Wall clock time and date at job start Tue Mar 31 2020 20:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47093 * 2 1 4 4 C 1.52997 * 109.47380 * 240.00172 * 2 1 3 5 5 C 1.53000 * 109.47051 * 64.99696 * 4 2 1 6 6 C 1.50708 * 109.47032 * 180.02562 * 5 4 2 7 7 C 1.38213 * 120.01340 * 100.00380 * 6 5 4 8 8 C 1.38228 * 120.02448 * 179.97438 * 7 6 5 9 9 C 1.38258 * 120.05209 * 0.02562 * 8 7 6 10 10 C 1.38183 * 120.02649 * 0.02562 * 9 8 7 11 11 C 1.38436 * 120.00962 * 279.72493 * 6 5 4 12 12 F 1.35101 * 120.02683 * 359.97438 * 11 6 5 13 13 C 1.50700 * 109.47193 * 119.99918 * 2 1 3 14 14 O 1.21282 * 119.99977 * 120.00179 * 13 2 1 15 15 N 1.34771 * 120.00222 * 300.00317 * 13 2 1 16 16 C 1.46500 * 120.00026 * 179.97438 * 15 13 2 17 17 C 1.53004 * 109.47129 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47217 * 305.00580 * 17 16 15 19 19 C 1.53008 * 109.46816 * 65.00299 * 17 16 15 20 20 C 1.52996 * 109.47336 * 184.99981 * 17 16 15 21 21 N 1.46498 * 109.47059 * 175.00083 * 20 17 16 22 22 C 1.36943 * 119.99752 * 179.72430 * 21 20 17 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 20 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 20 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47294 * 90.00155 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00015 * 26 24 22 29 29 H 1.48496 * 109.47166 * 329.99846 * 26 24 22 30 30 H 1.09004 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47638 * 299.99825 * 1 2 3 32 32 H 1.08997 * 109.47421 * 60.00244 * 1 2 3 33 33 H 1.08998 * 109.47570 * 184.99853 * 4 2 1 34 34 H 1.08998 * 109.47127 * 305.00103 * 4 2 1 35 35 H 1.08999 * 109.47461 * 300.00107 * 5 4 2 36 36 H 1.08997 * 109.47267 * 60.00500 * 5 4 2 37 37 H 1.07999 * 119.98809 * 359.94992 * 7 6 5 38 38 H 1.08005 * 119.97083 * 179.97438 * 8 7 6 39 39 H 1.08001 * 119.98819 * 179.97438 * 9 8 7 40 40 H 1.08002 * 120.01289 * 179.97438 * 10 9 8 41 41 H 0.97004 * 119.99945 * 359.97438 * 15 13 2 42 42 H 1.09005 * 109.47000 * 60.00500 * 16 15 13 43 43 H 1.08996 * 109.47381 * 300.00104 * 16 15 13 44 44 H 1.09001 * 109.46930 * 299.99894 * 19 17 16 45 45 H 1.09000 * 109.46973 * 59.99593 * 19 17 16 46 46 H 1.08995 * 109.47053 * 180.02562 * 19 17 16 47 47 H 1.09004 * 109.47066 * 55.00351 * 20 17 16 48 48 H 1.08994 * 109.46974 * 295.00498 * 20 17 16 49 49 H 0.97001 * 120.00384 * 0.02562 * 21 20 17 50 50 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6352 0.0690 -2.4953 6 6 2.1371 -0.6417 -3.7258 7 6 1.2772 -1.4283 -4.4689 8 6 1.7372 -2.0799 -5.5979 9 6 3.0577 -1.9460 -5.9849 10 6 3.9195 -1.1610 -5.2429 11 6 3.4581 -0.5023 -4.1155 12 9 4.2980 0.2712 -3.3934 13 6 2.0323 -0.7104 1.2305 14 8 2.7296 -1.6964 1.1192 15 7 1.7067 -0.2500 2.4545 16 6 2.1946 -0.9409 3.6507 17 6 1.6852 -0.2193 4.9000 18 1 1.9742 0.8308 4.8563 19 6 0.1602 -0.3263 4.9645 20 6 2.2949 -0.8647 6.1460 21 7 1.9027 -0.1009 7.3331 22 6 2.3282 -0.4965 8.5731 23 1 2.9566 -1.3689 8.6755 24 6 1.9519 0.2238 9.6985 25 7 1.1856 1.2867 9.5736 26 14 2.5329 -0.3153 11.3899 27 1 3.8248 0.3464 11.7038 28 1 1.5207 0.0681 12.4065 29 1 2.7152 -1.7890 11.4043 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.1263 -0.7994 -1.2056 34 1 1.6054 -1.7197 -1.2952 35 1 0.5489 0.1472 -2.5390 36 1 2.0698 1.0675 -2.4494 37 1 0.2457 -1.5343 -4.1671 38 1 1.0646 -2.6947 -6.1777 39 1 3.4161 -2.4559 -6.8669 40 1 4.9512 -1.0569 -5.5452 41 1 1.1493 0.5389 2.5436 42 1 3.2847 -0.9412 3.6509 43 1 1.8310 -1.9685 3.6505 44 1 -0.2741 0.1335 4.0768 45 1 -0.1288 -1.3764 5.0081 46 1 -0.2027 0.1882 5.8542 47 1 3.3814 -0.8681 6.0588 48 1 1.9345 -1.8893 6.2377 49 1 1.3380 0.6824 7.2411 50 1 0.9230 1.7902 10.3600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732359382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:59 Heat of formation + Delta-G solvation = -97.319089 kcal Electronic energy + Delta-G solvation = -27826.268291 eV Core-core repulsion = 23766.081707 eV Total energy + Delta-G solvation = -4060.186585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.88483 -41.07595 -39.97691 -38.34321 -36.65723 -35.95954 -34.20281 -33.20102 -31.82689 -31.41904 -29.25841 -27.77704 -27.15631 -26.09205 -24.53546 -23.70570 -23.21724 -21.88396 -21.51222 -20.61178 -19.19710 -18.55705 -17.97059 -17.45072 -17.31498 -16.79731 -16.60767 -16.52039 -16.38028 -15.95588 -15.50891 -15.38638 -15.09186 -15.01765 -14.71365 -14.52870 -14.23887 -14.08376 -13.73694 -13.73505 -13.56559 -13.48161 -13.25977 -12.95636 -12.81315 -12.74903 -12.60785 -12.30947 -12.19603 -12.17215 -12.10622 -12.00392 -11.73254 -11.69029 -11.64180 -11.57131 -10.95226 -10.75208 -10.08408 -9.87305 -9.56455 -9.00126 -7.96221 -5.24519 0.22151 0.29271 1.47340 1.48684 1.57226 1.65890 2.18737 2.56298 2.67777 3.35692 3.37436 3.58793 3.69756 3.72962 3.81084 3.94620 3.99117 4.02881 4.07644 4.17296 4.32782 4.34478 4.42184 4.46827 4.51380 4.53959 4.57550 4.69688 4.72562 4.78810 4.92893 4.97154 4.98764 4.99505 5.04497 5.07456 5.11912 5.14884 5.28512 5.30908 5.34330 5.39119 5.42707 5.48244 5.49027 5.50145 5.52370 6.00210 6.26498 6.57317 7.26785 7.33450 8.08213 8.33140 9.27092 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.032456 B = 0.001549 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.509569 B =18069.567673 C =18383.060493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.117 0.883 4 C -0.087 4.087 5 C -0.075 4.075 6 C -0.126 4.126 7 C -0.095 4.095 8 C -0.129 4.129 9 C -0.100 4.100 10 C -0.166 4.166 11 C 0.066 3.934 12 F -0.154 7.154 13 C 0.510 3.490 14 O -0.590 6.590 15 N -0.713 5.713 16 C 0.138 3.862 17 C -0.093 4.093 18 H 0.078 0.922 19 C -0.134 4.134 20 C 0.156 3.844 21 N -0.740 5.740 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.973 3.027 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.272 1.272 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.141 0.859 41 H 0.414 0.586 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.042 0.958 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.377 0.623 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -2.397 -35.919 36.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.135 0.865 4 C -0.125 4.125 5 C -0.112 4.112 6 C -0.127 4.127 7 C -0.112 4.112 8 C -0.147 4.147 9 C -0.117 4.117 10 C -0.185 4.185 11 C 0.047 3.953 12 F -0.133 7.133 13 C 0.297 3.703 14 O -0.470 6.470 15 N -0.366 5.366 16 C 0.013 3.987 17 C -0.113 4.113 18 H 0.097 0.903 19 C -0.192 4.192 20 C 0.029 3.971 21 N -0.384 5.384 22 C -0.382 4.382 23 H 0.090 0.910 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.802 3.198 27 H -0.214 1.214 28 H -0.219 1.219 29 H -0.197 1.197 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.158 0.842 41 H 0.252 0.748 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.035 0.965 48 H 0.038 0.962 49 H 0.210 0.790 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.269 -3.183 -35.832 36.121 hybrid contribution 0.570 0.509 1.596 1.769 sum -2.698 -2.674 -34.236 34.446 Atomic orbital electron populations 1.21872 0.90557 1.03046 1.04569 1.21349 0.99316 1.01075 0.90615 0.86497 1.21241 1.00112 0.98925 0.92217 1.20627 1.03103 0.98070 0.89408 1.20176 0.92195 1.01206 0.99127 1.21331 1.00527 0.94983 0.94393 1.21625 0.96299 0.99697 0.97053 1.21374 0.93436 0.97091 0.99843 1.21425 1.02185 0.99651 0.95241 1.18028 0.88588 0.95464 0.93185 1.91453 1.71158 1.73281 1.77367 1.21340 0.79143 0.84099 0.85668 1.90687 1.40083 1.28734 1.87532 1.45945 1.53454 1.32247 1.04912 1.21100 0.98400 0.95977 0.83247 1.21328 0.97058 1.00210 0.92661 0.90327 1.21719 0.93742 1.01834 1.01867 1.20723 0.96274 0.94188 0.85915 1.42486 1.61138 1.32817 1.01912 1.19638 1.24409 1.08620 0.85501 0.90957 1.25529 1.01181 0.98264 1.01477 1.69802 1.41821 1.20681 1.29394 0.85151 0.77042 0.77912 0.79713 1.21430 1.21941 1.19668 0.92644 0.90849 0.88779 0.94064 0.92072 0.87424 0.90584 0.82769 0.82676 0.82678 0.84151 0.74825 0.92677 0.92049 0.90334 0.93054 0.93846 0.96491 0.96188 0.79033 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.84 71.98 0.64 -0.79 16 2 C -0.10 -1.60 2.72 -11.54 -0.03 -1.63 16 3 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 4 C -0.09 -1.57 4.01 30.59 0.12 -1.45 16 5 C -0.08 -0.97 4.83 29.85 0.14 -0.82 16 6 C -0.13 -1.93 5.14 -19.82 -0.10 -2.04 16 7 C -0.09 -1.04 9.67 22.26 0.22 -0.82 16 8 C -0.13 -1.18 10.04 22.27 0.22 -0.96 16 9 C -0.10 -1.03 10.04 22.26 0.22 -0.81 16 10 C -0.17 -2.47 10.03 22.32 0.22 -2.24 16 11 C 0.07 1.24 7.24 22.38 0.16 1.41 16 12 F -0.15 -3.48 16.66 44.97 0.75 -2.73 16 13 C 0.51 12.39 7.15 87.66 0.63 13.01 16 14 O -0.59 -20.09 15.92 -3.04 -0.05 -20.14 16 15 N -0.71 -15.53 5.18 -463.06 -2.40 -17.93 16 16 C 0.14 3.77 5.06 86.38 0.44 4.20 16 17 C -0.09 -2.82 2.46 -10.79 -0.03 -2.85 16 18 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 19 C -0.13 -3.76 8.94 71.98 0.64 -3.12 16 20 C 0.16 6.28 5.65 86.38 0.49 6.76 16 21 N -0.74 -37.56 5.33 -343.46 -1.83 -39.39 16 22 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 23 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 25 N -0.97 -58.75 13.06 21.65 0.28 -58.46 16 26 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 29 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.60 7.56 -2.39 -0.02 0.59 16 32 H 0.09 0.51 6.56 -2.39 -0.02 0.50 16 33 H 0.04 1.00 7.95 -2.39 -0.02 0.99 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 0.79 6.43 -2.39 -0.02 0.77 16 36 H 0.08 1.00 7.94 -2.39 -0.02 0.98 16 37 H 0.15 0.91 8.04 -2.91 -0.02 0.88 16 38 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 39 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.41 6.61 7.07 -92.71 -0.66 5.95 16 42 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 1.61 7.18 -2.39 -0.02 1.60 16 45 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.04 1.46 7.18 -2.39 -0.02 1.45 16 47 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.38 19.94 6.85 -92.71 -0.63 19.30 16 50 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -74.89 410.71 3.72 -71.16 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.35 Total: 28.18 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 5.29 Total: -9.11 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -3.95 Total: -115.79 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.75 Total: -2.73 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.89 3.72 -71.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732359382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.156 kcal (2) G-P(sol) polarization free energy of solvation -74.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds