Wall clock time and date at job start Tue Mar 31 2020 20:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46721 * 2 1 4 4 C 1.53001 * 109.46852 * 240.00240 * 2 1 3 5 5 N 1.46506 * 109.47062 * 184.99769 * 4 2 1 6 6 C 1.46503 * 120.00037 * 270.00089 * 5 4 2 7 7 C 1.36938 * 120.00045 * 89.99894 * 5 4 2 8 8 H 1.08000 * 119.99807 * 22.02647 * 7 5 4 9 9 C 1.38812 * 119.99935 * 202.03340 * 7 5 4 10 10 N 1.31616 * 120.00074 * 11.42994 * 9 7 5 11 11 Si 1.86798 * 119.99662 * 191.43158 * 9 7 5 12 12 H 1.48507 * 109.47116 * 90.00019 * 11 9 7 13 13 H 1.48500 * 109.47080 * 209.99418 * 11 9 7 14 14 H 1.48497 * 109.47607 * 329.99752 * 11 9 7 15 15 N 1.46494 * 109.47234 * 120.00290 * 2 1 3 16 16 C 1.34777 * 119.99862 * 275.00070 * 15 2 1 17 17 O 1.21280 * 119.99913 * 359.97438 * 16 15 2 18 18 C 1.50700 * 120.00142 * 180.02562 * 16 15 2 19 19 H 1.08994 * 109.47410 * 59.99698 * 18 16 15 20 20 C 1.53007 * 109.46858 * 299.99635 * 18 16 15 21 21 C 1.53001 * 109.47134 * 180.02562 * 18 16 15 22 22 C 1.52997 * 109.46967 * 184.99780 * 21 18 16 23 23 C 1.50698 * 109.47390 * 179.97438 * 22 21 18 24 24 C 1.38251 * 119.97320 * 269.72799 * 23 22 21 25 25 C 1.38200 * 120.02226 * 179.72348 * 24 23 22 26 26 C 1.38459 * 119.97498 * 0.56450 * 25 24 23 27 27 F 1.35105 * 120.02615 * 179.67997 * 26 25 24 28 28 C 1.38461 * 119.94947 * 359.70659 * 26 25 24 29 29 C 1.38201 * 119.97145 * 0.02562 * 28 26 25 30 30 H 1.08999 * 109.47192 * 299.99699 * 1 2 3 31 31 H 1.09002 * 109.47563 * 59.99946 * 1 2 3 32 32 H 1.09004 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47457 * 304.99373 * 4 2 1 34 34 H 1.09005 * 109.47353 * 64.99914 * 4 2 1 35 35 H 1.08999 * 109.47124 * 94.03918 * 6 5 4 36 36 H 1.08993 * 109.47050 * 214.04087 * 6 5 4 37 37 H 1.09001 * 109.47072 * 334.04124 * 6 5 4 38 38 H 0.96996 * 119.99690 * 180.02562 * 10 9 7 39 39 H 0.97004 * 120.00539 * 95.00318 * 15 2 1 40 40 H 1.08997 * 109.46963 * 59.99710 * 20 18 16 41 41 H 1.08999 * 109.47230 * 180.02562 * 20 18 16 42 42 H 1.09004 * 109.46653 * 300.00434 * 20 18 16 43 43 H 1.08999 * 109.46910 * 304.99268 * 21 18 16 44 44 H 1.08992 * 109.47761 * 64.99222 * 21 18 16 45 45 H 1.09008 * 109.47111 * 299.99485 * 22 21 18 46 46 H 1.09002 * 109.47698 * 59.99566 * 22 21 18 47 47 H 1.07998 * 119.98679 * 359.97438 * 24 23 22 48 48 H 1.08000 * 120.01459 * 180.25302 * 25 24 23 49 49 H 1.08006 * 120.01297 * 179.97438 * 28 26 25 50 50 H 1.07998 * 119.98171 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3343 0.2342 -1.7614 7 6 4.0850 -1.9158 -0.6025 8 1 3.5321 -2.8383 -0.5043 9 6 5.3885 -1.8344 -0.1323 10 7 5.9843 -0.6641 -0.0437 11 14 6.2971 -3.3858 0.3746 12 1 7.0184 -3.9425 -0.7981 13 1 7.2720 -3.0606 1.4466 14 1 5.3235 -4.3876 0.8782 15 7 2.0183 -0.6906 1.1961 16 6 2.1470 -0.0183 2.3571 17 8 1.8590 1.1585 2.4114 18 6 2.6499 -0.7286 3.5874 19 1 3.6492 -1.1204 3.3978 20 6 1.7063 -1.8829 3.9314 21 6 2.7006 0.2543 4.7588 22 6 3.3273 -0.4323 5.9739 23 6 3.3779 0.5359 7.1276 24 6 4.4881 1.3402 7.3061 25 6 4.5332 2.2325 8.3605 26 6 3.4709 2.3126 9.2448 27 9 3.5166 3.1800 10.2796 28 6 2.3619 1.5026 9.0682 29 6 2.3167 0.6150 8.0100 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 1.7515 -0.1582 -2.1371 35 1 4.5995 0.9474 -0.9810 36 1 5.2418 -0.2023 -2.1784 37 1 3.7821 0.7464 -2.5494 38 1 6.8952 -0.6073 0.2845 39 1 2.2491 -1.6318 1.1525 40 1 1.6697 -2.5832 3.0969 41 1 2.0697 -2.3963 4.8215 42 1 0.7070 -1.4910 4.1209 43 1 3.3016 1.1202 4.4808 44 1 1.6896 0.5780 5.0057 45 1 2.7264 -1.2983 6.2520 46 1 4.3385 -0.7560 5.7271 47 1 5.3188 1.2739 6.6191 48 1 5.3988 2.8636 8.4974 49 1 1.5328 1.5640 9.7577 50 1 1.4519 -0.0172 7.8723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733043969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:03 Heat of formation + Delta-G solvation = -59.243150 kcal Electronic energy + Delta-G solvation = -29412.415828 eV Core-core repulsion = 25353.880340 eV Total energy + Delta-G solvation = -4058.535488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.02410 -39.62982 -39.09827 -36.52120 -35.23844 -33.92853 -32.22592 -31.29046 -31.13390 -29.86906 -27.86860 -26.17610 -25.62054 -25.08607 -23.20984 -22.84322 -21.65201 -20.90608 -19.86484 -19.22779 -17.81779 -16.94558 -16.54953 -16.43948 -15.79157 -15.68855 -15.34967 -15.00370 -14.85282 -14.34047 -14.08712 -13.81889 -13.66465 -13.50852 -13.35823 -13.31236 -12.87949 -12.82046 -12.66477 -12.36631 -12.15105 -11.88053 -11.71305 -11.47010 -11.39629 -11.35675 -11.23121 -11.10377 -10.89840 -10.74298 -10.64377 -10.48096 -10.38593 -10.24008 -10.07104 -9.85498 -9.26896 -9.02567 -8.63569 -8.60231 -8.18925 -6.80941 -5.76818 -3.22996 0.99098 1.07292 3.29819 3.36833 3.39147 3.39940 3.41921 3.96625 4.11481 4.42408 4.54311 4.61787 4.73051 5.00832 5.11760 5.12233 5.20244 5.23052 5.32759 5.44389 5.49345 5.55941 5.65903 5.66715 5.74339 5.80315 5.91459 5.93981 5.96027 5.99099 6.00060 6.02480 6.09377 6.15420 6.18216 6.26889 6.35301 6.46304 6.51310 6.52865 6.55490 6.74507 6.75296 6.90817 7.35839 7.38135 7.67337 7.77760 8.33000 8.39143 9.04016 9.17478 9.81579 10.31893 11.27193 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.002827 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.029349 B = 9902.242062 C =10954.170121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.255 4.255 8 H 0.066 0.934 9 C 0.006 3.994 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.687 5.687 16 C 0.522 3.478 17 O -0.565 6.565 18 C -0.112 4.112 19 H 0.100 0.900 20 C -0.143 4.143 21 C -0.089 4.089 22 C -0.085 4.085 23 C -0.082 4.082 24 C -0.087 4.087 25 C -0.151 4.151 26 C 0.086 3.914 27 F -0.144 7.144 28 C -0.153 4.153 29 C -0.089 4.089 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.027 0.973 36 H 0.045 0.955 37 H -0.005 1.005 38 H 0.252 0.748 39 H 0.403 0.597 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.133 0.867 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 -0.287 12.951 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.385 4.385 8 H 0.084 0.916 9 C -0.193 4.193 10 N -0.544 5.544 11 Si 0.727 3.273 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.336 5.336 16 C 0.308 3.692 17 O -0.444 6.444 18 C -0.134 4.134 19 H 0.118 0.882 20 C -0.200 4.200 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.082 4.082 24 C -0.105 4.105 25 C -0.170 4.170 26 C 0.066 3.934 27 F -0.123 7.123 28 C -0.172 4.172 29 C -0.107 4.107 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.014 0.986 38 H 0.062 0.938 39 H 0.239 0.761 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.152 0.848 48 H 0.151 0.849 49 H 0.150 0.850 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.804 0.613 13.032 15.203 hybrid contribution 0.876 -0.966 0.509 1.400 sum -6.928 -0.352 13.542 15.215 Atomic orbital electron populations 1.22151 0.97079 1.01112 1.01426 1.21773 0.91653 0.98356 0.87229 0.90718 1.21183 0.85944 0.97829 0.93684 1.43892 0.98912 1.22625 1.66653 1.20792 0.92981 0.90458 0.93798 1.19075 0.96979 0.89470 1.32932 0.91626 1.24990 0.98610 0.96122 0.99548 1.70080 1.13109 1.21556 1.49620 0.86391 0.79966 0.82925 0.78035 1.21574 1.21778 1.20463 1.45711 1.65056 1.14282 1.08536 1.20313 0.77183 0.86966 0.84739 1.90612 1.51907 1.16245 1.85669 1.21283 1.01620 0.96778 0.93683 0.88161 1.21805 0.98946 0.97225 1.02040 1.21314 1.01740 0.97808 0.91831 1.20760 1.02551 0.96510 0.92410 1.20044 0.93882 0.97720 0.96532 1.21025 0.98374 0.94426 0.96679 1.21155 0.98612 1.01301 0.95882 1.17725 0.96473 0.91904 0.87254 1.91484 1.96788 1.67712 1.56327 1.21118 0.97888 0.97749 1.00406 1.20934 0.98412 0.97919 0.93483 0.93037 0.92418 0.93113 0.93433 0.93108 0.95455 0.93646 0.98642 0.93781 0.76149 0.92036 0.91748 0.92511 0.90901 0.91474 0.90488 0.90475 0.84770 0.84851 0.84953 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 37.16 0.35 -2.04 16 2 C 0.12 2.18 2.88 -67.93 -0.20 1.99 16 3 H 0.07 1.62 7.58 -51.93 -0.39 1.23 16 4 C 0.14 2.69 5.36 -4.04 -0.02 2.67 16 5 N -0.60 -14.00 2.82 -181.11 -0.51 -14.51 16 6 C 0.16 3.97 9.01 59.85 0.54 4.51 16 7 C -0.25 -6.30 8.02 -15.06 -0.12 -6.42 16 8 H 0.07 1.57 7.84 -52.49 -0.41 1.15 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -24.85 10.57 55.49 0.59 -24.26 16 11 Si 0.90 20.32 29.57 -169.99 -5.03 15.30 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 N -0.69 -12.81 4.38 -53.81 -0.24 -13.04 16 16 C 0.52 9.92 7.12 -10.99 -0.08 9.84 16 17 O -0.56 -12.51 15.58 5.56 0.09 -12.42 16 18 C -0.11 -1.68 2.73 -91.77 -0.25 -1.93 16 19 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 20 C -0.14 -1.68 8.84 37.16 0.33 -1.35 16 21 C -0.09 -1.22 4.01 -26.73 -0.11 -1.33 16 22 C -0.09 -0.92 5.10 -27.89 -0.14 -1.06 16 23 C -0.08 -0.89 5.13 -104.62 -0.54 -1.43 16 24 C -0.09 -0.96 9.70 -39.59 -0.38 -1.34 16 25 C -0.15 -1.63 10.03 -39.51 -0.40 -2.02 16 26 C 0.09 0.97 7.30 -39.42 -0.29 0.68 16 27 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 28 C -0.15 -1.55 10.03 -39.51 -0.40 -1.95 16 29 C -0.09 -0.89 9.70 -39.59 -0.38 -1.28 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 34 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 35 H 0.03 0.73 7.44 -51.93 -0.39 0.34 16 36 H 0.04 1.18 7.15 -51.93 -0.37 0.80 16 37 H 0.00 -0.11 7.85 -51.93 -0.41 -0.51 16 38 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.40 7.37 6.82 -40.82 -0.28 7.09 16 40 H 0.06 0.72 7.56 -51.93 -0.39 0.33 16 41 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.17 7.95 -51.93 -0.41 0.76 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 0.71 6.51 -51.92 -0.34 0.37 16 46 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 47 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 48 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 49 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 50 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 407.72 15.07 6.14 6.14 Total: -1.00 -30.09 407.72 -9.43 -39.52 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -8.34 Total: 7.33 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.17 Total: -2.39 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.16 Total: -51.81 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.09 -9.43 -39.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733043969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.721 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds