Wall clock time and date at job start Tue Mar 31 2020 20:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47077 * 2 1 4 4 C 1.52995 * 109.47438 * 120.00393 * 2 1 3 5 5 C 1.50706 * 109.47200 * 295.00200 * 4 2 1 6 6 C 1.39869 * 126.03844 * 269.69440 * 5 4 2 7 7 N 1.30837 * 108.20496 * 179.81153 * 6 5 4 8 8 N 1.40083 * 108.20001 * 0.44021 * 7 6 5 9 9 C 1.46507 * 126.03617 * 179.74069 * 8 7 6 10 10 C 1.34950 * 107.93149 * 359.71584 * 8 7 6 11 11 C 1.50700 * 109.47179 * 240.00422 * 2 1 3 12 12 O 1.21287 * 119.99825 * 248.12600 * 11 2 1 13 13 N 1.34775 * 120.00232 * 68.12937 * 11 2 1 14 14 C 1.47151 * 120.98356 * 183.25180 * 13 11 2 15 15 C 1.52879 * 108.60784 * 230.49608 * 14 13 11 16 16 O 1.42959 * 109.30061 * 307.93536 * 15 14 13 17 17 C 1.42966 * 114.16583 * 62.44727 * 16 15 14 18 18 H 1.08991 * 109.55374 * 57.36923 * 17 16 15 19 19 C 1.52995 * 109.51241 * 177.49806 * 17 16 15 20 20 N 1.46493 * 109.47125 * 299.74538 * 19 17 16 21 21 C 1.36941 * 120.00100 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99917 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00097 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99919 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00212 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46891 * 60.00125 * 25 23 21 27 27 H 1.48498 * 109.47537 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47318 * 300.00584 * 25 23 21 29 29 C 1.47150 * 120.98103 * 3.52877 * 13 11 2 30 30 H 1.08996 * 109.46856 * 186.73873 * 1 2 3 31 31 H 1.08997 * 109.47374 * 306.73657 * 1 2 3 32 32 H 1.09003 * 109.46854 * 66.74015 * 1 2 3 33 33 H 1.09005 * 109.47186 * 54.99699 * 4 2 1 34 34 H 1.08997 * 109.47504 * 175.00161 * 4 2 1 35 35 H 1.07997 * 125.89807 * 359.97438 * 6 5 4 36 36 H 1.08996 * 109.46830 * 269.96764 * 9 8 7 37 37 H 1.09001 * 109.47225 * 29.96823 * 9 8 7 38 38 H 1.09000 * 109.47225 * 149.97148 * 9 8 7 39 39 H 1.07991 * 126.13121 * 180.02562 * 10 8 7 40 40 H 1.09002 * 109.68234 * 350.27686 * 14 13 11 41 41 H 1.09003 * 109.68571 * 110.82854 * 14 13 11 42 42 H 1.08997 * 109.58451 * 187.91823 * 15 14 13 43 43 H 1.09008 * 109.40504 * 67.84182 * 15 14 13 44 44 H 1.09000 * 109.47238 * 59.74403 * 19 17 16 45 45 H 1.09007 * 109.47195 * 179.74321 * 19 17 16 46 46 H 0.97000 * 120.00402 * 359.97438 * 20 19 17 47 47 H 0.97007 * 120.00156 * 179.97438 * 24 23 21 48 48 H 1.09001 * 109.68022 * 249.16890 * 29 13 11 49 49 H 1.08996 * 109.68047 * 9.68381 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 0.0569 2.4766 6 6 2.3927 1.0625 3.0934 7 7 1.7181 1.5027 4.1244 8 7 0.5188 0.7830 4.2022 9 6 -0.5262 0.9562 5.2143 10 6 0.4958 -0.0977 3.1800 11 6 2.0323 -0.7103 -1.2305 12 8 2.6034 -1.7751 -1.1253 13 7 1.8470 -0.1623 -2.4478 14 6 2.2651 -0.8697 -3.6686 15 6 3.1047 0.0822 -4.5207 16 8 2.3880 1.3049 -4.7087 17 6 2.1213 2.0189 -3.4992 18 1 3.0594 2.2314 -2.9866 19 6 1.4094 3.3327 -3.8277 20 7 2.2655 4.1492 -4.6916 21 6 1.8351 5.3771 -5.1187 22 1 0.8647 5.7437 -4.8182 23 6 2.6466 6.1510 -5.9369 24 7 3.8294 5.7045 -6.3027 25 14 2.0592 7.8256 -6.5201 26 1 1.8001 8.6960 -5.3451 27 1 3.1030 8.4463 -7.3747 28 1 0.8077 7.6661 -7.3034 29 6 1.2262 1.1636 -2.5951 30 1 -0.3633 -1.0205 0.1206 31 1 -0.3634 0.6147 0.8235 32 1 -0.3633 0.4058 -0.9442 33 1 1.6054 -1.7199 1.2950 34 1 3.1263 -0.7995 1.2055 35 1 3.3612 1.4165 2.7724 36 1 -0.3263 0.2976 6.0594 37 1 -0.5344 1.9917 5.5546 38 1 -1.4956 0.7083 4.7818 39 1 -0.2953 -0.7999 2.9622 40 1 2.8601 -1.7430 -3.4013 41 1 1.3854 -1.1825 -4.2312 42 1 3.3050 -0.3750 -5.4896 43 1 4.0472 0.2871 -4.0129 44 1 0.4723 3.1194 -4.3418 45 1 1.2024 3.8744 -2.9047 46 1 3.1373 3.8202 -4.9612 47 1 4.3963 6.2451 -6.8748 48 1 0.2402 1.0591 -3.0477 49 1 1.1330 1.6359 -1.6172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733745782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:49 Heat of formation + Delta-G solvation = 15.461997 kcal Electronic energy + Delta-G solvation = -29401.533203 eV Core-core repulsion = 25366.157135 eV Total energy + Delta-G solvation = -4035.376068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52307 -40.48517 -38.45729 -35.46651 -34.89298 -34.48960 -33.28621 -32.17591 -30.67450 -29.99930 -28.25489 -27.92110 -25.98707 -25.52998 -24.13843 -23.00780 -21.87423 -21.31169 -20.82561 -20.27511 -18.96032 -17.54590 -17.15317 -16.79051 -16.53091 -16.01149 -15.68520 -15.56210 -15.08638 -14.76465 -14.52645 -14.48088 -14.39519 -13.99178 -13.50372 -13.47622 -13.14941 -13.08057 -13.01944 -12.73276 -12.62863 -12.47937 -12.44113 -12.14750 -12.04200 -11.64626 -11.40345 -11.27487 -10.97038 -10.89323 -10.78191 -10.70418 -10.43553 -10.08835 -9.88256 -9.76102 -9.67749 -9.62008 -8.86385 -8.61044 -8.50614 -6.89536 -5.72541 -3.01595 1.61739 2.24853 2.50522 2.54908 2.86588 3.46227 3.50254 3.51639 3.97676 4.18156 4.33273 4.52950 4.58225 4.69775 4.74630 4.79260 4.80011 4.87329 4.94055 5.01634 5.12963 5.14389 5.22257 5.22964 5.27946 5.32655 5.48901 5.51749 5.58581 5.60098 5.62828 5.68604 5.78574 5.85189 5.88847 5.94341 5.98442 6.07736 6.26366 6.33299 6.41411 6.51152 6.67198 6.72379 7.27695 7.44387 7.47865 7.70818 8.06768 8.45441 9.57096 10.14363 10.49978 11.50063 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.002623 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.255529 B =10673.474470 C =12519.098693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.018 4.018 5 C -0.231 4.231 6 C 0.054 3.946 7 N -0.298 5.298 8 N -0.379 5.379 9 C 0.102 3.898 10 C 0.057 3.943 11 C 0.522 3.478 12 O -0.545 6.545 13 N -0.612 5.612 14 C 0.077 3.923 15 C 0.046 3.954 16 O -0.356 6.356 17 C 0.072 3.928 18 H 0.063 0.937 19 C 0.164 3.836 20 N -0.725 5.725 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.079 3.921 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.183 0.817 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.171 0.829 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.053 0.947 44 H 0.028 0.972 45 H 0.034 0.966 46 H 0.388 0.612 47 H 0.255 0.745 48 H 0.080 0.920 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 -16.141 19.510 26.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.116 0.884 4 C -0.057 4.057 5 C -0.243 4.243 6 C -0.132 4.132 7 N -0.119 5.119 8 N -0.161 5.161 9 C -0.040 4.040 10 C -0.089 4.089 11 C 0.311 3.689 12 O -0.423 6.423 13 N -0.346 5.346 14 C -0.046 4.046 15 C -0.031 4.031 16 O -0.274 6.274 17 C 0.013 3.987 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.370 5.370 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.045 4.045 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.200 0.800 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.189 0.811 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.222 0.778 47 H 0.065 0.935 48 H 0.098 0.902 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.761 -15.654 20.461 27.211 hybrid contribution 0.000 0.231 -0.943 0.971 sum -8.761 -15.422 19.518 26.373 Atomic orbital electron populations 1.21858 0.92817 1.02611 1.02921 1.21309 0.97830 1.01100 0.92486 0.88393 1.19654 1.01496 0.96931 0.87664 1.20051 0.96702 1.04893 1.02648 1.23869 1.00153 0.95921 0.93251 1.77388 0.93994 1.18716 1.21769 1.48472 1.16069 1.28656 1.22945 1.21844 0.87764 1.04257 0.90097 1.22329 1.00016 0.96211 0.90317 1.20719 0.78442 0.85464 0.84248 1.90669 1.42577 1.22819 1.86217 1.48162 1.61106 1.19327 1.06003 1.22252 1.00245 0.96605 0.85500 1.22851 0.94156 0.85693 1.00450 1.88168 1.75696 1.33925 1.29644 1.22795 0.97925 0.92279 0.85741 0.91877 1.20624 0.93912 0.87135 0.94809 1.42202 1.19131 1.17673 1.57994 1.19164 1.00612 0.93153 1.24299 0.91230 1.24746 0.96615 0.98890 1.00650 1.69665 1.09979 1.38055 1.40237 0.86263 0.77466 0.84065 0.78337 1.21285 1.21706 1.21269 1.22580 0.97463 0.82597 1.01841 0.92175 0.91348 0.91792 0.90687 0.90440 0.80001 0.90862 0.89280 0.89515 0.81136 0.88392 0.90808 0.87815 0.92906 0.95429 0.94847 0.77780 0.93477 0.90154 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.36 37.16 0.31 -0.84 16 2 C -0.11 -1.02 1.87 -91.78 -0.17 -1.19 16 3 H 0.10 0.93 7.06 -51.93 -0.37 0.57 16 4 C -0.02 -0.17 4.47 -27.88 -0.12 -0.30 16 5 C -0.23 -2.11 4.83 -105.05 -0.51 -2.62 16 6 C 0.05 0.55 11.96 -17.37 -0.21 0.34 16 7 N -0.30 -3.37 12.58 30.62 0.39 -2.99 16 8 N -0.38 -3.30 4.01 -68.16 -0.27 -3.58 16 9 C 0.10 0.47 11.47 59.85 0.69 1.16 16 10 C 0.06 0.45 10.22 -17.22 -0.18 0.27 16 11 C 0.52 6.54 6.99 -10.99 -0.08 6.46 16 12 O -0.55 -8.36 15.48 5.55 0.09 -8.28 16 13 N -0.61 -7.60 3.03 -172.53 -0.52 -8.12 16 14 C 0.08 0.94 6.62 -3.75 -0.02 0.91 16 15 C 0.05 0.63 6.97 37.10 0.26 0.89 16 16 O -0.36 -6.25 10.14 -35.23 -0.36 -6.61 16 17 C 0.07 1.16 2.86 -26.58 -0.08 1.08 16 18 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 19 C 0.16 3.20 5.95 -4.05 -0.02 3.17 16 20 N -0.73 -18.60 5.50 -59.91 -0.33 -18.93 16 21 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 25 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 C 0.08 0.96 4.40 -3.53 -0.02 0.94 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.50 6.85 -51.93 -0.36 0.15 16 32 H 0.06 0.52 6.12 -51.93 -0.32 0.20 16 33 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.10 1.19 7.07 -51.93 -0.37 0.83 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.39 10.68 7.55 -40.82 -0.31 10.37 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 49 H 0.10 0.99 5.28 -51.93 -0.27 0.72 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -36.08 395.03 -7.62 -43.70 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.87 Total: 6.32 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.39 Total: 2.88 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.02 Total: -61.43 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.27 Total: -14.89 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.08 -7.62 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733745782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.162 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds