Wall clock time and date at job start Tue Mar 31 2020 20:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 H 1.08997 * 109.47244 * 299.99932 * 18 16 15 20 20 C 1.53001 * 109.47182 * 60.00215 * 18 16 15 21 21 C 1.52997 * 109.47165 * 179.97438 * 18 16 15 22 22 C 1.53004 * 109.47352 * 174.99781 * 21 18 16 23 23 C 1.50696 * 109.47509 * 179.97438 * 22 21 18 24 24 C 1.38221 * 120.00866 * 100.00413 * 23 22 21 25 25 C 1.38227 * 120.02419 * 179.97438 * 24 23 22 26 26 C 1.38272 * 120.05184 * 0.02562 * 25 24 23 27 27 C 1.38172 * 120.02185 * 359.97438 * 26 25 24 28 28 C 1.38436 * 120.01559 * 279.72926 * 23 22 21 29 29 F 1.35099 * 120.02589 * 359.97438 * 28 23 22 30 30 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 31 31 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 33 33 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 34 34 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 38 38 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 39 39 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 40 40 H 1.08997 * 109.47262 * 59.99728 * 20 18 16 41 41 H 1.08997 * 109.46936 * 180.02562 * 20 18 16 42 42 H 1.09005 * 109.46628 * 299.99942 * 20 18 16 43 43 H 1.09000 * 109.47586 * 294.99889 * 21 18 16 44 44 H 1.09000 * 109.47436 * 55.00126 * 21 18 16 45 45 H 1.09000 * 109.46863 * 300.00551 * 22 21 18 46 46 H 1.09008 * 109.46425 * 60.00136 * 22 21 18 47 47 H 1.07995 * 119.99039 * 359.95396 * 24 23 22 48 48 H 1.07996 * 119.97090 * 179.97438 * 25 24 23 49 49 H 1.07993 * 119.98701 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.01197 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 1 0.5110 0.4426 -4.9370 20 6 2.2064 1.7671 -4.8288 21 6 2.1084 -0.3554 -6.1424 22 6 1.5980 0.3654 -7.3918 23 6 2.1020 -0.3439 -8.6222 24 6 1.2736 -1.2127 -9.3073 25 6 1.7353 -1.8630 -10.4363 26 6 3.0263 -1.6458 -10.8812 27 6 3.8562 -0.7777 -10.1979 28 6 3.3929 -0.1212 -9.0700 29 9 4.2014 0.7324 -8.4046 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.1264 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2950 35 1 1.1483 0.8591 2.3518 36 1 0.6807 1.9070 5.4838 37 1 3.1264 -0.7994 -1.2056 38 1 1.6054 -1.7198 -1.2953 39 1 1.1483 0.8592 -2.3518 40 1 3.2927 1.6897 -4.7850 41 1 1.9173 2.3300 -5.7163 42 1 1.8426 2.2807 -3.9388 43 1 3.1984 -0.3543 -6.1422 44 1 1.7462 -1.3835 -6.1428 45 1 0.5080 0.3643 -7.3920 46 1 1.9603 1.3935 -7.3915 47 1 0.2653 -1.3837 -8.9604 48 1 1.0874 -2.5420 -10.9707 49 1 3.3861 -2.1548 -11.7631 50 1 4.8647 -0.6085 -10.5453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732359380.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:50 Heat of formation + Delta-G solvation = -97.050406 kcal Electronic energy + Delta-G solvation = -27834.728999 eV Core-core repulsion = 23774.554066 eV Total energy + Delta-G solvation = -4060.174934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.87443 -41.07210 -39.97394 -38.34096 -36.65738 -35.95454 -34.20235 -33.20952 -31.82448 -31.40961 -29.25736 -27.79231 -27.15547 -26.11137 -24.52702 -23.69137 -23.22866 -21.88242 -21.49765 -20.62946 -19.19151 -18.53756 -17.94981 -17.42658 -17.32437 -16.75905 -16.67296 -16.51449 -16.39656 -15.98099 -15.46745 -15.33433 -15.16102 -15.02206 -14.67075 -14.48985 -14.27143 -14.04698 -13.76111 -13.72176 -13.58582 -13.54225 -13.25842 -12.96464 -12.78289 -12.70402 -12.57729 -12.42630 -12.21890 -12.17679 -12.08749 -11.99535 -11.71795 -11.68153 -11.63281 -11.59362 -10.94019 -10.75934 -10.07932 -9.87093 -9.55871 -8.99809 -7.95703 -5.24067 0.22320 0.29285 1.47485 1.50202 1.56364 1.66020 2.19113 2.56721 2.67800 3.35683 3.37738 3.58705 3.70385 3.73433 3.80951 3.94257 3.97365 4.03997 4.08190 4.17034 4.31967 4.33767 4.42362 4.47770 4.51019 4.54296 4.57199 4.69884 4.72589 4.78548 4.91474 4.93512 4.96424 5.02037 5.04331 5.05464 5.12268 5.15320 5.24525 5.32598 5.36035 5.37167 5.43132 5.47814 5.49073 5.50367 5.51776 6.00259 6.26782 6.57791 7.27175 7.33780 8.08659 8.33573 9.27352 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.033722 B = 0.001532 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.125261 B =18273.035541 C =18284.637269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.078 0.922 4 C 0.156 3.844 5 N -0.740 5.740 6 C -0.251 4.251 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.973 3.027 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.138 3.862 15 N -0.713 5.713 16 C 0.510 3.490 17 O -0.590 6.590 18 C -0.100 4.100 19 H 0.130 0.870 20 C -0.145 4.145 21 C -0.087 4.087 22 C -0.076 4.076 23 C -0.126 4.126 24 C -0.096 4.096 25 C -0.130 4.130 26 C -0.100 4.100 27 C -0.166 4.166 28 C 0.068 3.932 29 F -0.152 7.152 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.017 0.983 34 H 0.020 0.980 35 H 0.377 0.623 36 H 0.252 0.748 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.414 0.586 40 H 0.043 0.957 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.153 0.847 48 H 0.154 0.846 49 H 0.155 0.845 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -1.183 -35.776 35.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.097 0.903 4 C 0.029 3.971 5 N -0.383 5.383 6 C -0.383 4.383 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.013 3.987 15 N -0.366 5.366 16 C 0.298 3.702 17 O -0.470 6.470 18 C -0.121 4.121 19 H 0.148 0.852 20 C -0.203 4.203 21 C -0.125 4.125 22 C -0.113 4.113 23 C -0.127 4.127 24 C -0.114 4.114 25 C -0.147 4.147 26 C -0.118 4.118 27 C -0.185 4.185 28 C 0.049 3.951 29 F -0.131 7.131 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.210 0.790 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.252 0.748 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.100 0.900 47 H 0.170 0.830 48 H 0.172 0.828 49 H 0.173 0.827 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.476 -1.991 -35.689 35.775 hybrid contribution 0.443 0.444 1.553 1.675 sum -1.033 -1.547 -34.136 34.186 Atomic orbital electron populations 1.21722 0.93705 1.01917 1.01854 1.21326 0.97284 0.99989 0.92647 0.90317 1.20723 0.96410 0.94155 0.85809 1.42478 1.66924 1.27708 1.01238 1.19603 1.28124 1.05454 0.85123 0.90970 1.25530 1.01556 0.97876 1.01459 1.69796 1.44821 1.17861 1.29193 0.85223 0.77845 0.77205 0.79541 1.20560 1.21901 1.20490 1.21100 0.99217 0.95088 0.83313 1.45945 1.57434 1.28081 1.05096 1.21323 0.78206 0.85061 0.85614 1.90687 1.41961 1.26946 1.87408 1.21344 1.04073 0.96042 0.90661 0.85190 1.21865 1.00502 0.93567 1.04330 1.21248 1.00044 0.99036 0.92205 1.20633 1.02526 0.98802 0.89328 1.20170 0.92797 1.00656 0.99069 1.21330 1.00488 0.94684 0.94891 1.21618 0.96407 0.99995 0.96720 1.21371 0.93679 0.96652 1.00054 1.21423 1.02239 0.99282 0.95516 1.17990 0.89486 0.93542 0.94059 1.91453 1.72847 1.68599 1.80186 0.90342 0.93046 0.93855 0.96505 0.96193 0.79036 0.93934 0.92694 0.92006 0.74815 0.93754 0.89271 0.90635 0.93914 0.92227 0.87823 0.90023 0.82971 0.82787 0.82687 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 8.94 71.98 0.64 -3.12 16 2 C -0.09 -2.80 2.46 -10.79 -0.03 -2.83 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.16 6.26 5.65 86.38 0.49 6.75 16 5 N -0.74 -37.52 5.33 -343.46 -1.83 -39.35 16 6 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 9 N -0.97 -58.68 13.06 21.65 0.28 -58.39 16 10 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 C 0.14 3.74 5.06 86.38 0.44 4.18 16 15 N -0.71 -15.36 5.18 -463.06 -2.40 -17.76 16 16 C 0.51 12.24 7.15 87.66 0.63 12.87 16 17 O -0.59 -19.86 15.92 -3.04 -0.05 -19.91 16 18 C -0.10 -1.54 2.73 -11.54 -0.03 -1.57 16 19 H 0.13 1.22 8.14 -2.39 -0.02 1.21 16 20 C -0.15 -1.86 8.84 71.98 0.64 -1.22 16 21 C -0.09 -1.56 4.01 30.59 0.12 -1.44 16 22 C -0.08 -0.97 4.83 29.85 0.14 -0.82 16 23 C -0.13 -1.93 5.14 -19.82 -0.10 -2.03 16 24 C -0.10 -1.09 9.67 22.26 0.22 -0.88 16 25 C -0.13 -1.23 10.04 22.28 0.22 -1.01 16 26 C -0.10 -1.04 10.04 22.26 0.22 -0.81 16 27 C -0.17 -2.41 10.03 22.31 0.22 -2.19 16 28 C 0.07 1.25 7.24 22.38 0.16 1.41 16 29 F -0.15 -3.30 16.66 44.97 0.75 -2.55 16 30 H 0.08 1.61 7.18 -2.39 -0.02 1.59 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.46 7.18 -2.39 -0.02 1.44 16 33 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.38 19.92 6.85 -92.71 -0.63 19.28 16 36 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.41 6.51 7.07 -92.71 -0.66 5.86 16 40 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 0.82 6.56 -2.39 -0.02 0.80 16 42 H 0.07 0.78 7.56 -2.38 -0.02 0.76 16 43 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 1.23 7.95 -2.39 -0.02 1.21 16 45 H 0.10 0.80 8.01 -2.39 -0.02 0.78 16 46 H 0.08 1.01 6.36 -2.38 -0.02 0.99 16 47 H 0.15 1.02 8.04 -2.91 -0.02 0.99 16 48 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 49 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 50 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -74.37 410.71 3.72 -70.65 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.35 Total: 28.71 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 5.29 Total: -9.75 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -3.95 Total: -115.50 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.75 Total: -2.55 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -74.37 3.72 -70.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732359380.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.404 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds