97595 0.97219 0.96984 0.88527 1.21854 1.01754 0.93875 1.03026 1.21387 0.92609 1.02608 0.96763 1.20749 0.90099 1.02507 0.98730 1.19747 0.95973 0.93266 0.95898 1.21160 0.94885 0.97967 1.00545 1.21022 0.93574 0.98025 0.98015 1.21155 1.01107 0.93865 1.01885 1.17724 0.88874 0.86706 0.98655 1.91508 1.75189 1.59766 1.85490 1.21067 0.91667 1.01098 1.03204 1.42821 1.79769 1.09287 1.07235 1.19056 1.36977 0.95464 0.85632 0.89182 1.24660 1.01490 0.97380 0.95565 1.69693 1.52791 1.35565 1.00127 0.86590 0.78558 0.86908 0.76701 1.21019 1.21815 1.20445 0.93667 0.92242 0.94248 0.91794 0.91462 0.91450 0.90395 0.77065 0.92053 0.91273 0.91858 0.90616 0.90863 0.90292 0.90381 0.85242 0.84974 0.84882 0.84733 0.80730 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.49 37.16 0.35 -2.35 16 2 C 0.18 3.24 2.89 -67.93 -0.20 3.05 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C -0.14 -1.87 4.87 -26.73 -0.13 -2.00 16 5 C 0.12 1.84 5.56 -4.04 -0.02 1.81 16 6 N -0.73 -8.72 5.45 -60.29 -0.33 -9.04 16 7 C 0.51 6.73 7.15 -10.98 -0.08 6.65 16 8 O -0.53 -9.79 15.92 5.56 0.09 -9.70 16 9 C -0.11 -0.93 2.73 -91.77 -0.25 -1.18 16 10 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 11 C -0.15 -1.01 8.84 37.16 0.33 -0.68 16 12 C -0.10 -0.86 4.01 -26.74 -0.11 -0.97 16 13 C -0.08 -0.53 5.10 -27.89 -0.14 -0.67 16 14 C -0.05 -0.38 5.13 -104.63 -0.54 -0.92 16 15 C -0.13 -0.91 9.70 -39.57 -0.38 -1.30 16 16 C -0.09 -0.61 10.04 -39.59 -0.40 -1.01 16 17 C -0.16 -1.28 10.03 -39.51 -0.40 -1.68 16 18 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 19 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 20 C -0.15 -1.32 9.68 -39.51 -0.38 -1.70 16 21 N -0.75 -17.20 4.38 -53.42 -0.23 -17.43 16 22 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 23 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -29.66 13.97 55.49 0.78 -28.88 16 26 Si 0.88 22.48 27.74 -169.99 -4.72 17.77 16 27 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 29 H -0.28 -6.61 6.51 56.52 0.37 -6.24 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.48 7.75 -51.93 -0.40 1.08 16 37 H 0.40 3.34 7.89 -40.82 -0.32 3.02 16 38 H 0.06 0.37 7.56 -51.93 -0.39 -0.03 16 39 H 0.07 0.34 6.57 -51.93 -0.34 0.00 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.79 7.95 -51.93 -0.41 0.38 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.42 6.51 -51.93 -0.34 0.08 16 44 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 45 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 46 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 47 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 49 H 0.36 8.23 5.66 -40.82 -0.23 8.00 16 50 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 411.82 15.07 6.21 6.21 Total: -1.00 -34.95 411.82 -9.42 -44.37 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.37 Total: 7.33 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -2.88 Total: -9.16 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.21 Total: -55.36 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.72 Total: 17.77 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.95 -9.42 -44.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731739537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.674 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds