Wall clock time and date at job start Tue Mar 31 2020 20:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 N 1.46500 * 109.46757 * 180.02562 * 5 4 2 7 7 C 1.36944 * 119.99630 * 180.02562 * 6 5 4 8 8 H 1.07992 * 120.00236 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99426 * 179.97438 * 7 6 5 10 10 N 1.31625 * 119.99844 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00477 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46802 * 90.00048 * 11 9 7 13 13 H 1.48500 * 109.47425 * 209.99678 * 11 9 7 14 14 H 1.48498 * 109.47060 * 330.00070 * 11 9 7 15 15 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 16 16 C 1.34778 * 119.99771 * 274.99826 * 15 2 1 17 17 O 1.21279 * 120.00041 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99935 * 180.02562 * 16 15 2 19 19 H 1.08999 * 109.47030 * 300.00189 * 18 16 15 20 20 C 1.53001 * 109.47311 * 60.00091 * 18 16 15 21 21 C 1.52997 * 109.47250 * 180.02562 * 18 16 15 22 22 C 1.52998 * 109.47470 * 174.99756 * 21 18 16 23 23 C 1.50697 * 109.47460 * 179.97438 * 22 21 18 24 24 C 1.38219 * 120.01153 * 100.00044 * 23 22 21 25 25 C 1.38222 * 120.02675 * 179.97438 * 24 23 22 26 26 C 1.38262 * 120.05183 * 0.02562 * 25 24 23 27 27 C 1.38175 * 120.02433 * 359.97438 * 26 25 24 28 28 C 1.38438 * 120.01592 * 279.72559 * 23 22 21 29 29 F 1.35100 * 120.02507 * 0.02562 * 28 23 22 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 34 34 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 35 35 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 36 36 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 37 37 H 0.96999 * 120.00502 * 359.97438 * 6 5 4 38 38 H 0.96993 * 120.00182 * 180.02562 * 10 9 7 39 39 H 0.96998 * 120.00630 * 95.00428 * 15 2 1 40 40 H 1.08999 * 109.46994 * 60.00075 * 20 18 16 41 41 H 1.09000 * 109.47297 * 179.97438 * 20 18 16 42 42 H 1.09005 * 109.46706 * 300.00068 * 20 18 16 43 43 H 1.08998 * 109.47268 * 295.00331 * 21 18 16 44 44 H 1.09004 * 109.47067 * 54.99855 * 21 18 16 45 45 H 1.09001 * 109.47049 * 300.00122 * 22 21 18 46 46 H 1.09004 * 109.46895 * 59.99994 * 22 21 18 47 47 H 1.08003 * 119.98561 * 359.95799 * 24 23 22 48 48 H 1.08009 * 119.97536 * 180.02562 * 25 24 23 49 49 H 1.08000 * 119.98981 * 179.97438 * 26 25 24 50 50 H 1.08008 * 120.01113 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3954 -1.3402 -2.7794 8 1 6.0938 -0.8600 -2.1101 9 6 5.8580 -1.9946 -3.9128 10 7 7.1480 -2.0295 -4.1721 11 14 4.6500 -2.8257 -5.0701 12 1 4.2148 -1.8584 -6.1094 13 1 5.3069 -3.9882 -5.7199 14 1 3.4681 -3.2912 -4.3010 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8581 1.1584 2.4117 18 6 2.6498 -0.7285 3.5875 19 1 1.9776 -1.5508 3.8325 20 6 4.0525 -1.2785 3.3215 21 6 2.7005 0.2544 4.7589 22 6 3.0910 -0.4931 6.0354 23 6 3.1416 0.4751 7.1891 24 6 2.0808 0.5551 8.0715 25 6 2.1271 1.4427 9.1301 26 6 3.2341 2.2519 9.3073 27 6 4.2958 2.1736 8.4264 28 6 4.2530 1.2807 7.3688 29 9 5.2926 1.1998 6.5098 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2618 -2.1369 35 1 3.8533 0.4369 -1.3572 36 1 3.9995 -1.0728 -0.4258 37 1 3.4260 -1.7351 -3.1110 38 1 7.4713 -2.4864 -4.9642 39 1 2.2490 -1.6318 1.1527 40 1 4.7247 -0.4562 3.0765 41 1 4.4164 -1.7919 4.2116 42 1 4.0159 -1.9789 2.4870 43 1 3.4385 1.0292 4.5514 44 1 1.7204 0.7125 4.8915 45 1 2.3529 -1.2679 6.2430 46 1 4.0712 -0.9512 5.9028 47 1 1.2152 -0.0760 7.9337 48 1 1.2978 1.5043 9.8194 49 1 3.2691 2.9454 10.1345 50 1 5.1603 2.8061 8.5648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732729326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:56 Heat of formation + Delta-G solvation = -73.214923 kcal Electronic energy + Delta-G solvation = -28425.232788 eV Core-core repulsion = 24366.091439 eV Total energy + Delta-G solvation = -4059.141349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.10986 -40.12995 -39.39183 -36.90946 -35.70938 -34.48633 -32.87744 -31.76603 -30.91872 -30.66839 -28.45448 -28.22706 -25.56795 -24.08563 -23.14639 -23.03172 -21.53973 -21.22150 -20.62338 -19.87605 -17.91035 -17.63443 -17.07044 -16.76248 -16.38505 -15.98019 -15.78833 -15.43250 -14.69256 -14.62665 -14.36405 -14.29480 -13.98795 -13.82552 -13.67064 -13.44923 -13.32854 -13.09375 -13.01719 -12.67713 -12.62214 -12.40673 -12.07760 -12.05232 -11.83888 -11.75106 -11.51777 -11.41952 -11.24921 -10.97361 -10.87996 -10.84003 -10.73205 -10.50797 -10.15373 -9.66382 -9.59769 -9.30392 -9.01258 -8.94491 -8.88071 -7.23934 -5.77050 -3.12909 0.81032 0.84793 2.70315 3.15973 3.28484 3.35724 3.38671 3.44068 3.96433 4.23319 4.38285 4.55137 4.56488 4.58221 4.72356 4.78246 4.82017 4.87241 4.97080 5.13814 5.15423 5.23326 5.26236 5.27171 5.38738 5.49636 5.54312 5.62365 5.63528 5.68731 5.69257 5.70394 5.76945 5.80348 5.84851 5.93145 5.96587 6.00197 6.05611 6.13874 6.15921 6.16196 6.23062 6.53952 6.55396 6.71171 6.76820 7.57377 7.99413 8.29478 8.41856 9.20854 9.93050 10.12828 11.41374 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.002050 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.748741 B =13653.495558 C =14747.315885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.089 0.911 4 C -0.139 4.139 5 C 0.158 3.842 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.089 0.911 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.887 3.113 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.720 5.720 16 C 0.518 3.482 17 O -0.544 6.544 18 C -0.109 4.109 19 H 0.096 0.904 20 C -0.149 4.149 21 C -0.093 4.093 22 C -0.083 4.083 23 C -0.111 4.111 24 C -0.090 4.090 25 C -0.130 4.130 26 C -0.098 4.098 27 C -0.154 4.154 28 C 0.102 3.898 29 F -0.135 7.135 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.401 0.599 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.131 0.869 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.256 3.348 27.842 31.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.177 4.177 5 C 0.031 3.969 6 N -0.403 5.403 7 C -0.374 4.374 8 H 0.107 0.893 9 C -0.193 4.193 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.371 5.371 16 C 0.305 3.695 17 O -0.421 6.421 18 C -0.131 4.131 19 H 0.114 0.886 20 C -0.206 4.206 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.148 4.148 26 C -0.116 4.116 27 C -0.172 4.172 28 C 0.082 3.918 29 F -0.113 7.113 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.236 0.764 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.149 0.851 48 H 0.146 0.854 49 H 0.148 0.852 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.167 4.237 27.843 31.526 hybrid contribution -0.396 -1.088 -1.135 1.621 sum -14.563 3.149 26.709 30.583 Atomic orbital electron populations 1.22157 0.95524 1.01879 1.02302 1.20935 0.93494 0.97796 0.83800 0.89286 1.22113 0.98086 1.00758 0.96772 1.20613 0.90150 0.96004 0.90138 1.42722 1.05317 1.66126 1.26123 1.19064 0.82233 1.29313 1.06769 0.89283 1.24697 0.95632 1.00730 0.98262 1.69707 1.11713 1.48268 1.28526 0.86515 0.80822 0.79439 0.81523 1.21086 1.21739 1.20409 1.46134 1.67131 1.14205 1.09659 1.20586 0.77080 0.87261 0.84621 1.90684 1.50226 1.16027 1.85138 1.21315 0.99140 0.99165 0.93443 0.88624 1.21859 0.94507 1.01743 1.02510 1.21353 1.03214 0.97348 0.91216 1.20665 1.03370 0.96270 0.91726 1.19980 0.93712 0.98943 0.98599 1.20985 0.97490 0.98506 0.93844 1.21210 0.98603 0.96599 0.98423 1.21006 0.92966 0.98930 0.98709 1.21187 1.00913 0.99825 0.95311 1.17614 0.85472 0.98478 0.90201 1.91521 1.55977 1.95253 1.68546 0.92362 0.91644 0.92625 0.91470 0.90365 0.95577 0.95523 0.80734 0.93064 0.76447 0.91654 0.91322 0.91659 0.90915 0.90918 0.90360 0.90075 0.85062 0.85414 0.85172 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 37.16 0.35 -1.43 16 2 C 0.14 1.87 2.57 -67.93 -0.17 1.70 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 4 C -0.14 -1.99 4.87 -26.73 -0.13 -2.12 16 5 C 0.16 3.02 6.15 -4.04 -0.02 3.00 16 6 N -0.76 -18.01 5.41 -59.91 -0.32 -18.33 16 7 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 10 N -0.93 -29.58 13.97 55.49 0.78 -28.80 16 11 Si 0.89 22.11 27.74 -169.99 -4.71 17.39 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 15 N -0.72 -8.57 4.42 -53.80 -0.24 -8.81 16 16 C 0.52 6.68 7.12 -10.98 -0.08 6.60 16 17 O -0.54 -9.01 15.58 5.56 0.09 -8.92 16 18 C -0.11 -1.05 2.72 -91.77 -0.25 -1.30 16 19 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 20 C -0.15 -1.42 8.85 37.16 0.33 -1.09 16 21 C -0.09 -0.94 4.01 -26.73 -0.11 -1.04 16 22 C -0.08 -0.67 4.83 -27.89 -0.13 -0.80 16 23 C -0.11 -0.98 5.14 -104.56 -0.54 -1.52 16 24 C -0.09 -0.64 9.67 -39.59 -0.38 -1.03 16 25 C -0.13 -0.83 10.04 -39.58 -0.40 -1.22 16 26 C -0.10 -0.65 10.04 -39.60 -0.40 -1.04 16 27 C -0.15 -1.25 10.03 -39.52 -0.40 -1.65 16 28 C 0.10 1.01 7.24 -39.42 -0.29 0.72 16 29 F -0.13 -1.55 16.66 2.25 0.04 -1.51 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.51 7.75 -51.93 -0.40 0.11 16 37 H 0.36 8.27 5.53 -40.82 -0.23 8.04 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 39 H 0.40 4.09 8.02 -40.82 -0.33 3.76 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 42 H 0.06 0.61 7.56 -51.93 -0.39 0.22 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.78 7.96 -51.93 -0.41 0.37 16 45 H 0.08 0.48 8.01 -51.93 -0.42 0.07 16 46 H 0.08 0.66 6.36 -51.93 -0.33 0.33 16 47 H 0.13 0.67 8.04 -52.48 -0.42 0.25 16 48 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 49 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 50 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 410.44 15.07 6.19 6.19 Total: -1.00 -34.72 410.44 -9.39 -44.11 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -8.33 Total: 8.10 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.87 Total: -9.40 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.21 Total: -55.94 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.72 -9.39 -44.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732729326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.106 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds