Wall clock time and date at job start Tue Mar 31 2020 20:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47347 * 2 1 4 4 C 1.53001 * 109.47069 * 240.00404 * 2 1 3 5 5 C 1.53000 * 109.47198 * 65.00171 * 4 2 1 6 6 C 1.50700 * 109.46899 * 180.02562 * 5 4 2 7 7 C 1.38228 * 120.01535 * 99.99822 * 6 5 4 8 8 C 1.38221 * 120.02779 * 179.97438 * 7 6 5 9 9 C 1.38270 * 120.04966 * 0.02562 * 8 7 6 10 10 C 1.38175 * 120.02861 * 359.97438 * 9 8 7 11 11 C 1.38445 * 120.01485 * 279.71842 * 6 5 4 12 12 F 1.35099 * 120.02199 * 0.02562 * 11 6 5 13 13 C 1.50698 * 109.47199 * 120.00568 * 2 1 3 14 14 O 1.21276 * 120.00239 * 120.00341 * 13 2 1 15 15 N 1.34779 * 119.99670 * 299.99608 * 13 2 1 16 16 C 1.46496 * 119.99965 * 179.97438 * 15 13 2 17 17 H 1.09001 * 109.47464 * 325.00834 * 16 15 13 18 18 C 1.53006 * 109.46995 * 85.00573 * 16 15 13 19 19 C 1.52999 * 109.47487 * 205.00106 * 16 15 13 20 20 C 1.53003 * 109.47015 * 64.99979 * 19 16 15 21 21 N 1.46500 * 109.47377 * 180.02562 * 20 19 16 22 22 C 1.36937 * 120.00028 * 180.02562 * 21 20 19 23 23 H 1.08007 * 119.99963 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00161 * 180.02562 * 22 21 20 25 25 N 1.31617 * 120.00306 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 119.99993 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47044 * 90.00125 * 26 24 22 28 28 H 1.48500 * 109.47460 * 210.00619 * 26 24 22 29 29 H 1.48509 * 109.47074 * 330.00255 * 26 24 22 30 30 H 1.08994 * 109.47537 * 299.99794 * 1 2 3 31 31 H 1.09004 * 109.47400 * 59.99889 * 1 2 3 32 32 H 1.08999 * 109.47400 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47385 * 185.00387 * 4 2 1 34 34 H 1.08997 * 109.47039 * 304.99626 * 4 2 1 35 35 H 1.08996 * 109.47035 * 299.99670 * 5 4 2 36 36 H 1.08997 * 109.46968 * 60.00241 * 5 4 2 37 37 H 1.07999 * 119.97956 * 359.95433 * 7 6 5 38 38 H 1.07994 * 119.97177 * 180.02562 * 8 7 6 39 39 H 1.07995 * 119.98576 * 179.97438 * 9 8 7 40 40 H 1.07997 * 120.01779 * 179.97438 * 10 9 8 41 41 H 0.97003 * 120.00044 * 0.02562 * 15 13 2 42 42 H 1.09001 * 109.47002 * 299.99701 * 18 16 15 43 43 H 1.08993 * 109.46955 * 60.00138 * 18 16 15 44 44 H 1.09000 * 109.47050 * 179.97438 * 18 16 15 45 45 H 1.08994 * 109.47465 * 185.00255 * 19 16 15 46 46 H 1.08998 * 109.47565 * 305.00687 * 19 16 15 47 47 H 1.08999 * 109.47145 * 300.00897 * 20 19 16 48 48 H 1.09000 * 109.46883 * 59.99966 * 20 19 16 49 49 H 0.96997 * 119.99983 * 0.02562 * 21 20 19 50 50 H 0.96997 * 119.99879 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 0.0691 -2.4953 6 6 2.1370 -0.6416 -3.7258 7 6 1.2770 -1.4283 -4.4690 8 6 1.7369 -2.0798 -5.5979 9 6 3.0576 -1.9460 -5.9850 10 6 3.9191 -1.1602 -5.2437 11 6 3.4581 -0.5023 -4.1157 12 9 4.2982 0.2705 -3.3930 13 6 2.0323 -0.7105 1.2304 14 8 2.7296 -1.6965 1.1190 15 7 1.7067 -0.2501 2.4545 16 6 2.1945 -0.9410 3.6506 17 1 2.2309 -2.0138 3.4611 18 6 3.5973 -0.4362 3.9948 19 6 1.2505 -0.6617 4.8218 20 6 -0.1199 -1.2763 4.5299 21 7 -1.0241 -1.0083 5.6511 22 6 -2.3144 -1.4655 5.6144 23 1 -2.6656 -2.0233 4.7588 24 6 -3.1713 -1.2111 6.6764 25 7 -4.4113 -1.6510 6.6415 26 14 -2.5641 -0.2457 8.1559 27 1 -2.8078 1.2025 7.9359 28 1 -3.2926 -0.6914 9.3708 29 1 -1.1090 -0.4809 8.3372 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1262 -0.7995 -1.2057 34 1 1.6053 -1.7197 -1.2952 35 1 0.5489 0.1473 -2.5390 36 1 2.0699 1.0676 -2.4493 37 1 0.2455 -1.5341 -4.1671 38 1 1.0641 -2.6939 -6.1781 39 1 3.4159 -2.4558 -6.8670 40 1 4.9507 -1.0561 -5.5459 41 1 1.1488 0.5384 2.5436 42 1 4.2699 -0.6352 3.1605 43 1 3.5610 0.6365 4.1843 44 1 3.9601 -0.9500 4.8850 45 1 1.6597 -1.1015 5.7312 46 1 1.1449 0.4150 4.9545 47 1 -0.5291 -0.8365 3.6204 48 1 -0.0144 -2.3530 4.3972 49 1 -0.7088 -0.5070 6.4193 50 1 -5.0099 -1.4735 7.3838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732729325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:52 Heat of formation + Delta-G solvation = -73.504724 kcal Electronic energy + Delta-G solvation = -28374.306910 eV Core-core repulsion = 24315.152994 eV Total energy + Delta-G solvation = -4059.153916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.15548 -40.13115 -39.39198 -36.91141 -35.71418 -34.49199 -32.87690 -31.77106 -30.92317 -30.67614 -28.46509 -28.23007 -25.56532 -24.09012 -23.20754 -22.98391 -21.54489 -21.22738 -20.62323 -19.88026 -17.94232 -17.63843 -17.06678 -16.79582 -16.37895 -15.98540 -15.83074 -15.39961 -14.70221 -14.61286 -14.36574 -14.29989 -13.99854 -13.87468 -13.68560 -13.51857 -13.32056 -13.12166 -12.90199 -12.70181 -12.62584 -12.40138 -12.17705 -12.04521 -11.88858 -11.62331 -11.53217 -11.47102 -11.23629 -10.99012 -10.89138 -10.83880 -10.73421 -10.50778 -10.15729 -9.65786 -9.60817 -9.30741 -9.01413 -8.95782 -8.88661 -7.24931 -5.78177 -3.13959 0.80544 0.84754 2.70711 3.16012 3.28395 3.35510 3.37941 3.43607 3.94368 4.23767 4.36687 4.55162 4.57321 4.57864 4.70863 4.79841 4.82108 4.87017 4.97080 5.12544 5.15592 5.22406 5.26696 5.27164 5.38058 5.49605 5.55616 5.62041 5.63439 5.65671 5.68100 5.72473 5.72843 5.80354 5.86040 5.93068 5.96365 6.00093 6.03849 6.13218 6.15307 6.16111 6.23683 6.53887 6.54927 6.70207 6.76222 7.57557 7.98084 8.29740 8.40751 9.19803 9.92098 10.11931 11.40239 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.001999 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.616345 B =14002.461032 C =15041.356452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 H 0.096 0.904 4 C -0.093 4.093 5 C -0.083 4.083 6 C -0.111 4.111 7 C -0.089 4.089 8 C -0.129 4.129 9 C -0.098 4.098 10 C -0.154 4.154 11 C 0.100 3.900 12 F -0.137 7.137 13 C 0.518 3.482 14 O -0.543 6.543 15 N -0.720 5.720 16 C 0.145 3.855 17 H 0.089 0.911 18 C -0.161 4.161 19 C -0.139 4.139 20 C 0.158 3.842 21 N -0.757 5.757 22 C -0.244 4.244 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.934 5.934 26 Si 0.886 3.114 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.401 0.599 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.027 0.973 48 H 0.026 0.974 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.934 5.223 -24.261 30.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 H 0.114 0.886 4 C -0.131 4.131 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.107 4.107 8 C -0.147 4.147 9 C -0.116 4.116 10 C -0.173 4.173 11 C 0.080 3.920 12 F -0.116 7.116 13 C 0.305 3.695 14 O -0.420 6.420 15 N -0.371 5.371 16 C 0.040 3.960 17 H 0.107 0.893 18 C -0.219 4.219 19 C -0.177 4.177 20 C 0.031 3.969 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.582 5.582 26 Si 0.717 3.283 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.236 0.764 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.045 0.955 48 H 0.044 0.956 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.259 4.416 -24.369 30.186 hybrid contribution 0.201 1.178 1.341 1.796 sum 17.459 5.594 -23.028 29.435 Atomic orbital electron populations 1.21859 0.92476 1.03324 1.02926 1.21319 0.97901 1.00738 0.93177 0.88606 1.21350 1.02036 0.99013 0.90712 1.20664 1.01813 0.98653 0.90882 1.19987 0.92308 1.00414 0.98467 1.21025 0.99780 0.95520 0.94369 1.21232 0.95998 1.00163 0.97285 1.21010 0.93390 0.97783 0.99442 1.21161 1.01266 0.99475 0.95385 1.17602 0.87888 0.94327 0.92149 1.91497 1.70546 1.72715 1.76808 1.20579 0.79820 0.84465 0.84682 1.90685 1.38138 1.26356 1.86868 1.46134 1.53411 1.32088 1.05507 1.20932 0.92889 0.98088 0.84094 0.89298 1.22160 0.96650 1.01280 1.01813 1.22114 0.96342 1.01798 0.97485 1.20609 0.87636 0.97390 0.91242 1.42724 1.10677 1.67624 1.19267 1.19058 0.85519 1.28766 1.04041 0.89295 1.24692 0.95686 1.00757 0.98167 1.69703 1.05098 1.50767 1.32652 0.86521 0.77947 0.80242 0.83635 1.21106 1.21720 1.20365 0.91635 0.91318 0.91689 0.90971 0.90862 0.89898 0.90560 0.84885 0.85318 0.85164 0.84877 0.76449 0.92342 0.92614 0.91646 0.90374 0.91456 0.95491 0.95639 0.80726 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.84 37.15 0.33 -0.98 16 2 C -0.11 -1.06 2.72 -91.78 -0.25 -1.31 16 3 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.09 -0.94 4.01 -26.73 -0.11 -1.04 16 5 C -0.08 -0.67 4.83 -27.88 -0.13 -0.80 16 6 C -0.11 -0.98 5.14 -104.55 -0.54 -1.51 16 7 C -0.09 -0.66 9.67 -39.59 -0.38 -1.05 16 8 C -0.13 -0.85 10.04 -39.58 -0.40 -1.24 16 9 C -0.10 -0.65 10.04 -39.59 -0.40 -1.04 16 10 C -0.15 -1.22 10.03 -39.51 -0.40 -1.61 16 11 C 0.10 0.95 7.24 -39.42 -0.29 0.67 16 12 F -0.14 -1.48 16.66 2.25 0.04 -1.44 16 13 C 0.52 6.71 7.12 -10.99 -0.08 6.63 16 14 O -0.54 -9.05 15.58 5.56 0.09 -8.96 16 15 N -0.72 -8.58 4.42 -53.81 -0.24 -8.82 16 16 C 0.14 1.88 2.57 -67.93 -0.17 1.71 16 17 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 18 C -0.16 -1.82 9.48 37.16 0.35 -1.47 16 19 C -0.14 -1.99 4.87 -26.73 -0.13 -2.12 16 20 C 0.16 3.00 6.15 -4.04 -0.02 2.98 16 21 N -0.76 -17.89 5.41 -59.91 -0.32 -18.22 16 22 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 23 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 24 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 25 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 26 Si 0.89 22.01 27.74 -169.99 -4.71 17.29 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 30 H 0.06 0.58 7.56 -51.93 -0.39 0.19 16 31 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.54 6.43 -51.93 -0.33 0.21 16 36 H 0.08 0.59 7.94 -51.93 -0.41 0.18 16 37 H 0.13 0.77 8.04 -52.49 -0.42 0.35 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.40 4.08 8.02 -40.82 -0.33 3.75 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.03 0.51 7.75 -51.93 -0.40 0.11 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.36 8.23 5.53 -40.82 -0.23 8.01 16 50 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 410.43 15.07 6.19 6.19 Total: -1.00 -34.48 410.43 -9.39 -43.87 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -8.33 Total: 8.03 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.87 Total: -9.32 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.21 Total: -55.66 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.48 -9.39 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732729325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.636 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds