Wall clock time and date at job start Tue Mar 31 2020 20:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47347 * 2 1 4 4 C 1.53001 * 109.47069 * 240.00404 * 2 1 3 5 5 C 1.53000 * 109.47198 * 65.00171 * 4 2 1 6 6 C 1.50700 * 109.46899 * 180.02562 * 5 4 2 7 7 C 1.38228 * 120.01535 * 99.99822 * 6 5 4 8 8 C 1.38221 * 120.02779 * 179.97438 * 7 6 5 9 9 C 1.38270 * 120.04966 * 0.02562 * 8 7 6 10 10 C 1.38175 * 120.02861 * 359.97438 * 9 8 7 11 11 C 1.38445 * 120.01485 * 279.71842 * 6 5 4 12 12 F 1.35099 * 120.02199 * 0.02562 * 11 6 5 13 13 C 1.50698 * 109.47199 * 120.00568 * 2 1 3 14 14 O 1.21276 * 120.00239 * 120.00341 * 13 2 1 15 15 N 1.34779 * 119.99670 * 299.99608 * 13 2 1 16 16 C 1.46496 * 119.99965 * 179.97438 * 15 13 2 17 17 H 1.09001 * 109.47464 * 325.00834 * 16 15 13 18 18 C 1.53006 * 109.46995 * 85.00573 * 16 15 13 19 19 C 1.52999 * 109.47487 * 205.00106 * 16 15 13 20 20 C 1.53003 * 109.47015 * 64.99979 * 19 16 15 21 21 N 1.46500 * 109.47377 * 180.02562 * 20 19 16 22 22 C 1.36937 * 120.00028 * 180.02562 * 21 20 19 23 23 H 1.08007 * 119.99963 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00161 * 180.02562 * 22 21 20 25 25 N 1.31617 * 120.00306 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 119.99993 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47044 * 90.00125 * 26 24 22 28 28 H 1.48500 * 109.47460 * 210.00619 * 26 24 22 29 29 H 1.48509 * 109.47074 * 330.00255 * 26 24 22 30 30 H 1.08994 * 109.47537 * 299.99794 * 1 2 3 31 31 H 1.09004 * 109.47400 * 59.99889 * 1 2 3 32 32 H 1.08999 * 109.47400 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47385 * 185.00387 * 4 2 1 34 34 H 1.08997 * 109.47039 * 304.99626 * 4 2 1 35 35 H 1.08996 * 109.47035 * 299.99670 * 5 4 2 36 36 H 1.08997 * 109.46968 * 60.00241 * 5 4 2 37 37 H 1.07999 * 119.97956 * 359.95433 * 7 6 5 38 38 H 1.07994 * 119.97177 * 180.02562 * 8 7 6 39 39 H 1.07995 * 119.98576 * 179.97438 * 9 8 7 40 40 H 1.07997 * 120.01779 * 179.97438 * 10 9 8 41 41 H 0.97003 * 120.00044 * 0.02562 * 15 13 2 42 42 H 1.09001 * 109.47002 * 299.99701 * 18 16 15 43 43 H 1.08993 * 109.46955 * 60.00138 * 18 16 15 44 44 H 1.09000 * 109.47050 * 179.97438 * 18 16 15 45 45 H 1.08994 * 109.47465 * 185.00255 * 19 16 15 46 46 H 1.08998 * 109.47565 * 305.00687 * 19 16 15 47 47 H 1.08999 * 109.47145 * 300.00897 * 20 19 16 48 48 H 1.09000 * 109.46883 * 59.99966 * 20 19 16 49 49 H 0.96997 * 119.99983 * 0.02562 * 21 20 19 50 50 H 0.96997 * 119.99879 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 0.0691 -2.4953 6 6 2.1370 -0.6416 -3.7258 7 6 1.2770 -1.4283 -4.4690 8 6 1.7369 -2.0798 -5.5979 9 6 3.0576 -1.9460 -5.9850 10 6 3.9191 -1.1602 -5.2437 11 6 3.4581 -0.5023 -4.1157 12 9 4.2982 0.2705 -3.3930 13 6 2.0323 -0.7105 1.2304 14 8 2.7296 -1.6965 1.1190 15 7 1.7067 -0.2501 2.4545 16 6 2.1945 -0.9410 3.6506 17 1 2.2309 -2.0138 3.4611 18 6 3.5973 -0.4362 3.9948 19 6 1.2505 -0.6617 4.8218 20 6 -0.1199 -1.2763 4.5299 21 7 -1.0241 -1.0083 5.6511 22 6 -2.3144 -1.4655 5.6144 23 1 -2.6656 -2.0233 4.7588 24 6 -3.1713 -1.2111 6.6764 25 7 -4.4113 -1.6510 6.6415 26 14 -2.5641 -0.2457 8.1559 27 1 -2.8078 1.2025 7.9359 28 1 -3.2926 -0.6914 9.3708 29 1 -1.1090 -0.4809 8.3372 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1262 -0.7995 -1.2057 34 1 1.6053 -1.7197 -1.2952 35 1 0.5489 0.1473 -2.5390 36 1 2.0699 1.0676 -2.4493 37 1 0.2455 -1.5341 -4.1671 38 1 1.0641 -2.6939 -6.1781 39 1 3.4159 -2.4558 -6.8670 40 1 4.9507 -1.0561 -5.5459 41 1 1.1488 0.5384 2.5436 42 1 4.2699 -0.6352 3.1605 43 1 3.5610 0.6365 4.1843 44 1 3.9601 -0.9500 4.8850 45 1 1.6597 -1.1015 5.7312 46 1 1.1449 0.4150 4.9545 47 1 -0.5291 -0.8365 3.6204 48 1 -0.0144 -2.3530 4.3972 49 1 -0.7088 -0.5070 6.4193 50 1 -5.0099 -1.4735 7.3838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732729325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:50 Heat of formation + Delta-G solvation = -94.147088 kcal Electronic energy + Delta-G solvation = -28375.202030 eV Core-core repulsion = 24315.152994 eV Total energy + Delta-G solvation = -4060.049036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.88451 -41.14151 -39.99285 -38.11614 -36.67977 -36.13227 -33.89129 -33.38535 -31.99556 -31.41692 -29.76372 -29.08242 -26.34084 -25.69933 -24.10536 -23.67524 -23.07500 -22.16225 -21.65924 -20.82614 -19.68325 -18.58185 -18.03044 -17.44970 -17.40504 -16.74648 -16.59279 -16.46373 -16.30927 -15.87880 -15.52502 -15.20834 -15.08139 -15.00173 -14.77276 -14.56047 -14.33421 -14.19495 -13.89652 -13.76114 -13.58811 -13.39552 -13.21425 -12.97202 -12.94634 -12.77334 -12.60747 -12.39654 -12.35199 -12.19957 -12.12590 -11.99308 -11.83199 -11.75717 -11.69655 -11.58345 -10.98803 -10.70220 -10.05537 -9.88176 -9.57009 -9.31391 -8.03305 -5.37985 0.21430 0.28406 1.38674 1.43184 1.50659 1.68110 2.24499 2.48727 2.66940 3.27734 3.34395 3.43890 3.58038 3.72018 3.80521 3.95653 4.01503 4.02453 4.09730 4.16280 4.24521 4.33026 4.41280 4.45410 4.50180 4.53246 4.55945 4.62506 4.70779 4.74587 4.84010 4.93176 4.96061 4.97159 5.00499 5.05678 5.14020 5.20294 5.23144 5.27071 5.30608 5.31907 5.37394 5.47059 5.51882 5.59921 5.73987 5.99248 6.20191 6.60016 7.07121 7.29991 7.81948 8.03042 9.18171 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.001999 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.616345 B =14002.461032 C =15041.356452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.121 0.879 4 C -0.085 4.085 5 C -0.076 4.076 6 C -0.126 4.126 7 C -0.098 4.098 8 C -0.129 4.129 9 C -0.099 4.099 10 C -0.164 4.164 11 C 0.070 3.930 12 F -0.152 7.152 13 C 0.512 3.488 14 O -0.587 6.587 15 N -0.713 5.713 16 C 0.148 3.852 17 H 0.063 0.937 18 C -0.152 4.152 19 C -0.123 4.123 20 C 0.156 3.844 21 N -0.757 5.757 22 C -0.239 4.239 23 H 0.051 0.949 24 C -0.067 4.067 25 N -0.984 5.984 26 Si 0.962 3.038 27 H -0.273 1.273 28 H -0.298 1.298 29 H -0.249 1.249 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.144 0.856 41 H 0.412 0.588 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.029 0.971 48 H 0.007 0.993 49 H 0.368 0.632 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.919 7.042 -24.413 31.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.139 0.861 4 C -0.123 4.123 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.115 4.115 8 C -0.147 4.147 9 C -0.116 4.116 10 C -0.183 4.183 11 C 0.051 3.949 12 F -0.130 7.130 13 C 0.300 3.700 14 O -0.467 6.467 15 N -0.365 5.365 16 C 0.043 3.957 17 H 0.082 0.918 18 C -0.210 4.210 19 C -0.161 4.161 20 C 0.030 3.970 21 N -0.403 5.403 22 C -0.370 4.370 23 H 0.069 0.931 24 C -0.258 4.258 25 N -0.635 5.635 26 Si 0.788 3.212 27 H -0.199 1.199 28 H -0.224 1.224 29 H -0.173 1.173 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.175 0.825 40 H 0.162 0.838 41 H 0.249 0.751 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.047 0.953 48 H 0.025 0.975 49 H 0.202 0.798 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.281 6.264 -24.539 31.235 hybrid contribution -0.129 0.494 1.254 1.354 sum 18.152 6.758 -23.286 30.288 Atomic orbital electron populations 1.21859 0.91528 1.02571 1.04282 1.21329 0.98421 1.01383 0.91133 0.86097 1.21225 1.00283 0.98677 0.92140 1.20619 1.02859 0.98246 0.89554 1.20160 0.92365 1.01171 0.99038 1.21315 1.00439 0.95204 0.94585 1.21607 0.96459 0.99687 0.96975 1.21376 0.93278 0.97099 0.99894 1.21424 1.02235 0.99492 0.95105 1.17966 0.88375 0.95451 0.93156 1.91450 1.71014 1.73275 1.77303 1.21202 0.79057 0.83984 0.85734 1.90666 1.40174 1.28364 1.87482 1.46104 1.53183 1.32166 1.05080 1.20810 0.93862 0.97005 0.84007 0.91837 1.22072 0.94761 1.02448 1.01738 1.21968 0.93336 1.02621 0.98161 1.20744 0.89527 0.96745 0.90010 1.42687 1.09468 1.67372 1.20800 1.19008 0.87625 1.27641 1.02694 0.93120 1.25605 0.95800 1.02549 1.01879 1.69900 1.06826 1.52876 1.33867 0.85318 0.78753 0.78633 0.78498 1.19930 1.22439 1.17339 0.91437 0.88813 0.93475 0.93429 0.92609 0.88053 0.90221 0.83318 0.82868 0.82535 0.83820 0.75123 0.93622 0.90815 0.90539 0.89565 0.89345 0.95252 0.97478 0.79817 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.84 71.98 0.64 -1.74 16 2 C -0.10 -1.88 2.72 -11.54 -0.03 -1.91 16 3 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 4 C -0.09 -1.74 4.01 30.59 0.12 -1.62 16 5 C -0.08 -1.17 4.83 29.85 0.14 -1.02 16 6 C -0.13 -2.20 5.14 -19.82 -0.10 -2.30 16 7 C -0.10 -1.35 9.67 22.26 0.22 -1.13 16 8 C -0.13 -1.47 10.04 22.27 0.22 -1.25 16 9 C -0.10 -1.14 10.04 22.26 0.22 -0.92 16 10 C -0.16 -2.53 10.03 22.31 0.22 -2.31 16 11 C 0.07 1.36 7.24 22.38 0.16 1.52 16 12 F -0.15 -3.43 16.66 44.97 0.75 -2.68 16 13 C 0.51 13.25 7.12 87.66 0.62 13.87 16 14 O -0.59 -20.25 15.58 -3.02 -0.05 -20.29 16 15 N -0.71 -16.23 4.42 -442.54 -1.96 -18.19 16 16 C 0.15 3.68 2.57 44.99 0.12 3.79 16 17 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 18 C -0.15 -3.14 9.48 71.98 0.68 -2.45 16 19 C -0.12 -3.22 4.87 30.60 0.15 -3.07 16 20 C 0.16 5.78 6.15 86.38 0.53 6.31 16 21 N -0.76 -34.78 5.41 -343.45 -1.86 -36.64 16 22 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 23 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 24 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 25 N -0.98 -63.20 13.97 21.65 0.30 -62.90 16 26 Si 0.96 44.63 27.74 68.60 1.90 46.54 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 29 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 30 H 0.07 1.09 7.56 -2.39 -0.02 1.07 16 31 H 0.09 1.07 6.57 -2.39 -0.02 1.06 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 1.20 7.95 -2.39 -0.02 1.18 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.15 6.43 -2.39 -0.02 1.13 16 36 H 0.08 1.17 7.94 -2.39 -0.02 1.15 16 37 H 0.15 1.47 8.04 -2.91 -0.02 1.45 16 38 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 39 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.41 7.51 8.02 -92.71 -0.74 6.77 16 42 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.03 1.08 7.75 -2.39 -0.02 1.07 16 48 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.37 15.72 5.53 -92.71 -0.51 15.21 16 50 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -77.49 410.43 3.98 -73.51 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -0.38 Total: 31.17 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.27 Total: -10.52 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -3.51 Total: -117.72 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.75 Total: -2.68 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.54 kcal Total: -77.49 3.98 -73.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732729325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.636 kcal (2) G-P(sol) polarization free energy of solvation -77.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds