Wall clock time and date at job start Tue Mar 31 2020 20:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47093 * 2 1 4 4 C 1.52997 * 109.47380 * 240.00172 * 2 1 3 5 5 C 1.53000 * 109.47051 * 64.99696 * 4 2 1 6 6 C 1.50708 * 109.47032 * 180.02562 * 5 4 2 7 7 C 1.38213 * 120.01340 * 100.00380 * 6 5 4 8 8 C 1.38228 * 120.02448 * 179.97438 * 7 6 5 9 9 C 1.38258 * 120.05209 * 0.02562 * 8 7 6 10 10 C 1.38183 * 120.02649 * 0.02562 * 9 8 7 11 11 C 1.38436 * 120.00962 * 279.72493 * 6 5 4 12 12 F 1.35101 * 120.02683 * 359.97438 * 11 6 5 13 13 C 1.50700 * 109.47193 * 119.99918 * 2 1 3 14 14 O 1.21282 * 119.99977 * 120.00179 * 13 2 1 15 15 N 1.34771 * 120.00222 * 300.00317 * 13 2 1 16 16 C 1.46500 * 120.00026 * 179.97438 * 15 13 2 17 17 C 1.53004 * 109.47129 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47217 * 305.00580 * 17 16 15 19 19 C 1.53008 * 109.46816 * 65.00299 * 17 16 15 20 20 C 1.52996 * 109.47336 * 184.99981 * 17 16 15 21 21 N 1.46498 * 109.47059 * 175.00083 * 20 17 16 22 22 C 1.36943 * 119.99752 * 179.72430 * 21 20 17 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 20 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 20 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47294 * 90.00155 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00015 * 26 24 22 29 29 H 1.48496 * 109.47166 * 329.99846 * 26 24 22 30 30 H 1.09004 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47638 * 299.99825 * 1 2 3 32 32 H 1.08997 * 109.47421 * 60.00244 * 1 2 3 33 33 H 1.08998 * 109.47570 * 184.99853 * 4 2 1 34 34 H 1.08998 * 109.47127 * 305.00103 * 4 2 1 35 35 H 1.08999 * 109.47461 * 300.00107 * 5 4 2 36 36 H 1.08997 * 109.47267 * 60.00500 * 5 4 2 37 37 H 1.07999 * 119.98809 * 359.94992 * 7 6 5 38 38 H 1.08005 * 119.97083 * 179.97438 * 8 7 6 39 39 H 1.08001 * 119.98819 * 179.97438 * 9 8 7 40 40 H 1.08002 * 120.01289 * 179.97438 * 10 9 8 41 41 H 0.97004 * 119.99945 * 359.97438 * 15 13 2 42 42 H 1.09005 * 109.47000 * 60.00500 * 16 15 13 43 43 H 1.08996 * 109.47381 * 300.00104 * 16 15 13 44 44 H 1.09001 * 109.46930 * 299.99894 * 19 17 16 45 45 H 1.09000 * 109.46973 * 59.99593 * 19 17 16 46 46 H 1.08995 * 109.47053 * 180.02562 * 19 17 16 47 47 H 1.09004 * 109.47066 * 55.00351 * 20 17 16 48 48 H 1.08994 * 109.46974 * 295.00498 * 20 17 16 49 49 H 0.97001 * 120.00384 * 0.02562 * 21 20 17 50 50 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6352 0.0690 -2.4953 6 6 2.1371 -0.6417 -3.7258 7 6 1.2772 -1.4283 -4.4689 8 6 1.7372 -2.0799 -5.5979 9 6 3.0577 -1.9460 -5.9849 10 6 3.9195 -1.1610 -5.2429 11 6 3.4581 -0.5023 -4.1155 12 9 4.2980 0.2712 -3.3934 13 6 2.0323 -0.7104 1.2305 14 8 2.7296 -1.6964 1.1192 15 7 1.7067 -0.2500 2.4545 16 6 2.1946 -0.9409 3.6507 17 6 1.6852 -0.2193 4.9000 18 1 1.9742 0.8308 4.8563 19 6 0.1602 -0.3263 4.9645 20 6 2.2949 -0.8647 6.1460 21 7 1.9027 -0.1009 7.3331 22 6 2.3282 -0.4965 8.5731 23 1 2.9566 -1.3689 8.6755 24 6 1.9519 0.2238 9.6985 25 7 1.1856 1.2867 9.5736 26 14 2.5329 -0.3153 11.3899 27 1 3.8248 0.3464 11.7038 28 1 1.5207 0.0681 12.4065 29 1 2.7152 -1.7890 11.4043 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.1263 -0.7994 -1.2056 34 1 1.6054 -1.7197 -1.2952 35 1 0.5489 0.1472 -2.5390 36 1 2.0698 1.0675 -2.4494 37 1 0.2457 -1.5343 -4.1671 38 1 1.0646 -2.6947 -6.1777 39 1 3.4161 -2.4559 -6.8669 40 1 4.9512 -1.0569 -5.5452 41 1 1.1493 0.5389 2.5436 42 1 3.2847 -0.9412 3.6509 43 1 1.8310 -1.9685 3.6505 44 1 -0.2741 0.1335 4.0768 45 1 -0.1288 -1.3764 5.0081 46 1 -0.2027 0.1882 5.8542 47 1 3.3814 -0.8681 6.0588 48 1 1.9345 -1.8893 6.2377 49 1 1.3380 0.6824 7.2411 50 1 0.9230 1.7902 10.3600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732359382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:00 Heat of formation + Delta-G solvation = -77.594161 kcal Electronic energy + Delta-G solvation = -27825.412954 eV Core-core repulsion = 23766.081707 eV Total energy + Delta-G solvation = -4059.331247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.19260 -40.10633 -39.42844 -37.00130 -35.85543 -34.36850 -32.93913 -32.20074 -30.93760 -30.02775 -28.63675 -26.59234 -25.75631 -25.10644 -23.23523 -23.00366 -22.13731 -21.17764 -20.31612 -19.51252 -17.98405 -17.39669 -16.87687 -16.80855 -16.28363 -15.95919 -15.86433 -15.62239 -14.91456 -14.74749 -14.54661 -14.23815 -14.00638 -13.97274 -13.58121 -13.53336 -13.24007 -13.09087 -12.91680 -12.76410 -12.56700 -12.32545 -12.22400 -12.03983 -11.99827 -11.70115 -11.55780 -11.11049 -11.04380 -10.93368 -10.90479 -10.69783 -10.55504 -10.40998 -10.06224 -9.77096 -9.62540 -9.36647 -9.01471 -8.99111 -8.87225 -6.91854 -5.76890 -3.05154 0.74866 0.78839 2.64635 3.11124 3.24024 3.44250 3.49549 3.51086 3.89418 4.16182 4.30525 4.49757 4.51065 4.59924 4.61956 4.70173 4.78913 4.90390 5.02126 5.04788 5.11791 5.18887 5.23386 5.27286 5.39223 5.47115 5.52498 5.53905 5.58220 5.63945 5.64781 5.77758 5.82602 5.85299 5.96260 5.97392 6.01217 6.04536 6.06287 6.12268 6.25353 6.39748 6.49009 6.51990 6.65360 6.77997 6.87460 7.51919 7.70934 8.23567 8.42347 9.53625 10.10981 10.45869 11.46117 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.032456 B = 0.001549 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.509569 B =18069.567673 C =18383.060493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.094 4.094 5 C -0.083 4.083 6 C -0.112 4.112 7 C -0.090 4.090 8 C -0.129 4.129 9 C -0.098 4.098 10 C -0.153 4.153 11 C 0.101 3.899 12 F -0.136 7.136 13 C 0.514 3.486 14 O -0.543 6.543 15 N -0.724 5.724 16 C 0.126 3.874 17 C -0.110 4.110 18 H 0.076 0.924 19 C -0.141 4.141 20 C 0.160 3.840 21 N -0.730 5.730 22 C -0.239 4.239 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.908 3.092 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.400 0.600 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.021 0.979 48 H 0.022 0.978 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -2.266 -34.232 34.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 H 0.116 0.884 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.108 4.108 8 C -0.148 4.148 9 C -0.116 4.116 10 C -0.172 4.172 11 C 0.081 3.919 12 F -0.115 7.115 13 C 0.299 3.701 14 O -0.420 6.420 15 N -0.376 5.376 16 C 0.002 3.998 17 C -0.129 4.129 18 H 0.094 0.906 19 C -0.198 4.198 20 C 0.032 3.968 21 N -0.375 5.375 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.234 0.766 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.039 0.961 48 H 0.040 0.960 49 H 0.218 0.782 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.817 -3.054 -34.119 34.304 hybrid contribution 0.088 0.541 1.166 1.288 sum -1.729 -2.513 -32.954 33.095 Atomic orbital electron populations 1.21845 0.92849 1.02935 1.02768 1.21320 0.97632 1.01000 0.93276 0.88410 1.21352 1.02271 0.98873 0.90661 1.20661 1.01650 0.98765 0.90896 1.19970 0.92342 1.00478 0.98475 1.20992 0.99672 0.95666 0.94445 1.21224 0.96015 1.00216 0.97299 1.21016 0.93372 0.97751 0.99430 1.21185 1.01326 0.99372 0.95338 1.17612 0.87897 0.94223 0.92131 1.91509 1.70540 1.72606 1.76795 1.20584 0.80146 0.84668 0.84654 1.90704 1.37934 1.26446 1.86883 1.46089 1.53630 1.32077 1.05805 1.21409 0.99168 0.96258 0.82945 1.21551 0.96612 1.00535 0.94246 0.90573 1.21786 0.94634 1.01950 1.01440 1.20576 0.96269 0.94437 0.85513 1.42335 1.61322 1.32615 1.01236 1.19252 1.24922 1.08786 0.84068 0.91151 1.24731 1.00506 0.97892 0.97883 1.69659 1.40419 1.19529 1.28724 0.86176 0.77777 0.77886 0.84283 1.21731 1.21783 1.20763 0.91920 0.91914 0.91258 0.90809 0.90943 0.90026 0.90475 0.84998 0.85349 0.85134 0.84800 0.76564 0.91454 0.91439 0.93945 0.92851 0.91173 0.96142 0.96023 0.78221 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.84 37.16 0.33 -0.63 16 2 C -0.11 -0.95 2.72 -91.77 -0.25 -1.20 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.09 -0.86 4.01 -26.73 -0.11 -0.97 16 5 C -0.08 -0.59 4.83 -27.88 -0.13 -0.72 16 6 C -0.11 -0.89 5.14 -104.55 -0.54 -1.43 16 7 C -0.09 -0.58 9.67 -39.59 -0.38 -0.96 16 8 C -0.13 -0.75 10.04 -39.58 -0.40 -1.14 16 9 C -0.10 -0.58 10.04 -39.59 -0.40 -0.98 16 10 C -0.15 -1.14 10.03 -39.51 -0.40 -1.54 16 11 C 0.10 0.92 7.24 -39.42 -0.29 0.63 16 12 F -0.14 -1.44 16.66 2.25 0.04 -1.40 16 13 C 0.51 6.42 7.15 -10.99 -0.08 6.35 16 14 O -0.54 -9.06 15.92 5.56 0.09 -8.97 16 15 N -0.72 -8.43 5.18 -60.29 -0.31 -8.74 16 16 C 0.13 1.76 5.06 -4.04 -0.02 1.74 16 17 C -0.11 -1.70 2.46 -90.62 -0.22 -1.93 16 18 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 19 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 20 C 0.16 3.21 5.65 -4.04 -0.02 3.19 16 21 N -0.73 -18.37 5.33 -59.91 -0.32 -18.69 16 22 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 26 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.38 7.56 -51.93 -0.39 -0.02 16 32 H 0.07 0.33 6.56 -51.93 -0.34 -0.01 16 33 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.43 6.43 -51.93 -0.33 0.09 16 36 H 0.08 0.55 7.94 -51.93 -0.41 0.13 16 37 H 0.13 0.59 8.04 -52.49 -0.42 0.17 16 38 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 39 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.40 3.72 7.07 -40.82 -0.29 3.44 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 1.21 7.18 -51.93 -0.37 0.83 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 50 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 410.71 15.07 6.19 6.19 Total: -1.00 -33.71 410.71 -9.68 -43.40 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.25 Total: 6.86 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -2.82 Total: -8.73 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.09 Total: -54.86 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.71 -9.68 -43.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732359382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.197 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds