Wall clock time and date at job start Tue Mar 31 2020 20:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46901 * 2 1 4 4 C 1.53000 * 109.47041 * 240.00321 * 2 1 3 5 5 C 1.52991 * 109.47378 * 64.99808 * 4 2 1 6 6 C 1.50698 * 109.47158 * 179.97438 * 5 4 2 7 7 C 1.38249 * 119.97824 * 269.73045 * 6 5 4 8 8 C 1.38198 * 120.02305 * 179.72837 * 7 6 5 9 9 C 1.38461 * 119.97570 * 0.56181 * 8 7 6 10 10 F 1.35105 * 120.02466 * 179.68403 * 9 8 7 11 11 C 1.38457 * 119.94757 * 359.71447 * 9 8 7 12 12 C 1.38197 * 119.97372 * 359.97438 * 11 9 8 13 13 C 1.50703 * 109.46725 * 120.00052 * 2 1 3 14 14 O 1.21280 * 119.99553 * 120.00685 * 13 2 1 15 15 N 1.34770 * 120.00126 * 299.99833 * 13 2 1 16 16 C 1.46500 * 120.00194 * 180.02562 * 15 13 2 17 17 H 1.09006 * 109.46688 * 325.00081 * 16 15 13 18 18 C 1.53002 * 109.47448 * 84.99813 * 16 15 13 19 19 C 1.52993 * 109.47504 * 205.00284 * 16 15 13 20 20 N 1.46502 * 109.47453 * 54.99449 * 19 16 15 21 21 C 1.46505 * 120.00250 * 270.00840 * 20 19 16 22 22 C 1.36938 * 119.99832 * 89.99686 * 20 19 16 23 23 H 1.08004 * 119.99566 * 23.83787 * 22 20 19 24 24 C 1.38811 * 120.00084 * 203.83118 * 22 20 19 25 25 N 1.31612 * 120.00192 * 10.88492 * 24 22 20 26 26 Si 1.86802 * 119.99859 * 190.87730 * 24 22 20 27 27 H 1.48500 * 109.47316 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47172 * 120.00322 * 26 24 22 29 29 H 1.48499 * 109.47166 * 240.00170 * 26 24 22 30 30 H 1.08993 * 109.47225 * 299.99712 * 1 2 3 31 31 H 1.08999 * 109.46962 * 60.00071 * 1 2 3 32 32 H 1.09006 * 109.46957 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46957 * 304.99772 * 4 2 1 34 34 H 1.09005 * 109.46524 * 185.00465 * 4 2 1 35 35 H 1.08996 * 109.47278 * 300.00031 * 5 4 2 36 36 H 1.09008 * 109.47135 * 60.00093 * 5 4 2 37 37 H 1.07998 * 119.98299 * 359.97438 * 7 6 5 38 38 H 1.08000 * 120.00744 * 180.25274 * 8 7 6 39 39 H 1.08000 * 120.00939 * 179.97438 * 11 9 8 40 40 H 1.08003 * 119.98474 * 180.02562 * 12 11 9 41 41 H 0.96999 * 120.00493 * 0.02562 * 15 13 2 42 42 H 1.08999 * 109.47328 * 180.02562 * 18 16 15 43 43 H 1.09000 * 109.47008 * 300.00695 * 18 16 15 44 44 H 1.09003 * 109.46900 * 59.99896 * 18 16 15 45 45 H 1.08996 * 109.47654 * 174.99583 * 19 16 15 46 46 H 1.09000 * 109.46950 * 295.00080 * 19 16 15 47 47 H 1.08999 * 109.47409 * 94.93144 * 21 20 19 48 48 H 1.08999 * 109.46497 * 214.93085 * 21 20 19 49 49 H 1.08997 * 109.46738 * 334.92808 * 21 20 19 50 50 H 0.97006 * 120.00315 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6353 0.0689 -2.4953 6 6 2.1382 -0.6411 -3.7257 7 6 3.3894 -0.3430 -4.2324 8 6 3.8538 -0.9976 -5.3574 9 6 3.0607 -1.9439 -5.9839 10 9 3.5111 -2.5799 -7.0876 11 6 1.8054 -2.2375 -5.4789 12 6 1.3457 -1.5863 -4.3500 13 6 2.0323 -0.7104 1.2305 14 8 2.7296 -1.6965 1.1192 15 7 1.7067 -0.2500 2.4545 16 6 2.1954 -0.9403 3.6508 17 1 2.2324 -2.0132 3.4614 18 6 3.5979 -0.4344 3.9944 19 6 1.2514 -0.6614 4.8220 20 7 -0.1146 -1.0363 4.4483 21 6 -0.9987 -0.0514 3.8201 22 6 -0.5650 -2.3075 4.6860 23 1 -0.1067 -2.9071 5.4586 24 6 -1.6108 -2.8252 3.9342 25 7 -2.0272 -2.1888 2.8601 26 14 -2.4268 -4.4255 4.4468 27 1 -1.7787 -4.9387 5.6805 28 1 -3.8684 -4.1841 4.7093 29 1 -2.2825 -5.4255 3.3586 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 3.1264 -0.7994 -1.2055 35 1 0.5490 0.1472 -2.5389 36 1 2.0699 1.0676 -2.4494 37 1 4.0058 0.3989 -3.7465 38 1 4.8330 -0.7675 -5.7506 39 1 1.1857 -2.9752 -5.9670 40 1 0.3667 -1.8155 -3.9556 41 1 1.1488 0.5385 2.5436 42 1 3.9616 -0.9484 4.8842 43 1 4.2704 -0.6331 3.1599 44 1 3.5609 0.6384 4.1837 45 1 1.5643 -1.2450 5.6878 46 1 1.2822 0.3998 5.0687 47 1 -0.9499 -0.1583 2.7364 48 1 -2.0226 -0.2162 4.1556 49 1 -0.6814 0.9528 4.1009 50 1 -2.7577 -2.5508 2.3345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733043966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:52 Heat of formation + Delta-G solvation = -74.329715 kcal Electronic energy + Delta-G solvation = -29346.347906 eV Core-core repulsion = 25287.158216 eV Total energy + Delta-G solvation = -4059.189690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.90015 -40.96098 -40.09629 -38.11562 -36.48191 -35.65074 -33.40414 -32.75205 -32.06823 -31.41620 -28.79531 -27.94133 -27.37213 -26.13213 -24.16247 -23.99160 -23.09713 -21.97579 -21.44851 -20.61055 -18.75124 -18.65133 -18.01141 -17.38732 -17.13146 -16.77304 -16.60442 -16.42226 -16.12011 -15.61633 -15.32275 -15.09934 -15.04324 -14.80728 -14.50296 -14.41950 -14.27152 -14.10305 -13.73171 -13.56294 -13.43910 -13.19088 -13.03723 -12.84685 -12.71147 -12.53121 -12.50946 -12.43230 -12.35615 -12.23754 -11.99736 -11.96256 -11.79500 -11.72508 -11.59220 -11.47998 -10.62391 -10.52307 -10.05262 -9.81167 -9.48494 -8.65631 -7.78082 -5.23740 0.16078 0.29089 1.42418 1.45888 1.53166 1.87529 2.47043 2.53177 2.65735 3.30561 3.35268 3.71015 3.74865 3.78100 3.88568 3.97179 4.05470 4.19290 4.22924 4.32513 4.36991 4.44137 4.55359 4.57214 4.59685 4.66806 4.79056 4.81885 4.88889 4.94267 4.96649 5.01342 5.03392 5.06504 5.14018 5.15564 5.17504 5.24715 5.30246 5.41128 5.42417 5.45321 5.48340 5.66023 5.69710 5.82727 5.90921 5.96192 6.38836 6.81801 7.22761 7.52117 7.94323 8.34804 9.23051 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.002631 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.013424 B =10640.060902 C =11782.541693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.129 0.871 4 C -0.084 4.084 5 C -0.073 4.073 6 C -0.093 4.093 7 C -0.090 4.090 8 C -0.156 4.156 9 C 0.066 3.934 10 F -0.152 7.152 11 C -0.160 4.160 12 C -0.099 4.099 13 C 0.508 3.492 14 O -0.601 6.601 15 N -0.694 5.694 16 C 0.122 3.878 17 H 0.031 0.969 18 C -0.145 4.145 19 C 0.143 3.857 20 N -0.611 5.611 21 C 0.169 3.831 22 C -0.259 4.259 23 H 0.061 0.939 24 C -0.044 4.044 25 N -0.919 5.919 26 Si 0.953 3.047 27 H -0.272 1.272 28 H -0.289 1.289 29 H -0.301 1.301 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.025 0.975 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.403 0.597 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.026 0.974 48 H 0.008 0.992 49 H 0.033 0.967 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.033 11.743 -12.194 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.119 4.119 3 H 0.147 0.853 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.093 4.093 7 C -0.108 4.108 8 C -0.174 4.174 9 C 0.047 3.953 10 F -0.131 7.131 11 C -0.179 4.179 12 C -0.117 4.117 13 C 0.296 3.704 14 O -0.483 6.483 15 N -0.343 5.343 16 C 0.014 3.986 17 H 0.049 0.951 18 C -0.203 4.203 19 C 0.016 3.984 20 N -0.333 5.333 21 C 0.025 3.975 22 C -0.390 4.390 23 H 0.078 0.922 24 C -0.240 4.240 25 N -0.565 5.565 26 Si 0.783 3.217 27 H -0.197 1.197 28 H -0.216 1.216 29 H -0.229 1.229 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.239 0.761 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.044 0.956 48 H 0.027 0.973 49 H 0.052 0.948 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.382 11.001 -12.355 19.018 hybrid contribution -0.896 -1.606 -0.055 1.840 sum 8.486 9.395 -12.411 17.728 Atomic orbital electron populations 1.21714 0.92219 1.01462 1.03429 1.21328 0.97724 1.01537 0.91311 0.85324 1.21233 1.00674 0.98068 0.92196 1.20679 1.02407 0.98913 0.88958 1.20206 0.94786 0.97178 0.97103 1.21240 0.95335 0.99488 0.94736 1.21391 1.01221 0.97146 0.97661 1.18001 0.94890 0.96291 0.86097 1.91462 1.89453 1.80919 1.51244 1.21336 0.95305 1.02626 0.98604 1.21198 1.00845 0.95289 0.94322 1.21276 0.79026 0.83990 0.86070 1.90611 1.41446 1.28637 1.87628 1.45783 1.52071 1.31322 1.05108 1.21604 0.94649 0.95514 0.86852 0.95090 1.22006 0.94844 1.02273 1.01219 1.21342 0.83367 0.99567 0.94144 1.44058 1.08852 1.08863 1.71561 1.20745 0.92206 0.88044 0.96527 1.19406 1.14985 0.92217 1.12412 0.92151 1.25592 1.01784 1.00409 0.96252 1.70149 1.29560 1.40370 1.16444 0.85414 0.78277 0.80713 0.77278 1.19685 1.21611 1.22881 0.92322 0.88719 0.95535 0.94365 0.92197 0.89414 0.88041 0.82682 0.83155 0.83909 0.84161 0.76084 0.90907 0.94268 0.90418 0.92349 0.90619 0.95578 0.97275 0.94848 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.84 71.98 0.64 -2.93 16 2 C -0.10 -2.54 2.73 -11.54 -0.03 -2.58 16 3 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.08 -2.11 4.01 30.59 0.12 -1.99 16 5 C -0.07 -1.24 5.10 29.84 0.15 -1.09 16 6 C -0.09 -1.77 5.13 -19.86 -0.10 -1.87 16 7 C -0.09 -1.55 9.70 22.26 0.22 -1.34 16 8 C -0.16 -2.87 10.03 22.31 0.22 -2.65 16 9 C 0.07 1.44 7.30 22.38 0.16 1.60 16 10 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 11 C -0.16 -3.31 10.03 22.31 0.22 -3.09 16 12 C -0.10 -1.99 9.70 22.26 0.22 -1.78 16 13 C 0.51 18.51 7.12 87.66 0.62 19.13 16 14 O -0.60 -27.36 15.58 -3.03 -0.05 -27.41 16 15 N -0.69 -23.77 4.31 -442.54 -1.91 -25.67 16 16 C 0.12 4.44 2.88 44.99 0.13 4.57 16 17 H 0.03 1.46 7.58 -2.38 -0.02 1.44 16 18 C -0.14 -4.05 9.48 71.98 0.68 -3.37 16 19 C 0.14 5.20 5.33 86.38 0.46 5.66 16 20 N -0.61 -28.25 2.78 -726.94 -2.02 -30.27 16 21 C 0.17 7.38 7.59 127.77 0.97 8.35 16 22 C -0.26 -13.94 9.66 84.03 0.81 -13.12 16 23 H 0.06 3.25 7.85 -2.91 -0.02 3.23 16 24 C -0.04 -2.44 5.14 84.86 0.44 -2.00 16 25 N -0.92 -51.81 10.64 21.65 0.23 -51.58 16 26 Si 0.95 45.63 29.57 68.60 2.03 47.65 16 27 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 29 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 30 H 0.06 1.68 6.25 -2.39 -0.01 1.67 16 31 H 0.09 1.87 6.56 -2.39 -0.02 1.86 16 32 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.62 7.96 -2.38 -0.02 1.60 16 35 H 0.09 1.38 6.51 -2.39 -0.02 1.37 16 36 H 0.10 1.22 8.08 -2.38 -0.02 1.20 16 37 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 38 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 41 H 0.40 12.12 6.60 -92.71 -0.61 11.51 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 2.11 8.03 -2.39 -0.02 2.09 16 46 H 0.08 2.25 7.86 -2.39 -0.02 2.23 16 47 H 0.03 1.20 5.58 -2.39 -0.01 1.18 16 48 H 0.01 0.42 7.33 -2.39 -0.02 0.41 16 49 H 0.03 1.16 7.84 -2.39 -0.02 1.14 16 50 H 0.24 13.57 8.31 -92.70 -0.77 12.80 16 Total: -1.00 -70.89 404.66 5.31 -65.58 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.32 Total: 22.95 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.94 Total: 1.51 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -3.70 Total: -107.52 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.89 5.31 -65.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733043966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.748 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds