Wall clock time and date at job start Tue Mar 31 2020 20:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47409 * 2 1 4 4 C 1.52999 * 109.47469 * 239.99320 * 2 1 3 5 5 C 1.50702 * 109.46585 * 65.00344 * 4 2 1 6 6 C 1.39871 * 126.04367 * 90.02533 * 5 4 2 7 7 N 1.30834 * 108.20590 * 179.97438 * 6 5 4 8 8 N 1.40081 * 108.20258 * 359.97438 * 7 6 5 9 9 C 1.46509 * 126.03656 * 179.97438 * 8 7 6 10 10 C 1.34950 * 107.93001 * 359.76214 * 8 7 6 11 11 C 1.50703 * 109.47207 * 119.99709 * 2 1 3 12 12 O 1.21283 * 120.00377 * 104.33976 * 11 2 1 13 13 N 1.34779 * 120.00009 * 284.34750 * 11 2 1 14 14 C 1.47151 * 120.98149 * 354.63734 * 13 11 2 15 15 C 1.53293 * 108.38899 * 230.55790 * 14 13 11 16 16 O 1.42963 * 109.22352 * 307.70198 * 15 14 13 17 17 C 1.42963 * 114.16620 * 62.58013 * 16 15 14 18 18 H 1.09001 * 109.55902 * 57.36325 * 17 16 15 19 19 C 1.52998 * 109.50900 * 177.49640 * 17 16 15 20 20 N 1.46497 * 109.47153 * 299.73838 * 19 17 16 21 21 C 1.36940 * 119.99779 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00131 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99493 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00120 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99606 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47374 * 0.02562 * 25 23 21 27 27 H 1.48509 * 109.47366 * 119.99882 * 25 23 21 28 28 H 1.48503 * 109.47264 * 239.99887 * 25 23 21 29 29 C 1.47157 * 120.98409 * 174.66707 * 13 11 2 30 30 H 1.08999 * 109.46679 * 53.49502 * 1 2 3 31 31 H 1.09009 * 109.46645 * 173.49368 * 1 2 3 32 32 H 1.09003 * 109.47053 * 293.49166 * 1 2 3 33 33 H 1.08997 * 109.47390 * 184.99878 * 4 2 1 34 34 H 1.08994 * 109.47424 * 305.00649 * 4 2 1 35 35 H 1.07997 * 125.89465 * 359.95465 * 6 5 4 36 36 H 1.08997 * 109.46713 * 89.97617 * 9 8 7 37 37 H 1.09001 * 109.47273 * 209.97561 * 9 8 7 38 38 H 1.09002 * 109.46696 * 329.98069 * 9 8 7 39 39 H 1.07997 * 126.13119 * 180.24085 * 10 8 7 40 40 H 1.09005 * 109.67742 * 110.83590 * 14 13 11 41 41 H 1.08998 * 109.71605 * 350.30604 * 14 13 11 42 42 H 1.09003 * 109.50648 * 67.62313 * 15 14 13 43 43 H 1.08998 * 109.51545 * 187.77523 * 15 14 13 44 44 H 1.08998 * 109.47416 * 59.74410 * 19 17 16 45 45 H 1.09007 * 109.46842 * 179.74664 * 19 17 16 46 46 H 0.96997 * 120.00020 * 0.02562 * 20 19 17 47 47 H 0.97003 * 120.00223 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.68083 * 249.16427 * 29 13 11 49 49 H 1.09003 * 109.67713 * 9.67785 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6415 0.0569 -2.4765 6 6 2.3904 1.0664 -3.0902 7 7 1.7186 1.5021 -4.1249 8 7 0.5195 0.7822 -4.2029 9 6 -0.5254 0.9552 -5.2152 10 6 0.4987 -0.1021 -3.1836 11 6 2.0324 -0.7104 1.2305 12 8 2.4798 -1.8342 1.1419 13 7 1.9843 -0.0969 2.4296 14 6 1.5557 1.3060 2.5461 15 6 2.6022 2.0646 3.3703 16 8 2.8315 1.3668 4.5968 17 6 3.3670 0.0517 4.4308 18 1 4.3014 0.1061 3.8720 19 6 3.6279 -0.5708 5.8038 20 7 4.5908 0.2532 6.5386 21 6 4.9793 -0.1091 7.8007 22 1 4.5763 -1.0025 8.2542 23 6 5.8913 0.6721 8.4972 24 7 6.3829 1.7606 7.9443 25 14 6.4219 0.1775 10.2186 26 1 5.7304 -1.0776 10.6083 27 1 7.8908 -0.0398 10.2406 28 1 6.0668 1.2565 11.1752 29 6 2.3596 -0.8099 3.6610 30 1 -0.3633 0.6114 -0.8261 31 1 -0.3633 -1.0212 -0.1165 32 1 -0.3633 0.4097 0.9425 33 1 3.1264 -0.7996 -1.2055 34 1 1.6055 -1.7199 -1.2950 35 1 3.3562 1.4245 -2.7656 36 1 -0.3246 0.2971 -6.0606 37 1 -1.4947 0.7062 -4.7832 38 1 -0.5341 1.9908 -5.5550 39 1 -0.2899 -0.8080 -2.9690 40 1 0.5887 1.3540 3.0470 41 1 1.4774 1.7502 1.5538 42 1 3.5335 2.1270 2.8073 43 1 2.2379 3.0691 3.5854 44 1 2.6935 -0.6232 6.3625 45 1 4.0320 -1.5752 5.6764 46 1 4.9525 1.0558 6.1314 47 1 7.0199 2.3067 8.4311 48 1 1.4736 -0.9750 4.2741 49 1 2.8136 -1.7677 3.4066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733745783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:53 Heat of formation + Delta-G solvation = 15.669045 kcal Electronic energy + Delta-G solvation = -29081.556923 eV Core-core repulsion = 25046.189834 eV Total energy + Delta-G solvation = -4035.367090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60163 -40.46345 -38.44782 -35.47332 -35.00146 -34.35321 -33.36696 -32.16444 -30.63194 -30.05868 -28.24859 -27.97147 -26.12869 -25.69122 -23.46679 -23.44893 -21.98313 -21.38679 -20.78657 -20.33756 -18.92258 -17.64214 -17.10326 -16.85108 -16.49997 -16.01826 -15.69943 -15.61856 -15.08174 -14.80557 -14.51652 -14.49484 -14.36303 -14.05960 -13.57612 -13.52754 -13.19978 -13.14792 -13.02383 -12.73841 -12.69022 -12.58105 -12.36676 -12.14374 -12.11769 -11.63983 -11.47759 -11.29252 -10.96971 -10.86486 -10.78625 -10.77815 -10.40927 -10.01992 -9.85109 -9.77853 -9.72938 -9.60440 -8.84051 -8.68776 -8.49191 -6.85625 -5.69972 -2.98407 1.53345 2.16455 2.42650 2.55199 2.85412 3.47723 3.52962 3.55476 3.97528 4.10962 4.28880 4.45935 4.60702 4.61794 4.67010 4.72948 4.77671 4.79594 4.83880 4.93568 5.09503 5.11353 5.15689 5.18878 5.22935 5.33993 5.43463 5.48456 5.53977 5.59330 5.62940 5.69630 5.74277 5.78505 5.92022 5.93389 5.99446 6.01020 6.30646 6.32674 6.36696 6.59454 6.64135 6.72892 7.29088 7.35631 7.49570 7.75376 8.08178 8.48205 9.60025 10.17662 10.53718 11.52918 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.030254 B = 0.001929 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.280974 B =14511.847328 C =14713.446245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.094 0.906 4 C -0.021 4.021 5 C -0.230 4.230 6 C 0.053 3.947 7 N -0.299 5.299 8 N -0.379 5.379 9 C 0.102 3.898 10 C 0.057 3.943 11 C 0.520 3.480 12 O -0.539 6.539 13 N -0.613 5.613 14 C 0.071 3.929 15 C 0.045 3.955 16 O -0.357 6.357 17 C 0.074 3.926 18 H 0.063 0.937 19 C 0.163 3.837 20 N -0.726 5.726 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.085 3.915 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.183 0.817 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.172 0.828 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.104 0.896 44 H 0.028 0.972 45 H 0.036 0.964 46 H 0.388 0.612 47 H 0.254 0.746 48 H 0.076 0.924 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.529 -0.879 -26.541 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 H 0.112 0.888 4 C -0.060 4.060 5 C -0.242 4.242 6 C -0.133 4.133 7 N -0.120 5.120 8 N -0.161 5.161 9 C -0.040 4.040 10 C -0.089 4.089 11 C 0.308 3.692 12 O -0.416 6.416 13 N -0.347 5.347 14 C -0.052 4.052 15 C -0.033 4.033 16 O -0.274 6.274 17 C 0.015 3.985 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.370 5.370 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.038 4.038 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.200 0.800 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.189 0.811 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.222 0.778 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.468 -0.664 -27.361 32.468 hybrid contribution 0.389 -0.447 1.235 1.370 sum -17.078 -1.111 -26.125 31.232 Atomic orbital electron populations 1.21767 0.92785 1.02719 1.02473 1.21312 0.97773 1.00832 0.92653 0.88775 1.19683 1.01503 0.97178 0.87645 1.20058 0.96816 1.04651 1.02663 1.23863 1.00148 0.96072 0.93202 1.77376 0.94050 1.19020 1.21540 1.48472 1.16026 1.28570 1.23068 1.21849 0.87762 1.04234 0.90130 1.22351 1.00106 0.96069 0.90337 1.20697 0.77854 0.86480 0.84160 1.90694 1.45807 1.19482 1.85640 1.48174 1.66737 1.12869 1.06936 1.22561 0.99198 0.81523 1.01926 1.22923 0.97353 0.96083 0.86966 1.88167 1.84043 1.27706 1.27532 1.22786 0.94602 0.82825 0.98281 0.91922 1.20629 0.93929 0.93736 0.88211 1.42219 1.49910 1.28960 1.15936 1.19283 1.19531 1.06594 0.91534 0.91089 1.24743 1.00150 0.97474 0.98684 1.69685 1.34512 1.16300 1.37524 0.86109 0.78048 0.77506 0.84474 1.20557 1.21929 1.21908 1.22333 0.99604 0.97186 0.84696 0.91477 0.92023 0.92172 0.90488 0.90424 0.80022 0.90819 0.89493 0.89305 0.81084 0.90468 0.88952 0.92823 0.87822 0.95417 0.94695 0.77835 0.93639 0.90551 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.54 37.16 0.32 -0.66 16 2 C -0.10 -0.90 1.87 -91.77 -0.17 -1.08 16 3 H 0.09 0.73 6.54 -51.93 -0.34 0.39 16 4 C -0.02 -0.19 4.51 -27.88 -0.13 -0.31 16 5 C -0.23 -1.89 4.82 -105.05 -0.51 -2.40 16 6 C 0.05 0.48 11.96 -17.37 -0.21 0.27 16 7 N -0.30 -3.04 12.58 30.62 0.39 -2.66 16 8 N -0.38 -2.92 4.01 -68.15 -0.27 -3.19 16 9 C 0.10 0.37 11.47 59.85 0.69 1.06 16 10 C 0.06 0.40 10.23 -17.22 -0.18 0.22 16 11 C 0.52 6.47 6.90 -10.98 -0.08 6.39 16 12 O -0.54 -8.62 15.56 5.55 0.09 -8.53 16 13 N -0.61 -7.59 3.02 -172.27 -0.52 -8.11 16 14 C 0.07 0.70 5.57 -3.54 -0.02 0.68 16 15 C 0.04 0.56 6.98 37.31 0.26 0.82 16 16 O -0.36 -6.25 10.14 -35.23 -0.36 -6.61 16 17 C 0.07 1.28 2.86 -26.58 -0.08 1.20 16 18 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 19 C 0.16 3.40 5.95 -4.04 -0.02 3.37 16 20 N -0.73 -19.15 5.50 -59.91 -0.33 -19.48 16 21 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 22 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 25 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 29 C 0.08 1.22 5.94 -3.53 -0.02 1.20 16 30 H 0.07 0.41 6.85 -51.93 -0.36 0.05 16 31 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.06 0.42 7.16 -51.93 -0.37 0.04 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.67 5.53 -51.93 -0.29 0.38 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.39 10.88 7.55 -40.82 -0.31 10.57 16 47 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.10 1.53 7.06 -51.93 -0.37 1.17 16 LS Contribution 396.58 15.07 5.98 5.98 Total: -1.00 -36.92 396.58 -7.63 -44.55 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.91 Total: 5.15 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -0.39 Total: 3.24 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.01 Total: -61.58 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.27 Total: -15.14 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.92 -7.63 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733745783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.219 kcal (2) G-P(sol) polarization free energy of solvation -36.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds