Wall clock time and date at job start Tue Mar 31 2020 20:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47205 * 2 1 4 4 C 1.53000 * 109.47377 * 239.99528 * 2 1 3 5 5 C 1.50699 * 109.46947 * 65.00252 * 4 2 1 6 6 C 1.39876 * 126.03541 * 269.68884 * 5 4 2 7 7 N 1.30836 * 108.19743 * 179.81929 * 6 5 4 8 8 N 1.40081 * 108.20873 * 0.44010 * 7 6 5 9 9 C 1.46503 * 126.04139 * 179.73907 * 8 7 6 10 10 C 1.34947 * 107.92483 * 359.72008 * 8 7 6 11 11 C 1.50704 * 109.47097 * 119.99504 * 2 1 3 12 12 O 1.21278 * 120.00086 * 104.24759 * 11 2 1 13 13 N 1.34777 * 119.99701 * 284.25669 * 11 2 1 14 14 C 1.47231 * 121.02881 * 174.67616 * 13 11 2 15 15 C 1.53286 * 108.40678 * 129.45807 * 14 13 11 16 16 O 1.42962 * 109.22387 * 52.30485 * 15 14 13 17 17 C 1.42958 * 114.16678 * 297.41792 * 16 15 14 18 18 H 1.08999 * 109.51578 * 302.66068 * 17 16 15 19 19 C 1.53002 * 109.51530 * 182.50319 * 17 16 15 20 20 N 1.46495 * 109.46842 * 65.25528 * 19 17 16 21 21 C 1.36936 * 119.99927 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99949 * 0.02562 * 21 20 19 23 23 C 1.38819 * 120.00238 * 179.97438 * 21 20 19 24 24 N 1.31612 * 120.00030 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99844 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46751 * 89.99677 * 25 23 21 27 27 H 1.48494 * 109.46900 * 209.99694 * 25 23 21 28 28 H 1.48505 * 109.46910 * 329.99799 * 25 23 21 29 29 C 1.47149 * 120.98382 * 354.64448 * 13 11 2 30 30 H 1.09004 * 109.46899 * 53.50381 * 1 2 3 31 31 H 1.09003 * 109.46522 * 173.50123 * 1 2 3 32 32 H 1.08997 * 109.47409 * 293.49861 * 1 2 3 33 33 H 1.08996 * 109.46935 * 185.00252 * 4 2 1 34 34 H 1.09004 * 109.47007 * 305.00116 * 4 2 1 35 35 H 1.07993 * 125.90077 * 0.02562 * 6 5 4 36 36 H 1.08995 * 109.47156 * 269.97606 * 9 8 7 37 37 H 1.09005 * 109.46708 * 29.97527 * 9 8 7 38 38 H 1.08997 * 109.47408 * 149.97532 * 9 8 7 39 39 H 1.08006 * 126.13079 * 179.97438 * 10 8 7 40 40 H 1.09001 * 109.66834 * 9.72790 * 14 13 11 41 41 H 1.09003 * 109.70289 * 249.21107 * 14 13 11 42 42 H 1.09004 * 109.51321 * 292.37989 * 15 14 13 43 43 H 1.09005 * 109.55745 * 172.25464 * 15 14 13 44 44 H 1.09002 * 109.47250 * 185.25682 * 19 17 16 45 45 H 1.09003 * 109.46572 * 305.25642 * 19 17 16 46 46 H 0.97002 * 120.00110 * 359.97438 * 20 19 17 47 47 H 0.97000 * 120.00041 * 180.02562 * 24 23 21 48 48 H 1.09000 * 109.67836 * 110.80787 * 29 13 11 49 49 H 1.08994 * 109.68157 * 350.28746 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6415 0.0569 -2.4765 6 6 0.4601 -0.1072 -3.2072 7 7 0.4704 0.7474 -4.1979 8 7 1.6649 1.4764 -4.1348 9 6 2.0798 2.5330 -5.0609 10 6 2.3658 1.0337 -3.0700 11 6 2.0324 -0.7103 1.2306 12 8 2.4782 -1.8347 1.1422 13 7 1.9860 -0.0960 2.4293 14 6 2.3613 -0.8082 3.6620 15 6 3.3697 0.0532 4.4307 16 8 2.8356 1.3690 4.5956 17 6 2.6066 2.0657 3.3685 18 1 3.5378 2.1267 2.8052 19 6 2.0967 3.4766 3.6693 20 7 3.1448 4.2394 4.3517 21 6 2.9153 5.5373 4.7230 22 1 1.9615 5.9985 4.5132 23 6 3.9083 6.2601 5.3702 24 7 3.6878 7.5077 5.7267 25 14 5.5578 5.4623 5.7338 26 1 6.4805 5.6912 4.5930 27 1 6.1353 6.0586 6.9650 28 1 5.3686 4.0027 5.9323 29 6 1.5591 1.3074 2.5453 30 1 -0.3633 0.6113 -0.8262 31 1 -0.3632 -1.0211 -0.1163 32 1 -0.3634 0.4097 0.9424 33 1 3.1264 -0.7995 -1.2054 34 1 1.6055 -1.7199 -1.2950 35 1 -0.3263 -0.8145 -2.9892 36 1 2.6425 2.0938 -5.8846 37 1 1.1978 3.0397 -5.4527 38 1 2.7078 3.2516 -4.5344 39 1 3.3320 1.3942 -2.7490 40 1 2.8150 -1.7664 3.4086 41 1 1.4756 -0.9724 4.2758 42 1 4.3037 0.1069 3.8713 43 1 3.5564 -0.3892 5.4093 44 1 1.8340 3.9746 2.7360 45 1 1.2163 3.4159 4.3091 46 1 4.0011 3.8249 4.5411 47 1 4.3818 8.0128 6.1785 48 1 0.5924 1.3568 3.0465 49 1 1.4811 1.7506 1.5526 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733745784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:58 Heat of formation + Delta-G solvation = 18.150716 kcal Electronic energy + Delta-G solvation = -29521.925322 eV Core-core repulsion = 25486.665846 eV Total energy + Delta-G solvation = -4035.259476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53770 -40.55326 -38.59344 -35.50856 -35.04958 -34.66390 -33.21384 -32.22932 -30.88590 -30.41948 -28.42456 -27.72266 -26.14749 -25.80708 -24.23735 -22.80687 -21.79986 -21.32047 -21.02461 -20.28212 -18.95775 -17.82417 -17.56133 -16.78983 -16.68294 -16.10816 -15.70496 -15.59520 -15.16666 -14.79084 -14.63175 -14.53972 -14.32339 -14.18343 -13.72059 -13.38287 -13.25069 -13.13316 -12.98040 -12.80970 -12.68167 -12.58801 -12.34284 -12.29705 -12.22801 -11.88063 -11.47706 -11.28022 -11.20605 -11.06043 -10.88199 -10.76494 -10.51132 -10.17306 -10.02262 -9.78174 -9.66762 -9.59961 -8.92984 -8.65935 -8.58958 -7.25127 -5.77772 -3.13323 1.61211 2.24465 2.44543 2.49603 2.78453 3.38060 3.44079 3.45929 3.80624 4.15932 4.31567 4.54089 4.58832 4.60610 4.67264 4.76422 4.78796 4.80869 4.87200 4.99837 5.05392 5.05889 5.08149 5.16084 5.19986 5.32035 5.40298 5.50158 5.51931 5.53598 5.58676 5.60910 5.64725 5.70156 5.75683 5.86002 5.89271 5.93691 6.05994 6.23744 6.37656 6.38488 6.54175 6.71671 7.19115 7.29933 7.42283 7.96832 7.99516 8.40835 9.19924 9.92342 10.12096 11.40429 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.002907 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.786785 B = 9630.233341 C =11439.135084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.095 0.905 4 C -0.019 4.019 5 C -0.233 4.233 6 C 0.055 3.945 7 N -0.299 5.299 8 N -0.377 5.377 9 C 0.101 3.899 10 C 0.058 3.942 11 C 0.523 3.477 12 O -0.544 6.544 13 N -0.614 5.614 14 C 0.077 3.923 15 C 0.046 3.954 16 O -0.361 6.361 17 C 0.068 3.932 18 H 0.063 0.937 19 C 0.168 3.832 20 N -0.750 5.750 21 C -0.245 4.245 22 H 0.091 0.909 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.273 1.273 29 C 0.079 3.921 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.181 0.819 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.173 0.827 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.104 0.896 44 H 0.044 0.956 45 H 0.038 0.962 46 H 0.364 0.636 47 H 0.260 0.740 48 H 0.082 0.918 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 -17.483 -17.866 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.113 0.887 4 C -0.058 4.058 5 C -0.245 4.245 6 C -0.132 4.132 7 N -0.121 5.121 8 N -0.159 5.159 9 C -0.040 4.040 10 C -0.088 4.088 11 C 0.312 3.688 12 O -0.421 6.421 13 N -0.348 5.348 14 C -0.046 4.046 15 C -0.032 4.032 16 O -0.279 6.279 17 C 0.009 3.991 18 H 0.081 0.919 19 C 0.040 3.960 20 N -0.396 5.396 21 C -0.374 4.374 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.713 3.287 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.199 1.199 29 C -0.044 4.044 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.198 0.802 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.190 0.810 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.122 0.878 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.197 0.803 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.954 -17.201 -18.835 25.984 hybrid contribution 1.772 -0.702 0.891 2.104 sum -3.182 -17.903 -17.944 25.546 Atomic orbital electron populations 1.21769 0.92386 1.02868 1.02770 1.21357 0.98161 1.00772 0.92412 0.88734 1.19659 1.00980 0.97426 0.87737 1.20021 0.97444 1.04249 1.02778 1.23799 0.98210 0.98184 0.92961 1.77358 1.02267 1.09262 1.23191 1.48458 1.14627 1.30091 1.22735 1.21872 1.01684 0.88013 0.92472 1.22393 0.98886 0.97505 0.90014 1.20754 0.77518 0.86354 0.84209 1.90670 1.46196 1.19505 1.85744 1.48194 1.66926 1.12935 1.06749 1.22329 0.99693 0.97092 0.85451 1.22944 0.95181 0.84013 1.01073 1.88144 1.84117 1.26567 1.29101 1.22858 0.97268 0.93171 0.85824 0.91931 1.20603 0.92790 0.85986 0.96637 1.42578 1.13564 1.12098 1.71368 1.19040 1.00818 0.86236 1.31354 0.89156 1.24653 0.98024 0.95840 1.00493 1.69698 1.33945 1.08744 1.45799 0.86558 0.85259 0.79134 0.77786 1.21178 1.21709 1.19941 1.22525 0.99060 0.80531 1.02290 0.91058 0.91966 0.92145 0.90994 0.90197 0.80194 0.90819 0.89266 0.89290 0.80961 0.88331 0.90636 0.92948 0.87790 0.93872 0.94407 0.80281 0.93042 0.89936 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.55 37.16 0.32 -0.81 16 2 C -0.11 -0.97 1.87 -91.77 -0.17 -1.14 16 3 H 0.09 0.82 6.54 -51.93 -0.34 0.48 16 4 C -0.02 -0.17 4.51 -27.88 -0.13 -0.30 16 5 C -0.23 -2.07 4.78 -105.05 -0.50 -2.57 16 6 C 0.05 0.51 10.84 -17.36 -0.19 0.32 16 7 N -0.30 -3.24 12.58 30.62 0.39 -2.86 16 8 N -0.38 -3.37 4.01 -68.16 -0.27 -3.64 16 9 C 0.10 0.52 11.47 59.85 0.69 1.21 16 10 C 0.06 0.48 11.40 -17.22 -0.20 0.29 16 11 C 0.52 6.21 6.90 -10.98 -0.08 6.13 16 12 O -0.54 -8.03 15.57 5.56 0.09 -7.94 16 13 N -0.61 -7.12 3.02 -172.22 -0.52 -7.64 16 14 C 0.08 0.87 6.65 -3.49 -0.02 0.84 16 15 C 0.05 0.56 6.98 37.31 0.26 0.82 16 16 O -0.36 -5.80 10.33 -35.23 -0.36 -6.16 16 17 C 0.07 1.00 2.81 -26.57 -0.07 0.93 16 18 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 19 C 0.17 3.06 5.93 -4.04 -0.02 3.04 16 20 N -0.75 -17.75 5.36 -59.91 -0.32 -18.07 16 21 C -0.24 -6.89 10.47 -15.06 -0.16 -7.04 16 22 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.26 13.97 55.49 0.78 -28.48 16 25 Si 0.88 22.18 27.74 -169.99 -4.71 17.47 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.27 -6.59 6.52 56.52 0.37 -6.22 16 29 C 0.08 0.89 4.87 -3.53 -0.02 0.88 16 30 H 0.07 0.55 6.85 -51.93 -0.36 0.20 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.48 7.17 -51.93 -0.37 0.11 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.10 1.12 7.07 -51.93 -0.37 0.75 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.36 8.61 5.53 -40.82 -0.23 8.39 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.10 0.91 5.53 -51.93 -0.29 0.63 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -36.42 393.81 -7.28 -43.70 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.88 Total: 5.04 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.39 Total: 2.67 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.05 Total: -60.70 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.28 Total: -14.11 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.42 -7.28 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733745784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.847 kcal (2) G-P(sol) polarization free energy of solvation -36.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds