Wall clock time and date at job start Tue Mar 31 2020 20:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47409 * 2 1 4 4 C 1.52999 * 109.47469 * 239.99320 * 2 1 3 5 5 C 1.50702 * 109.46585 * 65.00344 * 4 2 1 6 6 C 1.39871 * 126.04367 * 90.02533 * 5 4 2 7 7 N 1.30834 * 108.20590 * 179.97438 * 6 5 4 8 8 N 1.40081 * 108.20258 * 359.97438 * 7 6 5 9 9 C 1.46509 * 126.03656 * 179.97438 * 8 7 6 10 10 C 1.34950 * 107.93001 * 359.76214 * 8 7 6 11 11 C 1.50703 * 109.47207 * 119.99709 * 2 1 3 12 12 O 1.21283 * 120.00377 * 104.33976 * 11 2 1 13 13 N 1.34779 * 120.00009 * 284.34750 * 11 2 1 14 14 C 1.47151 * 120.98149 * 354.63734 * 13 11 2 15 15 C 1.53293 * 108.38899 * 230.55790 * 14 13 11 16 16 O 1.42963 * 109.22352 * 307.70198 * 15 14 13 17 17 C 1.42963 * 114.16620 * 62.58013 * 16 15 14 18 18 H 1.09001 * 109.55902 * 57.36325 * 17 16 15 19 19 C 1.52998 * 109.50900 * 177.49640 * 17 16 15 20 20 N 1.46497 * 109.47153 * 299.73838 * 19 17 16 21 21 C 1.36940 * 119.99779 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00131 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99493 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00120 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99606 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47374 * 0.02562 * 25 23 21 27 27 H 1.48509 * 109.47366 * 119.99882 * 25 23 21 28 28 H 1.48503 * 109.47264 * 239.99887 * 25 23 21 29 29 C 1.47157 * 120.98409 * 174.66707 * 13 11 2 30 30 H 1.08999 * 109.46679 * 53.49502 * 1 2 3 31 31 H 1.09009 * 109.46645 * 173.49368 * 1 2 3 32 32 H 1.09003 * 109.47053 * 293.49166 * 1 2 3 33 33 H 1.08997 * 109.47390 * 184.99878 * 4 2 1 34 34 H 1.08994 * 109.47424 * 305.00649 * 4 2 1 35 35 H 1.07997 * 125.89465 * 359.95465 * 6 5 4 36 36 H 1.08997 * 109.46713 * 89.97617 * 9 8 7 37 37 H 1.09001 * 109.47273 * 209.97561 * 9 8 7 38 38 H 1.09002 * 109.46696 * 329.98069 * 9 8 7 39 39 H 1.07997 * 126.13119 * 180.24085 * 10 8 7 40 40 H 1.09005 * 109.67742 * 110.83590 * 14 13 11 41 41 H 1.08998 * 109.71605 * 350.30604 * 14 13 11 42 42 H 1.09003 * 109.50648 * 67.62313 * 15 14 13 43 43 H 1.08998 * 109.51545 * 187.77523 * 15 14 13 44 44 H 1.08998 * 109.47416 * 59.74410 * 19 17 16 45 45 H 1.09007 * 109.46842 * 179.74664 * 19 17 16 46 46 H 0.96997 * 120.00020 * 0.02562 * 20 19 17 47 47 H 0.97003 * 120.00223 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.68083 * 249.16427 * 29 13 11 49 49 H 1.09003 * 109.67713 * 9.67785 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6415 0.0569 -2.4765 6 6 2.3904 1.0664 -3.0902 7 7 1.7186 1.5021 -4.1249 8 7 0.5195 0.7822 -4.2029 9 6 -0.5254 0.9552 -5.2152 10 6 0.4987 -0.1021 -3.1836 11 6 2.0324 -0.7104 1.2305 12 8 2.4798 -1.8342 1.1419 13 7 1.9843 -0.0969 2.4296 14 6 1.5557 1.3060 2.5461 15 6 2.6022 2.0646 3.3703 16 8 2.8315 1.3668 4.5968 17 6 3.3670 0.0517 4.4308 18 1 4.3014 0.1061 3.8720 19 6 3.6279 -0.5708 5.8038 20 7 4.5908 0.2532 6.5386 21 6 4.9793 -0.1091 7.8007 22 1 4.5763 -1.0025 8.2542 23 6 5.8913 0.6721 8.4972 24 7 6.3829 1.7606 7.9443 25 14 6.4219 0.1775 10.2186 26 1 5.7304 -1.0776 10.6083 27 1 7.8908 -0.0398 10.2406 28 1 6.0668 1.2565 11.1752 29 6 2.3596 -0.8099 3.6610 30 1 -0.3633 0.6114 -0.8261 31 1 -0.3633 -1.0212 -0.1165 32 1 -0.3633 0.4097 0.9425 33 1 3.1264 -0.7996 -1.2055 34 1 1.6055 -1.7199 -1.2950 35 1 3.3562 1.4245 -2.7656 36 1 -0.3246 0.2971 -6.0606 37 1 -1.4947 0.7062 -4.7832 38 1 -0.5341 1.9908 -5.5550 39 1 -0.2899 -0.8080 -2.9690 40 1 0.5887 1.3540 3.0470 41 1 1.4774 1.7502 1.5538 42 1 3.5335 2.1270 2.8073 43 1 2.2379 3.0691 3.5854 44 1 2.6935 -0.6232 6.3625 45 1 4.0320 -1.5752 5.6764 46 1 4.9525 1.0558 6.1314 47 1 7.0199 2.3067 8.4311 48 1 1.4736 -0.9750 4.2741 49 1 2.8136 -1.7677 3.4066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733745783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:52 Heat of formation + Delta-G solvation = -10.466282 kcal Electronic energy + Delta-G solvation = -29082.690236 eV Core-core repulsion = 25046.189834 eV Total energy + Delta-G solvation = -4036.500403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.19225 -41.47007 -39.61987 -36.66691 -36.17283 -35.70290 -34.00434 -33.74987 -31.93111 -31.08764 -29.27999 -28.62715 -27.38884 -26.50411 -25.07716 -24.39635 -23.32586 -22.12209 -21.88940 -21.00671 -19.83200 -19.21948 -18.45474 -17.71654 -17.44199 -17.07422 -16.76346 -16.56026 -16.22175 -15.97991 -15.78257 -15.35382 -15.29923 -15.10385 -14.99702 -14.45047 -14.31316 -14.14789 -13.95729 -13.79352 -13.53572 -13.35150 -13.17398 -13.14915 -12.98217 -12.81694 -12.80824 -12.62742 -12.23687 -12.12162 -12.01860 -11.96281 -11.86147 -11.58398 -11.40414 -11.14730 -10.95832 -10.67019 -10.32255 -9.59313 -9.25413 -9.00195 -7.93550 -5.23060 0.98979 1.48160 1.49766 1.57655 1.60025 1.71246 1.76912 1.96397 2.57057 2.77284 3.40183 3.41224 3.59669 3.72087 3.91497 3.93557 4.00436 4.02239 4.09634 4.12449 4.17175 4.31922 4.37554 4.41735 4.47235 4.48729 4.54910 4.59764 4.67439 4.69896 4.73785 4.77089 4.87776 4.90088 4.94613 4.97897 5.01196 5.10087 5.23135 5.24983 5.34420 5.39470 5.49277 5.73288 6.19044 6.24496 6.28717 6.34566 6.77710 7.10755 7.34046 8.08226 8.33128 9.30397 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.030254 B = 0.001929 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.280974 B =14511.847328 C =14713.446245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 H 0.109 0.891 4 C -0.012 4.012 5 C -0.243 4.243 6 C 0.042 3.958 7 N -0.337 5.337 8 N -0.381 5.381 9 C 0.092 3.908 10 C 0.067 3.933 11 C 0.517 3.483 12 O -0.580 6.580 13 N -0.615 5.615 14 C 0.077 3.923 15 C 0.036 3.964 16 O -0.387 6.387 17 C 0.088 3.912 18 H 0.045 0.955 19 C 0.160 3.840 20 N -0.740 5.740 21 C -0.247 4.247 22 H 0.079 0.921 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.978 3.022 26 H -0.265 1.265 27 H -0.293 1.293 28 H -0.292 1.292 29 C 0.095 3.905 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.190 0.810 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.202 0.798 40 H 0.093 0.907 41 H 0.126 0.874 42 H 0.049 0.951 43 H 0.126 0.874 44 H 0.031 0.969 45 H 0.042 0.958 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.087 0.913 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.944 -0.986 -27.397 33.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 H 0.126 0.874 4 C -0.051 4.051 5 C -0.254 4.254 6 C -0.143 4.143 7 N -0.159 5.159 8 N -0.163 5.163 9 C -0.048 4.048 10 C -0.079 4.079 11 C 0.307 3.693 12 O -0.460 6.460 13 N -0.348 5.348 14 C -0.045 4.045 15 C -0.041 4.041 16 O -0.306 6.306 17 C 0.029 3.971 18 H 0.063 0.937 19 C 0.033 3.967 20 N -0.383 5.383 21 C -0.378 4.378 22 H 0.097 0.903 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.806 3.194 26 H -0.189 1.189 27 H -0.220 1.220 28 H -0.219 1.219 29 C -0.029 4.029 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.207 0.793 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.219 0.781 40 H 0.111 0.889 41 H 0.144 0.856 42 H 0.067 0.933 43 H 0.144 0.856 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.105 0.895 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.928 -0.775 -28.250 34.580 hybrid contribution 1.084 -0.417 1.406 1.823 sum -18.845 -1.191 -26.844 32.820 Atomic orbital electron populations 1.21751 0.90875 1.03125 1.03392 1.21330 0.99123 1.00765 0.90355 0.87358 1.19528 1.00385 0.97063 0.88169 1.19987 0.97576 1.04975 1.02910 1.24100 1.00640 0.96369 0.93192 1.77319 0.95547 1.20632 1.22426 1.48805 1.15822 1.28041 1.23625 1.22179 0.88001 1.04594 0.89992 1.22803 1.00188 0.95614 0.89342 1.21419 0.76870 0.86111 0.84893 1.90676 1.47614 1.21484 1.86210 1.48275 1.66438 1.13813 1.06244 1.22702 0.98644 0.79699 1.03453 1.23241 0.98224 0.97048 0.85630 1.88102 1.84122 1.27760 1.30637 1.22448 0.94906 0.83660 0.96117 0.93682 1.20781 0.92649 0.93563 0.89745 1.42410 1.50915 1.29140 1.15793 1.19722 1.19080 1.06553 0.92493 0.90348 1.25627 1.00728 0.97743 1.02874 1.69849 1.35421 1.17609 1.39155 0.85012 0.77329 0.77579 0.79438 1.18879 1.22002 1.21936 1.22048 0.99037 0.96216 0.85592 0.89948 0.92086 0.91632 0.92216 0.91005 0.79314 0.89926 0.86573 0.89370 0.78089 0.88906 0.85637 0.93287 0.85606 0.95104 0.94044 0.79313 0.94023 0.89527 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.54 71.98 0.61 -0.81 16 2 C -0.09 -1.44 1.87 -11.54 -0.02 -1.46 16 3 H 0.11 1.36 6.54 -2.39 -0.02 1.35 16 4 C -0.01 -0.20 4.51 29.85 0.13 -0.07 16 5 C -0.24 -3.61 4.82 -20.14 -0.10 -3.70 16 6 C 0.04 0.73 11.96 85.24 1.02 1.75 16 7 N -0.34 -6.55 12.58 -57.03 -0.72 -7.27 16 8 N -0.38 -5.06 4.01 -369.54 -1.48 -6.55 16 9 C 0.09 0.44 11.47 127.77 1.47 1.91 16 10 C 0.07 0.76 10.23 83.54 0.85 1.62 16 11 C 0.52 12.28 6.90 87.66 0.60 12.88 16 12 O -0.58 -18.55 15.56 -3.04 -0.05 -18.60 16 13 N -0.61 -14.35 3.02 -817.33 -2.47 -16.82 16 14 C 0.08 1.32 5.57 86.35 0.48 1.80 16 15 C 0.04 0.83 6.98 72.08 0.50 1.34 16 16 O -0.39 -13.52 10.14 -148.98 -1.51 -15.03 16 17 C 0.09 3.07 2.86 30.69 0.09 3.15 16 18 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 19 C 0.16 6.72 5.95 86.38 0.51 7.24 16 20 N -0.74 -39.81 5.50 -343.45 -1.89 -41.70 16 21 C -0.25 -14.31 9.99 84.03 0.84 -13.47 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 24 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 25 Si 0.98 47.25 29.55 68.60 2.03 49.28 16 26 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 29 C 0.09 2.69 5.94 86.35 0.51 3.21 16 30 H 0.08 0.67 6.85 -2.39 -0.02 0.65 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.66 7.16 -2.39 -0.02 0.64 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 35 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.08 0.26 8.14 -2.39 -0.02 0.25 16 37 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.20 0.91 8.06 -2.91 -0.02 0.88 16 40 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.13 1.34 5.53 -2.39 -0.01 1.32 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.38 21.72 7.55 -92.71 -0.70 21.02 16 47 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 48 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.09 2.78 7.06 -2.39 -0.02 2.76 16 Total: -1.00 -81.43 396.58 2.43 -79.00 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.25 Total: 27.42 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 7.98 Total: 11.23 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -6.27 Total: -133.30 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.56 Total: -33.63 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -81.43 2.43 -79.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733745783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.538 kcal (2) G-P(sol) polarization free energy of solvation -81.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds