Wall clock time and date at job start Tue Mar 31 2020 20:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00422 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00022 * 180.02562 * 7 6 5 10 10 H 1.09003 * 109.47171 * 59.99555 * 9 7 6 11 11 C 1.53005 * 109.46916 * 299.99743 * 9 7 6 12 12 C 1.52994 * 109.47406 * 180.02562 * 9 7 6 13 13 C 1.52992 * 109.47422 * 184.99898 * 12 9 7 14 14 C 1.50699 * 109.47339 * 179.97438 * 13 12 9 15 15 C 1.38270 * 119.98711 * 269.72498 * 14 13 12 16 16 C 1.38228 * 120.05129 * 179.72327 * 15 14 13 17 17 C 1.38223 * 120.02276 * 0.55294 * 16 15 14 18 18 C 1.38434 * 119.97697 * 359.72177 * 17 16 15 19 19 F 1.35104 * 120.02935 * 180.02562 * 18 17 16 20 20 C 1.38178 * 119.99003 * 89.99924 * 14 13 12 21 21 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 22 22 C 1.36931 * 119.99788 * 274.99780 * 21 2 1 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 2 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 2 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 32 32 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 33 33 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 34 34 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 35 35 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 36 36 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 37 37 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.46569 * 60.00419 * 11 9 7 39 39 H 1.08998 * 109.47356 * 179.97438 * 11 9 7 40 40 H 1.08994 * 109.47525 * 300.00180 * 11 9 7 41 41 H 1.09005 * 109.46946 * 304.99853 * 12 9 7 42 42 H 1.09004 * 109.47544 * 64.99670 * 12 9 7 43 43 H 1.09001 * 109.47347 * 299.99556 * 13 12 9 44 44 H 1.09004 * 109.47197 * 59.99895 * 13 12 9 45 45 H 1.07997 * 119.97633 * 359.97438 * 15 14 13 46 46 H 1.07992 * 119.98821 * 180.27483 * 16 15 14 47 47 H 1.08000 * 120.00951 * 179.74474 * 17 16 15 48 48 H 1.08006 * 120.00773 * 359.97438 * 20 14 13 49 49 H 0.97000 * 119.99792 * 94.99575 * 21 2 1 50 50 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 7 4.0532 -1.3037 -2.5100 7 6 5.3740 -1.3390 -2.7756 8 8 6.1583 -0.7991 -2.0245 9 6 5.8763 -2.0485 -4.0067 10 1 5.4414 -1.5885 -4.8941 11 6 5.4718 -3.5229 -3.9463 12 6 7.4011 -1.9408 -4.0710 13 6 7.9007 -2.5515 -5.3818 14 6 9.4025 -2.4448 -5.4454 15 6 9.9928 -1.3314 -6.0145 16 6 11.3702 -1.2295 -6.0684 17 6 12.1592 -2.2461 -5.5637 18 6 11.5693 -3.3639 -4.9989 19 9 12.3395 -4.3580 -4.5048 20 6 10.1893 -3.4622 -4.9403 21 7 2.0183 -0.6906 1.1963 22 6 2.1491 -0.0075 2.3757 23 1 1.8919 1.0404 2.4243 24 6 2.6062 -0.6633 3.5106 25 7 2.7268 -0.0080 4.6457 26 14 3.0504 -2.4758 3.4268 27 1 4.4848 -2.6179 3.0695 28 1 2.8044 -3.1073 4.7481 29 1 2.2151 -3.1430 2.3961 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5139 -0.8901 33 1 1.7516 -1.7716 -1.2055 34 1 1.6055 -0.2618 -2.1369 35 1 3.8533 0.4368 -1.3573 36 1 3.9994 -1.0730 -0.4258 37 1 3.4258 -1.7352 -3.1109 38 1 4.3855 -3.6000 -3.9003 39 1 5.8347 -4.0360 -4.8369 40 1 5.9066 -3.9829 -3.0590 41 1 7.6935 -0.8917 -4.0243 42 1 7.8392 -2.4779 -3.2297 43 1 7.6084 -3.6005 -5.4286 44 1 7.4627 -2.0144 -6.2231 45 1 9.3771 -0.5388 -6.4134 46 1 11.8302 -0.3575 -6.5090 47 1 13.2354 -2.1682 -5.6097 48 1 9.7279 -4.3337 -4.4995 49 1 2.2489 -1.6318 1.1527 50 1 3.0466 -0.4660 5.4386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731739537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:14 Heat of formation + Delta-G solvation = -96.150323 kcal Electronic energy + Delta-G solvation = -27908.124770 eV Core-core repulsion = 23847.988867 eV Total energy + Delta-G solvation = -4060.135903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.92927 -41.03162 -40.09126 -38.33753 -36.59436 -35.86644 -34.22603 -33.25284 -31.62249 -31.46940 -29.89897 -28.94757 -26.33922 -25.61291 -24.43245 -23.68603 -23.05492 -21.97638 -21.61111 -20.70046 -19.63486 -18.49018 -17.74143 -17.40264 -17.11840 -17.06543 -16.94445 -16.62857 -16.49657 -15.95408 -15.58017 -15.31151 -15.09911 -14.77859 -14.65815 -14.57763 -14.30651 -14.13410 -13.80227 -13.67833 -13.63356 -13.49288 -13.27628 -12.94351 -12.72224 -12.63119 -12.49527 -12.40514 -12.25186 -12.19662 -12.13209 -12.04792 -11.78823 -11.70731 -11.61753 -11.53107 -11.01112 -10.71338 -10.06920 -9.90517 -9.62042 -9.29940 -8.02380 -5.33743 0.18370 0.25277 1.32483 1.38357 1.43716 1.68932 2.23388 2.46930 2.62931 3.25814 3.29861 3.62794 3.63109 3.73802 3.82827 3.98073 4.00442 4.02450 4.17014 4.18431 4.29054 4.30563 4.36921 4.45549 4.53594 4.60238 4.65366 4.75291 4.76585 4.84927 4.95224 4.98649 5.01592 5.01893 5.06749 5.08757 5.13235 5.17643 5.20224 5.34107 5.36891 5.39543 5.43144 5.50663 5.59276 5.60380 5.79676 5.96368 6.22489 6.63269 7.09581 7.34514 7.87154 8.04194 9.19682 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.002006 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.750334 B =13956.729486 C =15013.089731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.041 0.959 4 C -0.117 4.117 5 C 0.126 3.874 6 N -0.713 5.713 7 C 0.501 3.499 8 O -0.596 6.596 9 C -0.097 4.097 10 H 0.134 0.866 11 C -0.146 4.146 12 C -0.092 4.092 13 C -0.074 4.074 14 C -0.058 4.058 15 C -0.131 4.131 16 C -0.091 4.091 17 C -0.169 4.169 18 C 0.071 3.929 19 F -0.154 7.154 20 C -0.165 4.165 21 N -0.750 5.750 22 C -0.220 4.220 23 H 0.056 0.944 24 C -0.069 4.069 25 N -0.987 5.987 26 Si 0.950 3.050 27 H -0.290 1.290 28 H -0.296 1.296 29 H -0.245 1.245 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.418 0.582 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.151 0.849 46 H 0.158 0.842 47 H 0.145 0.855 48 H 0.138 0.862 49 H 0.363 0.637 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.365 -8.120 -33.405 35.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.058 3.942 3 H 0.059 0.941 4 C -0.155 4.155 5 C 0.002 3.998 6 N -0.366 5.366 7 C 0.289 3.711 8 O -0.477 6.477 9 C -0.118 4.118 10 H 0.152 0.848 11 C -0.203 4.203 12 C -0.130 4.130 13 C -0.110 4.110 14 C -0.059 4.059 15 C -0.149 4.149 16 C -0.108 4.108 17 C -0.188 4.188 18 C 0.052 3.948 19 F -0.133 7.133 20 C -0.183 4.183 21 N -0.395 5.395 22 C -0.351 4.351 23 H 0.074 0.926 24 C -0.260 4.260 25 N -0.638 5.638 26 Si 0.778 3.222 27 H -0.217 1.217 28 H -0.223 1.223 29 H -0.170 1.170 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.256 0.744 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.112 0.888 44 H 0.122 0.878 45 H 0.169 0.831 46 H 0.176 0.824 47 H 0.163 0.837 48 H 0.155 0.845 49 H 0.196 0.804 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.907 -7.601 -32.726 35.027 hybrid contribution 0.593 -1.092 1.305 1.802 sum 10.500 -8.693 -31.421 34.251 Atomic orbital electron populations 1.22243 0.96652 1.01556 1.00934 1.20455 0.93363 0.95296 0.85066 0.94107 1.21948 0.92393 1.02472 0.98686 1.21132 0.95418 0.96302 0.86996 1.45927 1.07643 1.56451 1.26548 1.21594 0.82099 0.79449 0.87945 1.90728 1.56782 1.48174 1.51975 1.21357 0.96937 0.98028 0.95495 0.84793 1.21896 1.02762 0.92311 1.03372 1.21306 0.93201 1.01168 0.97367 1.20724 0.89003 1.03543 0.97769 1.19995 0.96865 0.93206 0.95797 1.21522 0.95365 0.98125 0.99851 1.21377 0.93675 0.98394 0.97385 1.21415 1.02066 0.93670 1.01608 1.18066 0.89379 0.87280 1.00109 1.91465 1.75545 1.60417 1.85898 1.21247 0.91650 1.01846 1.03599 1.42852 1.80024 1.09413 1.07165 1.19033 1.34374 0.94289 0.87423 0.92558 1.25470 1.02872 1.02309 0.95346 1.69876 1.55268 1.37609 1.01032 0.85473 0.78100 0.81424 0.77168 1.21711 1.22323 1.16974 0.92710 0.95376 0.90310 0.90014 0.87199 0.93416 0.94675 0.74408 0.90441 0.88518 0.94049 0.92614 0.93750 0.88818 0.87812 0.83113 0.82429 0.83694 0.84457 0.80352 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.49 71.98 0.68 -4.01 16 2 C 0.17 5.76 2.89 44.99 0.13 5.89 16 3 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 4 C -0.12 -2.82 4.87 30.59 0.15 -2.67 16 5 C 0.13 3.72 5.56 86.38 0.48 4.20 16 6 N -0.71 -15.26 5.45 -463.06 -2.52 -17.78 16 7 C 0.50 12.64 7.15 87.66 0.63 13.27 16 8 O -0.60 -22.48 15.92 -3.03 -0.05 -22.53 16 9 C -0.10 -1.36 2.73 -11.54 -0.03 -1.39 16 10 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 11 C -0.15 -1.48 8.84 71.98 0.64 -0.84 16 12 C -0.09 -1.54 4.01 30.59 0.12 -1.42 16 13 C -0.07 -0.73 5.10 29.85 0.15 -0.57 16 14 C -0.06 -0.83 5.13 -19.87 -0.10 -0.93 16 15 C -0.13 -1.61 9.70 22.27 0.22 -1.39 16 16 C -0.09 -1.10 10.04 22.26 0.22 -0.88 16 17 C -0.17 -2.60 10.03 22.31 0.22 -2.38 16 18 C 0.07 1.36 7.30 22.37 0.16 1.52 16 19 F -0.15 -3.41 17.27 44.97 0.78 -2.63 16 20 C -0.16 -2.85 9.68 22.31 0.22 -2.63 16 21 N -0.75 -34.20 4.38 -322.93 -1.41 -35.62 16 22 C -0.22 -12.65 10.41 84.04 0.87 -11.78 16 23 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 24 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 25 N -0.99 -65.15 13.97 21.65 0.30 -64.85 16 26 Si 0.95 47.20 27.74 68.60 1.90 49.10 16 27 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 28 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 29 H -0.25 -10.72 6.51 99.48 0.65 -10.07 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.03 1.35 7.75 -2.39 -0.02 1.33 16 37 H 0.42 5.15 7.89 -92.71 -0.73 4.42 16 38 H 0.08 0.56 7.56 -2.39 -0.02 0.54 16 39 H 0.10 0.49 6.57 -2.39 -0.02 0.48 16 40 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 1.15 7.95 -2.38 -0.02 1.13 16 42 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.09 0.67 6.51 -2.39 -0.02 0.65 16 44 H 0.10 0.54 8.08 -2.39 -0.02 0.52 16 45 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 47 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 48 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 49 H 0.36 16.02 5.66 -92.71 -0.52 15.50 16 50 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -83.13 411.82 3.85 -79.28 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -0.38 Total: 24.74 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.23 Total: -9.72 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -3.63 Total: -118.25 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.90 Total: 49.10 kcal Total: -83.13 3.85 -79.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731739537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.866 kcal (2) G-P(sol) polarization free energy of solvation -83.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds