Wall clock time and date at job start Tue Mar 31 2020 20:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46901 * 2 1 4 4 C 1.53000 * 109.47041 * 240.00321 * 2 1 3 5 5 C 1.52991 * 109.47378 * 64.99808 * 4 2 1 6 6 C 1.50698 * 109.47158 * 179.97438 * 5 4 2 7 7 C 1.38249 * 119.97824 * 269.73045 * 6 5 4 8 8 C 1.38198 * 120.02305 * 179.72837 * 7 6 5 9 9 C 1.38461 * 119.97570 * 0.56181 * 8 7 6 10 10 F 1.35105 * 120.02466 * 179.68403 * 9 8 7 11 11 C 1.38457 * 119.94757 * 359.71447 * 9 8 7 12 12 C 1.38197 * 119.97372 * 359.97438 * 11 9 8 13 13 C 1.50703 * 109.46725 * 120.00052 * 2 1 3 14 14 O 1.21280 * 119.99553 * 120.00685 * 13 2 1 15 15 N 1.34770 * 120.00126 * 299.99833 * 13 2 1 16 16 C 1.46500 * 120.00194 * 180.02562 * 15 13 2 17 17 H 1.09006 * 109.46688 * 325.00081 * 16 15 13 18 18 C 1.53002 * 109.47448 * 84.99813 * 16 15 13 19 19 C 1.52993 * 109.47504 * 205.00284 * 16 15 13 20 20 N 1.46502 * 109.47453 * 54.99449 * 19 16 15 21 21 C 1.46505 * 120.00250 * 270.00840 * 20 19 16 22 22 C 1.36938 * 119.99832 * 89.99686 * 20 19 16 23 23 H 1.08004 * 119.99566 * 23.83787 * 22 20 19 24 24 C 1.38811 * 120.00084 * 203.83118 * 22 20 19 25 25 N 1.31612 * 120.00192 * 10.88492 * 24 22 20 26 26 Si 1.86802 * 119.99859 * 190.87730 * 24 22 20 27 27 H 1.48500 * 109.47316 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47172 * 120.00322 * 26 24 22 29 29 H 1.48499 * 109.47166 * 240.00170 * 26 24 22 30 30 H 1.08993 * 109.47225 * 299.99712 * 1 2 3 31 31 H 1.08999 * 109.46962 * 60.00071 * 1 2 3 32 32 H 1.09006 * 109.46957 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46957 * 304.99772 * 4 2 1 34 34 H 1.09005 * 109.46524 * 185.00465 * 4 2 1 35 35 H 1.08996 * 109.47278 * 300.00031 * 5 4 2 36 36 H 1.09008 * 109.47135 * 60.00093 * 5 4 2 37 37 H 1.07998 * 119.98299 * 359.97438 * 7 6 5 38 38 H 1.08000 * 120.00744 * 180.25274 * 8 7 6 39 39 H 1.08000 * 120.00939 * 179.97438 * 11 9 8 40 40 H 1.08003 * 119.98474 * 180.02562 * 12 11 9 41 41 H 0.96999 * 120.00493 * 0.02562 * 15 13 2 42 42 H 1.08999 * 109.47328 * 180.02562 * 18 16 15 43 43 H 1.09000 * 109.47008 * 300.00695 * 18 16 15 44 44 H 1.09003 * 109.46900 * 59.99896 * 18 16 15 45 45 H 1.08996 * 109.47654 * 174.99583 * 19 16 15 46 46 H 1.09000 * 109.46950 * 295.00080 * 19 16 15 47 47 H 1.08999 * 109.47409 * 94.93144 * 21 20 19 48 48 H 1.08999 * 109.46497 * 214.93085 * 21 20 19 49 49 H 1.08997 * 109.46738 * 334.92808 * 21 20 19 50 50 H 0.97006 * 120.00315 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6353 0.0689 -2.4953 6 6 2.1382 -0.6411 -3.7257 7 6 3.3894 -0.3430 -4.2324 8 6 3.8538 -0.9976 -5.3574 9 6 3.0607 -1.9439 -5.9839 10 9 3.5111 -2.5799 -7.0876 11 6 1.8054 -2.2375 -5.4789 12 6 1.3457 -1.5863 -4.3500 13 6 2.0323 -0.7104 1.2305 14 8 2.7296 -1.6965 1.1192 15 7 1.7067 -0.2500 2.4545 16 6 2.1954 -0.9403 3.6508 17 1 2.2324 -2.0132 3.4614 18 6 3.5979 -0.4344 3.9944 19 6 1.2514 -0.6614 4.8220 20 7 -0.1146 -1.0363 4.4483 21 6 -0.9987 -0.0514 3.8201 22 6 -0.5650 -2.3075 4.6860 23 1 -0.1067 -2.9071 5.4586 24 6 -1.6108 -2.8252 3.9342 25 7 -2.0272 -2.1888 2.8601 26 14 -2.4268 -4.4255 4.4468 27 1 -1.7787 -4.9387 5.6805 28 1 -3.8684 -4.1841 4.7093 29 1 -2.2825 -5.4255 3.3586 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 3.1264 -0.7994 -1.2055 35 1 0.5490 0.1472 -2.5389 36 1 2.0699 1.0676 -2.4494 37 1 4.0058 0.3989 -3.7465 38 1 4.8330 -0.7675 -5.7506 39 1 1.1857 -2.9752 -5.9670 40 1 0.3667 -1.8155 -3.9556 41 1 1.1488 0.5385 2.5436 42 1 3.9616 -0.9484 4.8842 43 1 4.2704 -0.6331 3.1599 44 1 3.5609 0.6384 4.1837 45 1 1.5643 -1.2450 5.6878 46 1 1.2822 0.3998 5.0687 47 1 -0.9499 -0.1583 2.7364 48 1 -2.0226 -0.2162 4.1556 49 1 -0.6814 0.9528 4.1009 50 1 -2.7577 -2.5508 2.3345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733043966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:53 Heat of formation + Delta-G solvation = -58.168491 kcal Electronic energy + Delta-G solvation = -29345.647103 eV Core-core repulsion = 25287.158216 eV Total energy + Delta-G solvation = -4058.488887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.04247 -39.68839 -39.15927 -36.53186 -35.28381 -33.95051 -32.24252 -31.31557 -31.04256 -30.00669 -27.81690 -26.19193 -25.62847 -25.02426 -23.23623 -22.91444 -21.59244 -20.87681 -20.01164 -19.29460 -17.84034 -16.83801 -16.70404 -16.55535 -15.78483 -15.69090 -15.38766 -15.04913 -14.79568 -14.28553 -14.06982 -13.79017 -13.66377 -13.57690 -13.54401 -13.17226 -13.10650 -12.81420 -12.51983 -12.24631 -12.16292 -11.91446 -11.59146 -11.51292 -11.41113 -11.33904 -11.13802 -11.06045 -10.84970 -10.77875 -10.61128 -10.53217 -10.49131 -10.16753 -9.93018 -9.85531 -9.29340 -9.09336 -8.66301 -8.58556 -8.29163 -6.73361 -5.73117 -3.18839 0.96482 1.04855 3.29873 3.37831 3.39209 3.45919 3.46934 3.87132 4.09367 4.50611 4.51411 4.58381 4.70859 4.97014 5.06241 5.09656 5.17044 5.25225 5.35507 5.46894 5.50587 5.56714 5.62425 5.67230 5.72298 5.75955 5.89417 5.90879 5.93492 6.01837 6.05594 6.10361 6.13091 6.14226 6.20875 6.27013 6.43792 6.47868 6.50112 6.55605 6.64126 6.69130 6.72826 6.91937 7.25087 7.32694 7.67709 7.80885 8.22110 8.39252 8.92840 9.23297 9.85310 10.33798 11.31686 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.002631 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.013424 B =10640.060902 C =11782.541693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 H 0.087 0.913 4 C -0.091 4.091 5 C -0.083 4.083 6 C -0.083 4.083 7 C -0.089 4.089 8 C -0.153 4.153 9 C 0.086 3.914 10 F -0.144 7.144 11 C -0.151 4.151 12 C -0.087 4.087 13 C 0.521 3.479 14 O -0.555 6.555 15 N -0.698 5.698 16 C 0.117 3.883 17 H 0.084 0.916 18 C -0.158 4.158 19 C 0.143 3.857 20 N -0.597 5.597 21 C 0.159 3.841 22 C -0.254 4.254 23 H 0.067 0.933 24 C 0.006 3.994 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.394 0.606 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.040 0.960 47 H 0.037 0.963 48 H 0.041 0.959 49 H -0.007 1.007 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.219 9.120 -12.380 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.105 0.895 4 C -0.129 4.129 5 C -0.120 4.120 6 C -0.083 4.083 7 C -0.107 4.107 8 C -0.171 4.171 9 C 0.067 3.933 10 F -0.123 7.123 11 C -0.170 4.170 12 C -0.105 4.105 13 C 0.307 3.693 14 O -0.433 6.433 15 N -0.347 5.347 16 C 0.009 3.991 17 H 0.102 0.898 18 C -0.218 4.218 19 C 0.015 3.985 20 N -0.319 5.319 21 C 0.014 3.986 22 C -0.383 4.383 23 H 0.085 0.915 24 C -0.192 4.192 25 N -0.547 5.547 26 Si 0.732 3.268 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.228 0.772 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.011 0.989 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.562 8.346 -12.569 17.348 hybrid contribution -0.686 -0.783 -0.054 1.043 sum 7.876 7.563 -12.623 16.690 Atomic orbital electron populations 1.21803 0.92077 1.03931 1.02017 1.21292 0.98263 0.99974 0.93465 0.89475 1.21342 1.01608 0.99197 0.90786 1.20739 1.01747 0.98382 0.91165 1.20039 0.94343 0.97074 0.96858 1.20943 0.95451 0.99324 0.95011 1.21123 1.00585 0.97728 0.97704 1.17730 0.94250 0.95484 0.85829 1.91487 1.89343 1.80649 1.50810 1.21157 0.95138 1.02294 0.98391 1.21005 1.00261 0.95045 0.94179 1.20390 0.79809 0.84377 0.84750 1.90636 1.39253 1.26508 1.86932 1.45782 1.52257 1.31324 1.05340 1.21820 0.92419 0.98146 0.86706 0.89814 1.22151 0.97893 1.00506 1.01204 1.21188 0.85556 0.97587 0.94219 1.43872 1.06806 1.09680 1.71540 1.20915 0.93882 0.86429 0.97333 1.19195 1.15263 0.90916 1.12961 0.91546 1.24994 1.00695 0.97837 0.95714 1.70024 1.29348 1.39519 1.15828 0.86227 0.79084 0.83626 0.77837 1.20436 1.21766 1.21794 0.91589 0.92352 0.91206 0.90984 0.91270 0.90199 0.90831 0.85022 0.84940 0.84839 0.84780 0.77235 0.92240 0.93065 0.93299 0.92464 0.94152 0.94469 0.94013 0.98892 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.84 37.16 0.33 -1.67 16 2 C -0.11 -1.50 2.73 -91.77 -0.25 -1.75 16 3 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.09 -1.19 4.01 -26.74 -0.11 -1.30 16 5 C -0.08 -0.82 5.10 -27.89 -0.14 -0.96 16 6 C -0.08 -0.86 5.13 -104.62 -0.54 -1.39 16 7 C -0.09 -0.86 9.70 -39.59 -0.38 -1.24 16 8 C -0.15 -1.51 10.03 -39.51 -0.40 -1.91 16 9 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 10 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 11 C -0.15 -1.57 10.03 -39.52 -0.40 -1.97 16 12 C -0.09 -0.90 9.70 -39.59 -0.38 -1.28 16 13 C 0.52 9.51 7.12 -10.99 -0.08 9.43 16 14 O -0.55 -12.23 15.58 5.56 0.09 -12.14 16 15 N -0.70 -12.30 4.31 -53.81 -0.23 -12.54 16 16 C 0.12 2.17 2.88 -67.93 -0.20 1.97 16 17 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 18 C -0.16 -2.39 9.48 37.16 0.35 -2.04 16 19 C 0.14 2.73 5.33 -4.04 -0.02 2.70 16 20 N -0.60 -13.98 2.78 -181.12 -0.50 -14.48 16 21 C 0.16 3.54 7.59 59.85 0.45 4.00 16 22 C -0.25 -6.75 9.66 -15.06 -0.15 -6.90 16 23 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 24 C 0.01 0.16 5.14 -17.43 -0.09 0.08 16 25 N -0.90 -24.89 10.64 55.49 0.59 -24.30 16 26 Si 0.90 21.80 29.57 -169.99 -5.03 16.77 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H 0.07 0.99 6.25 -51.93 -0.32 0.67 16 31 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.96 7.96 -51.93 -0.41 0.55 16 35 H 0.08 0.74 6.51 -51.93 -0.34 0.41 16 36 H 0.07 0.61 8.08 -51.92 -0.42 0.19 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 41 H 0.39 6.35 6.60 -40.82 -0.27 6.08 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 46 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 47 H 0.04 0.86 5.58 -51.93 -0.29 0.57 16 48 H 0.04 1.03 7.33 -51.93 -0.38 0.65 16 49 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 50 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 404.66 15.07 6.10 6.10 Total: -1.00 -31.11 404.66 -9.40 -40.51 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.18 Total: 5.28 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.28 Total: -3.57 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.14 Total: -51.31 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.11 -9.40 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733043966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.658 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds