Wall clock time and date at job start Tue Mar 31 2020 20:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46721 * 2 1 4 4 C 1.53001 * 109.46852 * 240.00240 * 2 1 3 5 5 N 1.46506 * 109.47062 * 184.99769 * 4 2 1 6 6 C 1.46503 * 120.00037 * 270.00089 * 5 4 2 7 7 C 1.36938 * 120.00045 * 89.99894 * 5 4 2 8 8 H 1.08000 * 119.99807 * 22.02647 * 7 5 4 9 9 C 1.38812 * 119.99935 * 202.03340 * 7 5 4 10 10 N 1.31616 * 120.00074 * 11.42994 * 9 7 5 11 11 Si 1.86798 * 119.99662 * 191.43158 * 9 7 5 12 12 H 1.48507 * 109.47116 * 90.00019 * 11 9 7 13 13 H 1.48500 * 109.47080 * 209.99418 * 11 9 7 14 14 H 1.48497 * 109.47607 * 329.99752 * 11 9 7 15 15 N 1.46494 * 109.47234 * 120.00290 * 2 1 3 16 16 C 1.34777 * 119.99862 * 275.00070 * 15 2 1 17 17 O 1.21280 * 119.99913 * 359.97438 * 16 15 2 18 18 C 1.50700 * 120.00142 * 180.02562 * 16 15 2 19 19 H 1.08994 * 109.47410 * 59.99698 * 18 16 15 20 20 C 1.53007 * 109.46858 * 299.99635 * 18 16 15 21 21 C 1.53001 * 109.47134 * 180.02562 * 18 16 15 22 22 C 1.52997 * 109.46967 * 184.99780 * 21 18 16 23 23 C 1.50698 * 109.47390 * 179.97438 * 22 21 18 24 24 C 1.38251 * 119.97320 * 269.72799 * 23 22 21 25 25 C 1.38200 * 120.02226 * 179.72348 * 24 23 22 26 26 C 1.38459 * 119.97498 * 0.56450 * 25 24 23 27 27 F 1.35105 * 120.02615 * 179.67997 * 26 25 24 28 28 C 1.38461 * 119.94947 * 359.70659 * 26 25 24 29 29 C 1.38201 * 119.97145 * 0.02562 * 28 26 25 30 30 H 1.08999 * 109.47192 * 299.99699 * 1 2 3 31 31 H 1.09002 * 109.47563 * 59.99946 * 1 2 3 32 32 H 1.09004 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47457 * 304.99373 * 4 2 1 34 34 H 1.09005 * 109.47353 * 64.99914 * 4 2 1 35 35 H 1.08999 * 109.47124 * 94.03918 * 6 5 4 36 36 H 1.08993 * 109.47050 * 214.04087 * 6 5 4 37 37 H 1.09001 * 109.47072 * 334.04124 * 6 5 4 38 38 H 0.96996 * 119.99690 * 180.02562 * 10 9 7 39 39 H 0.97004 * 120.00539 * 95.00318 * 15 2 1 40 40 H 1.08997 * 109.46963 * 59.99710 * 20 18 16 41 41 H 1.08999 * 109.47230 * 180.02562 * 20 18 16 42 42 H 1.09004 * 109.46653 * 300.00434 * 20 18 16 43 43 H 1.08999 * 109.46910 * 304.99268 * 21 18 16 44 44 H 1.08992 * 109.47761 * 64.99222 * 21 18 16 45 45 H 1.09008 * 109.47111 * 299.99485 * 22 21 18 46 46 H 1.09002 * 109.47698 * 59.99566 * 22 21 18 47 47 H 1.07998 * 119.98679 * 359.97438 * 24 23 22 48 48 H 1.08000 * 120.01459 * 180.25302 * 25 24 23 49 49 H 1.08006 * 120.01297 * 179.97438 * 28 26 25 50 50 H 1.07998 * 119.98171 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3343 0.2342 -1.7614 7 6 4.0850 -1.9158 -0.6025 8 1 3.5321 -2.8383 -0.5043 9 6 5.3885 -1.8344 -0.1323 10 7 5.9843 -0.6641 -0.0437 11 14 6.2971 -3.3858 0.3746 12 1 7.0184 -3.9425 -0.7981 13 1 7.2720 -3.0606 1.4466 14 1 5.3235 -4.3876 0.8782 15 7 2.0183 -0.6906 1.1961 16 6 2.1470 -0.0183 2.3571 17 8 1.8590 1.1585 2.4114 18 6 2.6499 -0.7286 3.5874 19 1 3.6492 -1.1204 3.3978 20 6 1.7063 -1.8829 3.9314 21 6 2.7006 0.2543 4.7588 22 6 3.3273 -0.4323 5.9739 23 6 3.3779 0.5359 7.1276 24 6 4.4881 1.3402 7.3061 25 6 4.5332 2.2325 8.3605 26 6 3.4709 2.3126 9.2448 27 9 3.5166 3.1800 10.2796 28 6 2.3619 1.5026 9.0682 29 6 2.3167 0.6150 8.0100 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 1.7515 -0.1582 -2.1371 35 1 4.5995 0.9474 -0.9810 36 1 5.2418 -0.2023 -2.1784 37 1 3.7821 0.7464 -2.5494 38 1 6.8952 -0.6073 0.2845 39 1 2.2491 -1.6318 1.1525 40 1 1.6697 -2.5832 3.0969 41 1 2.0697 -2.3963 4.8215 42 1 0.7070 -1.4910 4.1209 43 1 3.3016 1.1202 4.4808 44 1 1.6896 0.5780 5.0057 45 1 2.7264 -1.2983 6.2520 46 1 4.3385 -0.7560 5.7271 47 1 5.3188 1.2739 6.6191 48 1 5.3988 2.8636 8.4974 49 1 1.5328 1.5640 9.7577 50 1 1.4519 -0.0172 7.8723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733043969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:02 Heat of formation + Delta-G solvation = -74.207071 kcal Electronic energy + Delta-G solvation = -29413.064712 eV Core-core repulsion = 25353.880340 eV Total energy + Delta-G solvation = -4059.184372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.90611 -40.92302 -40.10736 -38.12504 -36.47001 -35.62489 -33.43234 -32.76458 -32.08384 -31.31326 -28.82292 -28.02595 -27.34231 -26.11890 -24.12313 -24.00464 -23.21406 -21.99388 -21.33005 -20.62401 -18.73946 -18.63727 -17.90415 -17.40715 -17.13644 -16.77175 -16.60474 -16.34285 -16.25781 -15.62108 -15.33354 -15.13909 -14.89825 -14.68984 -14.55465 -14.40998 -14.40398 -14.04452 -13.81641 -13.59658 -13.40886 -13.16611 -13.06802 -12.85184 -12.69588 -12.58451 -12.50286 -12.45065 -12.33864 -12.14654 -11.97677 -11.92250 -11.91658 -11.71634 -11.62960 -11.52533 -10.58155 -10.50854 -10.06694 -9.72737 -9.50073 -8.74329 -7.73662 -5.21485 0.14576 0.27577 1.50097 1.53896 1.60504 1.90812 2.50235 2.56444 2.66322 3.29049 3.41830 3.69584 3.72789 3.76384 3.90866 3.96136 4.03682 4.17682 4.20214 4.29754 4.35387 4.46189 4.53658 4.56838 4.59146 4.68380 4.77495 4.79036 4.85886 4.93381 4.94319 5.01600 5.03510 5.05758 5.07324 5.14038 5.15781 5.22350 5.27901 5.34564 5.37093 5.43254 5.45441 5.64136 5.68475 5.75009 5.87951 5.94420 6.37944 6.88837 7.20273 7.55193 7.92547 8.39501 9.30051 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.002827 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.029349 B = 9902.242062 C =10954.170121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.120 3.880 3 H 0.034 0.966 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.180 3.820 7 C -0.245 4.245 8 H 0.082 0.918 9 C -0.047 4.047 10 N -0.937 5.937 11 Si 0.955 3.045 12 H -0.297 1.297 13 H -0.303 1.303 14 H -0.255 1.255 15 N -0.686 5.686 16 C 0.511 3.489 17 O -0.604 6.604 18 C -0.107 4.107 19 H 0.088 0.912 20 C -0.136 4.136 21 C -0.080 4.080 22 C -0.075 4.075 23 C -0.092 4.092 24 C -0.101 4.101 25 C -0.159 4.159 26 C 0.068 3.932 27 F -0.151 7.151 28 C -0.153 4.153 29 C -0.088 4.088 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.069 0.931 35 H -0.010 1.010 36 H 0.020 0.980 37 H 0.024 0.976 38 H 0.242 0.758 39 H 0.406 0.594 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.136 0.864 48 H 0.143 0.857 49 H 0.153 0.847 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.973 -2.763 13.532 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.052 0.948 4 C 0.015 3.985 5 N -0.335 5.335 6 C 0.034 3.966 7 C -0.375 4.375 8 H 0.099 0.901 9 C -0.243 4.243 10 N -0.584 5.584 11 Si 0.785 3.215 12 H -0.225 1.225 13 H -0.231 1.231 14 H -0.179 1.179 15 N -0.335 5.335 16 C 0.298 3.702 17 O -0.487 6.487 18 C -0.128 4.128 19 H 0.106 0.894 20 C -0.193 4.193 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.092 4.092 24 C -0.119 4.119 25 C -0.178 4.178 26 C 0.049 3.951 27 F -0.130 7.130 28 C -0.172 4.172 29 C -0.106 4.106 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.009 0.991 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.242 0.758 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.122 0.878 46 H 0.094 0.906 47 H 0.154 0.846 48 H 0.161 0.839 49 H 0.171 0.829 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.022 -1.901 13.602 17.002 hybrid contribution 1.500 -0.133 0.247 1.526 sum -8.522 -2.034 13.849 16.388 Atomic orbital electron populations 1.22008 0.93875 1.02649 1.01811 1.21655 0.94047 0.95973 0.87101 0.94788 1.21376 0.83289 0.99369 0.94487 1.44131 1.00819 1.22035 1.66468 1.20480 0.92802 0.90020 0.93281 1.19446 0.96854 0.90241 1.30976 0.90070 1.25669 0.99725 0.98295 1.00569 1.70280 1.12790 1.23639 1.51682 0.85438 0.78844 0.80393 0.76848 1.22501 1.23071 1.17904 1.45775 1.64794 1.14327 1.08595 1.21094 0.76468 0.86698 0.85916 1.90586 1.53690 1.18025 1.86380 1.21298 1.01542 0.97846 0.92158 0.89394 1.21802 0.98370 0.95770 1.03350 1.21202 1.01247 0.96656 0.92705 1.20683 1.02677 0.96955 0.90892 1.20160 0.94290 0.97870 0.96898 1.21175 0.98919 0.94833 0.96949 1.21315 0.99112 1.01487 0.95848 1.17978 0.97261 0.92443 0.87419 1.91465 1.96872 1.68017 1.56608 1.21400 0.97982 0.97083 1.00719 1.21225 0.98725 0.97871 0.92783 0.94304 0.90428 0.90880 0.91258 0.91239 0.99147 0.96126 0.95717 0.94908 0.75802 0.91840 0.88907 0.91840 0.94352 0.91581 0.87835 0.90625 0.84628 0.83895 0.82892 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.48 71.98 0.68 -3.35 16 2 C 0.12 4.35 2.88 44.99 0.13 4.48 16 3 H 0.03 1.51 7.58 -2.38 -0.02 1.49 16 4 C 0.14 5.08 5.36 86.38 0.46 5.54 16 5 N -0.61 -28.20 2.82 -726.91 -2.05 -30.25 16 6 C 0.18 8.82 9.01 127.77 1.15 9.97 16 7 C -0.25 -11.84 8.02 84.03 0.67 -11.17 16 8 H 0.08 3.64 7.84 -2.91 -0.02 3.62 16 9 C -0.05 -2.45 5.13 84.86 0.44 -2.02 16 10 N -0.94 -53.42 10.57 21.65 0.23 -53.19 16 11 Si 0.96 41.57 29.57 68.60 2.03 43.60 16 12 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 14 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 15 N -0.69 -25.18 4.38 -442.54 -1.94 -27.12 16 16 C 0.51 19.58 7.12 87.66 0.62 20.21 16 17 O -0.60 -27.69 15.58 -3.03 -0.05 -27.74 16 18 C -0.11 -3.15 2.73 -11.54 -0.03 -3.18 16 19 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 20 C -0.14 -2.81 8.84 71.98 0.64 -2.17 16 21 C -0.08 -2.18 4.01 30.59 0.12 -2.06 16 22 C -0.08 -1.51 5.10 29.85 0.15 -1.35 16 23 C -0.09 -1.91 5.13 -19.86 -0.10 -2.01 16 24 C -0.10 -2.22 9.70 22.26 0.22 -2.00 16 25 C -0.16 -3.44 10.03 22.31 0.22 -3.22 16 26 C 0.07 1.50 7.30 22.38 0.16 1.66 16 27 F -0.15 -3.53 17.27 44.97 0.78 -2.75 16 28 C -0.15 -2.86 10.03 22.31 0.22 -2.63 16 29 C -0.09 -1.57 9.70 22.26 0.22 -1.36 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 2.23 8.03 -2.39 -0.02 2.21 16 34 H 0.07 2.24 7.87 -2.38 -0.02 2.23 16 35 H -0.01 -0.55 7.44 -2.39 -0.02 -0.57 16 36 H 0.02 1.08 7.15 -2.39 -0.02 1.06 16 37 H 0.02 1.04 7.85 -2.39 -0.02 1.02 16 38 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 39 H 0.41 14.23 6.82 -92.71 -0.63 13.60 16 40 H 0.06 1.30 7.56 -2.39 -0.02 1.28 16 41 H 0.09 1.41 6.56 -2.39 -0.02 1.40 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.04 1.29 7.95 -2.39 -0.02 1.27 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.10 1.53 6.51 -2.38 -0.02 1.52 16 46 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 47 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 48 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 49 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 50 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -67.65 407.72 5.27 -62.38 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.29 Total: 29.72 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 5.98 Total: 5.34 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -3.76 Total: -110.56 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.75 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -67.65 5.27 -62.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733043969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.822 kcal (2) G-P(sol) polarization free energy of solvation -67.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds