Wall clock time and date at job start Tue Mar 31 2020 20:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47077 * 2 1 4 4 C 1.52995 * 109.47438 * 120.00393 * 2 1 3 5 5 C 1.50706 * 109.47200 * 295.00200 * 4 2 1 6 6 C 1.39869 * 126.03844 * 269.69440 * 5 4 2 7 7 N 1.30837 * 108.20496 * 179.81153 * 6 5 4 8 8 N 1.40083 * 108.20001 * 0.44021 * 7 6 5 9 9 C 1.46507 * 126.03617 * 179.74069 * 8 7 6 10 10 C 1.34950 * 107.93149 * 359.71584 * 8 7 6 11 11 C 1.50700 * 109.47179 * 240.00422 * 2 1 3 12 12 O 1.21287 * 119.99825 * 248.12600 * 11 2 1 13 13 N 1.34775 * 120.00232 * 68.12937 * 11 2 1 14 14 C 1.47151 * 120.98356 * 183.25180 * 13 11 2 15 15 C 1.52879 * 108.60784 * 230.49608 * 14 13 11 16 16 O 1.42959 * 109.30061 * 307.93536 * 15 14 13 17 17 C 1.42966 * 114.16583 * 62.44727 * 16 15 14 18 18 H 1.08991 * 109.55374 * 57.36923 * 17 16 15 19 19 C 1.52995 * 109.51241 * 177.49806 * 17 16 15 20 20 N 1.46493 * 109.47125 * 299.74538 * 19 17 16 21 21 C 1.36941 * 120.00100 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99917 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00097 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99919 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00212 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46891 * 60.00125 * 25 23 21 27 27 H 1.48498 * 109.47537 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47318 * 300.00584 * 25 23 21 29 29 C 1.47150 * 120.98103 * 3.52877 * 13 11 2 30 30 H 1.08996 * 109.46856 * 186.73873 * 1 2 3 31 31 H 1.08997 * 109.47374 * 306.73657 * 1 2 3 32 32 H 1.09003 * 109.46854 * 66.74015 * 1 2 3 33 33 H 1.09005 * 109.47186 * 54.99699 * 4 2 1 34 34 H 1.08997 * 109.47504 * 175.00161 * 4 2 1 35 35 H 1.07997 * 125.89807 * 359.97438 * 6 5 4 36 36 H 1.08996 * 109.46830 * 269.96764 * 9 8 7 37 37 H 1.09001 * 109.47225 * 29.96823 * 9 8 7 38 38 H 1.09000 * 109.47225 * 149.97148 * 9 8 7 39 39 H 1.07991 * 126.13121 * 180.02562 * 10 8 7 40 40 H 1.09002 * 109.68234 * 350.27686 * 14 13 11 41 41 H 1.09003 * 109.68571 * 110.82854 * 14 13 11 42 42 H 1.08997 * 109.58451 * 187.91823 * 15 14 13 43 43 H 1.09008 * 109.40504 * 67.84182 * 15 14 13 44 44 H 1.09000 * 109.47238 * 59.74403 * 19 17 16 45 45 H 1.09007 * 109.47195 * 179.74321 * 19 17 16 46 46 H 0.97000 * 120.00402 * 359.97438 * 20 19 17 47 47 H 0.97007 * 120.00156 * 179.97438 * 24 23 21 48 48 H 1.09001 * 109.68022 * 249.16890 * 29 13 11 49 49 H 1.08996 * 109.68047 * 9.68381 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 0.0569 2.4766 6 6 2.3927 1.0625 3.0934 7 7 1.7181 1.5027 4.1244 8 7 0.5188 0.7830 4.2022 9 6 -0.5262 0.9562 5.2143 10 6 0.4958 -0.0977 3.1800 11 6 2.0323 -0.7103 -1.2305 12 8 2.6034 -1.7751 -1.1253 13 7 1.8470 -0.1623 -2.4478 14 6 2.2651 -0.8697 -3.6686 15 6 3.1047 0.0822 -4.5207 16 8 2.3880 1.3049 -4.7087 17 6 2.1213 2.0189 -3.4992 18 1 3.0594 2.2314 -2.9866 19 6 1.4094 3.3327 -3.8277 20 7 2.2655 4.1492 -4.6916 21 6 1.8351 5.3771 -5.1187 22 1 0.8647 5.7437 -4.8182 23 6 2.6466 6.1510 -5.9369 24 7 3.8294 5.7045 -6.3027 25 14 2.0592 7.8256 -6.5201 26 1 1.8001 8.6960 -5.3451 27 1 3.1030 8.4463 -7.3747 28 1 0.8077 7.6661 -7.3034 29 6 1.2262 1.1636 -2.5951 30 1 -0.3633 -1.0205 0.1206 31 1 -0.3634 0.6147 0.8235 32 1 -0.3633 0.4058 -0.9442 33 1 1.6054 -1.7199 1.2950 34 1 3.1263 -0.7995 1.2055 35 1 3.3612 1.4165 2.7724 36 1 -0.3263 0.2976 6.0594 37 1 -0.5344 1.9917 5.5546 38 1 -1.4956 0.7083 4.7818 39 1 -0.2953 -0.7999 2.9622 40 1 2.8601 -1.7430 -3.4013 41 1 1.3854 -1.1825 -4.2312 42 1 3.3050 -0.3750 -5.4896 43 1 4.0472 0.2871 -4.0129 44 1 0.4723 3.1194 -4.3418 45 1 1.2024 3.8744 -2.9047 46 1 3.1373 3.8202 -4.9612 47 1 4.3963 6.2451 -6.8748 48 1 0.2402 1.0591 -3.0477 49 1 1.1330 1.6359 -1.6172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733745782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:48 Heat of formation + Delta-G solvation = -9.702617 kcal Electronic energy + Delta-G solvation = -29402.624423 eV Core-core repulsion = 25366.157135 eV Total energy + Delta-G solvation = -4036.467288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19223 -41.49644 -39.62413 -36.58879 -36.22546 -35.72285 -33.98799 -33.74317 -31.95050 -31.10287 -29.35937 -28.57672 -27.17127 -26.52548 -25.15175 -24.63604 -23.04372 -22.13957 -21.88151 -20.98953 -19.91082 -19.19938 -18.40304 -17.73631 -17.44303 -17.10415 -16.72817 -16.52697 -16.25105 -16.03227 -15.77803 -15.36722 -15.32214 -15.14163 -14.93854 -14.37716 -14.32795 -14.07189 -13.96663 -13.79374 -13.54154 -13.35212 -13.17157 -13.11651 -12.93906 -12.81117 -12.73722 -12.61917 -12.28181 -12.11616 -12.04812 -11.99955 -11.84727 -11.55293 -11.40638 -11.13956 -10.91063 -10.68619 -10.32095 -9.60261 -9.25033 -8.96860 -7.90951 -5.20061 0.99651 1.49374 1.53118 1.56396 1.59033 1.71100 1.77550 1.96508 2.58955 2.77253 3.38840 3.43093 3.58392 3.72721 3.89440 3.97203 3.99261 4.04300 4.10568 4.15568 4.18623 4.31407 4.37269 4.40892 4.47265 4.50566 4.55342 4.60887 4.66797 4.68664 4.73531 4.73696 4.85964 4.90358 4.95617 4.99392 5.01648 5.14403 5.23610 5.25441 5.36269 5.40318 5.51496 5.73176 6.20128 6.24524 6.29065 6.31593 6.77940 7.08480 7.36511 8.12600 8.35241 9.32719 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.002623 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.255529 B =10673.474470 C =12519.098693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.100 0.900 4 C -0.008 4.008 5 C -0.245 4.245 6 C 0.040 3.960 7 N -0.338 5.338 8 N -0.382 5.382 9 C 0.092 3.908 10 C 0.068 3.932 11 C 0.521 3.479 12 O -0.576 6.576 13 N -0.614 5.614 14 C 0.081 3.919 15 C 0.046 3.954 16 O -0.387 6.387 17 C 0.077 3.923 18 H 0.050 0.950 19 C 0.160 3.840 20 N -0.742 5.742 21 C -0.244 4.244 22 H 0.081 0.919 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.976 3.024 26 H -0.275 1.275 27 H -0.298 1.298 28 H -0.277 1.277 29 C 0.091 3.909 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.188 0.812 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.205 0.795 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.044 0.956 44 H 0.031 0.969 45 H 0.053 0.947 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.094 0.906 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.388 -16.575 20.673 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.118 0.882 4 C -0.048 4.048 5 C -0.256 4.256 6 C -0.145 4.145 7 N -0.160 5.160 8 N -0.164 5.164 9 C -0.048 4.048 10 C -0.078 4.078 11 C 0.312 3.688 12 O -0.456 6.456 13 N -0.347 5.347 14 C -0.042 4.042 15 C -0.031 4.031 16 O -0.306 6.306 17 C 0.018 3.982 18 H 0.068 0.932 19 C 0.033 3.967 20 N -0.385 5.385 21 C -0.375 4.375 22 H 0.099 0.901 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.804 3.196 26 H -0.201 1.201 27 H -0.224 1.224 28 H -0.203 1.203 29 C -0.032 4.032 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.205 0.795 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.221 0.779 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.137 0.863 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.070 0.930 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.112 0.888 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.437 -16.092 21.668 29.313 hybrid contribution 0.788 0.280 -1.247 1.501 sum -10.649 -15.812 20.421 27.936 Atomic orbital electron populations 1.21839 0.91010 1.03365 1.03426 1.21329 0.99183 1.00622 0.91015 0.88196 1.19506 1.00498 0.96966 0.87781 1.20033 0.97418 1.05159 1.03002 1.24096 1.00647 0.96383 0.93366 1.77323 0.95590 1.20407 1.22719 1.48814 1.15826 1.28149 1.23572 1.22176 0.88002 1.04545 0.90035 1.22817 1.00110 0.95710 0.89212 1.21237 0.77657 0.85127 0.84810 1.90657 1.43947 1.24351 1.86607 1.48231 1.60972 1.19281 1.06177 1.22206 1.00505 0.96041 0.85409 1.22991 0.93709 0.84764 1.01684 1.88109 1.76348 1.35445 1.30722 1.22644 0.97861 0.91696 0.85959 0.93175 1.20825 0.93319 0.88232 0.94303 1.42439 1.19354 1.17819 1.58881 1.19643 1.00712 0.93950 1.23242 0.90126 1.25615 0.96972 1.02857 1.01670 1.69841 1.11383 1.39478 1.41525 0.85181 0.76829 0.79652 0.77906 1.20108 1.22445 1.20335 1.22486 0.96726 0.81890 1.02070 0.91463 0.90275 0.91649 0.90616 0.92022 0.79540 0.89731 0.89562 0.86575 0.77874 0.88375 0.89542 0.86252 0.93761 0.95104 0.92968 0.79465 0.94135 0.88770 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.36 71.98 0.60 -1.17 16 2 C -0.10 -1.74 1.87 -11.54 -0.02 -1.76 16 3 H 0.10 1.72 7.06 -2.39 -0.02 1.70 16 4 C -0.01 -0.15 4.47 29.85 0.13 -0.01 16 5 C -0.24 -4.11 4.83 -20.14 -0.10 -4.20 16 6 C 0.04 0.80 11.96 85.24 1.02 1.82 16 7 N -0.34 -7.47 12.58 -57.03 -0.72 -8.19 16 8 N -0.38 -5.91 4.01 -369.56 -1.48 -7.39 16 9 C 0.09 0.63 11.47 127.77 1.47 2.10 16 10 C 0.07 0.89 10.22 83.54 0.85 1.75 16 11 C 0.52 12.33 6.99 87.66 0.61 12.94 16 12 O -0.58 -17.24 15.48 -3.05 -0.05 -17.29 16 13 N -0.61 -14.26 3.03 -818.15 -2.48 -16.73 16 14 C 0.08 1.88 6.62 86.21 0.57 2.45 16 15 C 0.05 1.23 6.97 71.94 0.50 1.73 16 16 O -0.39 -13.50 10.14 -148.98 -1.51 -15.02 16 17 C 0.08 2.43 2.86 30.69 0.09 2.52 16 18 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 19 C 0.16 6.08 5.95 86.38 0.51 6.60 16 20 N -0.74 -38.19 5.50 -343.46 -1.89 -40.08 16 21 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 22 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 25 Si 0.98 46.30 29.55 68.60 2.03 48.32 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 29 C 0.09 2.03 4.40 86.36 0.38 2.41 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.87 6.85 -2.39 -0.02 0.86 16 32 H 0.06 0.83 6.12 -2.39 -0.01 0.82 16 33 H 0.08 1.30 8.13 -2.38 -0.02 1.28 16 34 H 0.06 1.26 8.07 -2.39 -0.02 1.24 16 35 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.20 1.15 8.06 -2.92 -0.02 1.13 16 40 H 0.10 2.31 7.07 -2.39 -0.02 2.29 16 41 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.37 21.06 7.55 -92.71 -0.70 20.36 16 47 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 48 H 0.09 1.90 8.10 -2.39 -0.02 1.88 16 49 H 0.12 2.10 5.28 -2.39 -0.01 2.09 16 Total: -1.00 -78.59 395.03 2.37 -76.22 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.25 Total: 30.35 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 7.93 Total: 10.25 kcal Atomic # 7 Polarization: -126.56 SS G_CDS: -6.28 Total: -132.84 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.56 Total: -32.30 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -78.59 2.37 -76.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733745782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.516 kcal (2) G-P(sol) polarization free energy of solvation -78.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds