Wall clock time and date at job start Tue Mar 31 2020 20:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47205 * 2 1 4 4 C 1.53000 * 109.47377 * 239.99528 * 2 1 3 5 5 C 1.50699 * 109.46947 * 65.00252 * 4 2 1 6 6 C 1.39876 * 126.03541 * 269.68884 * 5 4 2 7 7 N 1.30836 * 108.19743 * 179.81929 * 6 5 4 8 8 N 1.40081 * 108.20873 * 0.44010 * 7 6 5 9 9 C 1.46503 * 126.04139 * 179.73907 * 8 7 6 10 10 C 1.34947 * 107.92483 * 359.72008 * 8 7 6 11 11 C 1.50704 * 109.47097 * 119.99504 * 2 1 3 12 12 O 1.21278 * 120.00086 * 104.24759 * 11 2 1 13 13 N 1.34777 * 119.99701 * 284.25669 * 11 2 1 14 14 C 1.47231 * 121.02881 * 174.67616 * 13 11 2 15 15 C 1.53286 * 108.40678 * 129.45807 * 14 13 11 16 16 O 1.42962 * 109.22387 * 52.30485 * 15 14 13 17 17 C 1.42958 * 114.16678 * 297.41792 * 16 15 14 18 18 H 1.08999 * 109.51578 * 302.66068 * 17 16 15 19 19 C 1.53002 * 109.51530 * 182.50319 * 17 16 15 20 20 N 1.46495 * 109.46842 * 65.25528 * 19 17 16 21 21 C 1.36936 * 119.99927 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99949 * 0.02562 * 21 20 19 23 23 C 1.38819 * 120.00238 * 179.97438 * 21 20 19 24 24 N 1.31612 * 120.00030 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99844 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46751 * 89.99677 * 25 23 21 27 27 H 1.48494 * 109.46900 * 209.99694 * 25 23 21 28 28 H 1.48505 * 109.46910 * 329.99799 * 25 23 21 29 29 C 1.47149 * 120.98382 * 354.64448 * 13 11 2 30 30 H 1.09004 * 109.46899 * 53.50381 * 1 2 3 31 31 H 1.09003 * 109.46522 * 173.50123 * 1 2 3 32 32 H 1.08997 * 109.47409 * 293.49861 * 1 2 3 33 33 H 1.08996 * 109.46935 * 185.00252 * 4 2 1 34 34 H 1.09004 * 109.47007 * 305.00116 * 4 2 1 35 35 H 1.07993 * 125.90077 * 0.02562 * 6 5 4 36 36 H 1.08995 * 109.47156 * 269.97606 * 9 8 7 37 37 H 1.09005 * 109.46708 * 29.97527 * 9 8 7 38 38 H 1.08997 * 109.47408 * 149.97532 * 9 8 7 39 39 H 1.08006 * 126.13079 * 179.97438 * 10 8 7 40 40 H 1.09001 * 109.66834 * 9.72790 * 14 13 11 41 41 H 1.09003 * 109.70289 * 249.21107 * 14 13 11 42 42 H 1.09004 * 109.51321 * 292.37989 * 15 14 13 43 43 H 1.09005 * 109.55745 * 172.25464 * 15 14 13 44 44 H 1.09002 * 109.47250 * 185.25682 * 19 17 16 45 45 H 1.09003 * 109.46572 * 305.25642 * 19 17 16 46 46 H 0.97002 * 120.00110 * 359.97438 * 20 19 17 47 47 H 0.97000 * 120.00041 * 180.02562 * 24 23 21 48 48 H 1.09000 * 109.67836 * 110.80787 * 29 13 11 49 49 H 1.08994 * 109.68157 * 350.28746 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6415 0.0569 -2.4765 6 6 0.4601 -0.1072 -3.2072 7 7 0.4704 0.7474 -4.1979 8 7 1.6649 1.4764 -4.1348 9 6 2.0798 2.5330 -5.0609 10 6 2.3658 1.0337 -3.0700 11 6 2.0324 -0.7103 1.2306 12 8 2.4782 -1.8347 1.1422 13 7 1.9860 -0.0960 2.4293 14 6 2.3613 -0.8082 3.6620 15 6 3.3697 0.0532 4.4307 16 8 2.8356 1.3690 4.5956 17 6 2.6066 2.0657 3.3685 18 1 3.5378 2.1267 2.8052 19 6 2.0967 3.4766 3.6693 20 7 3.1448 4.2394 4.3517 21 6 2.9153 5.5373 4.7230 22 1 1.9615 5.9985 4.5132 23 6 3.9083 6.2601 5.3702 24 7 3.6878 7.5077 5.7267 25 14 5.5578 5.4623 5.7338 26 1 6.4805 5.6912 4.5930 27 1 6.1353 6.0586 6.9650 28 1 5.3686 4.0027 5.9323 29 6 1.5591 1.3074 2.5453 30 1 -0.3633 0.6113 -0.8262 31 1 -0.3632 -1.0211 -0.1163 32 1 -0.3634 0.4097 0.9424 33 1 3.1264 -0.7995 -1.2054 34 1 1.6055 -1.7199 -1.2950 35 1 -0.3263 -0.8145 -2.9892 36 1 2.6425 2.0938 -5.8846 37 1 1.1978 3.0397 -5.4527 38 1 2.7078 3.2516 -4.5344 39 1 3.3320 1.3942 -2.7490 40 1 2.8150 -1.7664 3.4086 41 1 1.4756 -0.9724 4.2758 42 1 4.3037 0.1069 3.8713 43 1 3.5564 -0.3892 5.4093 44 1 1.8340 3.9746 2.7360 45 1 1.2163 3.4159 4.3091 46 1 4.0011 3.8249 4.5411 47 1 4.3818 8.0128 6.1785 48 1 0.5924 1.3568 3.0465 49 1 1.4811 1.7506 1.5526 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733745784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:57 Heat of formation + Delta-G solvation = -7.429589 kcal Electronic energy + Delta-G solvation = -29523.034567 eV Core-core repulsion = 25486.665846 eV Total energy + Delta-G solvation = -4036.368722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.18975 -41.48927 -39.66068 -36.75329 -36.21274 -35.75529 -34.01440 -33.73994 -32.26383 -31.33929 -29.50340 -28.32018 -27.27586 -26.73755 -25.14315 -24.31781 -23.02178 -22.24280 -21.92032 -20.96813 -19.84632 -19.72934 -18.51113 -17.75822 -17.44828 -17.13206 -16.59586 -16.57751 -16.25713 -16.14314 -15.81177 -15.40912 -15.38007 -15.04891 -14.79324 -14.60820 -14.38027 -14.17194 -13.98882 -13.78172 -13.66791 -13.55879 -13.28649 -13.09750 -13.02760 -12.86950 -12.85679 -12.63454 -12.33477 -12.13062 -12.02307 -11.94145 -11.82998 -11.60710 -11.43062 -11.16932 -10.98166 -10.68788 -10.32544 -9.61672 -9.28431 -9.25669 -8.01218 -5.33914 0.98941 1.39140 1.42184 1.50004 1.55704 1.69946 1.76810 1.96386 2.50044 2.72908 3.30941 3.35055 3.47767 3.73023 3.86486 3.91516 3.95690 4.01221 4.06790 4.12319 4.17578 4.24899 4.31261 4.36449 4.43756 4.45459 4.53179 4.59868 4.67077 4.71408 4.72261 4.73075 4.85582 4.90344 4.95286 4.97525 4.99710 5.11314 5.20529 5.26608 5.35940 5.39739 5.75237 5.76768 6.17047 6.19064 6.23933 6.29106 6.78202 7.08296 7.09367 7.85708 8.03643 9.20119 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.002907 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.786785 B = 9630.233341 C =11439.135084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 H 0.105 0.895 4 C -0.010 4.010 5 C -0.243 4.243 6 C 0.050 3.950 7 N -0.337 5.337 8 N -0.383 5.383 9 C 0.093 3.907 10 C 0.058 3.942 11 C 0.523 3.477 12 O -0.575 6.575 13 N -0.614 5.614 14 C 0.079 3.921 15 C 0.046 3.954 16 O -0.390 6.390 17 C 0.075 3.925 18 H 0.062 0.938 19 C 0.162 3.838 20 N -0.756 5.756 21 C -0.231 4.231 22 H 0.062 0.938 23 C -0.063 4.063 24 N -0.983 5.983 25 Si 0.952 3.048 26 H -0.276 1.276 27 H -0.297 1.297 28 H -0.257 1.257 29 C 0.089 3.911 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.195 0.805 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.197 0.803 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.121 0.879 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.365 0.635 47 H 0.258 0.742 48 H 0.091 0.909 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 -18.800 -18.709 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 H 0.123 0.877 4 C -0.049 4.049 5 C -0.254 4.254 6 C -0.135 4.135 7 N -0.159 5.159 8 N -0.165 5.165 9 C -0.047 4.047 10 C -0.089 4.089 11 C 0.313 3.687 12 O -0.455 6.455 13 N -0.347 5.347 14 C -0.043 4.043 15 C -0.032 4.032 16 O -0.309 6.309 17 C 0.016 3.984 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.401 5.401 21 C -0.362 4.362 22 H 0.080 0.920 23 C -0.254 4.254 24 N -0.634 5.634 25 Si 0.779 3.221 26 H -0.202 1.202 27 H -0.224 1.224 28 H -0.181 1.181 29 C -0.034 4.034 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.212 0.788 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.214 0.786 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.139 0.861 44 H 0.078 0.922 45 H 0.051 0.949 46 H 0.198 0.802 47 H 0.066 0.934 48 H 0.110 0.890 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.401 -18.557 -19.714 27.430 hybrid contribution 1.519 -0.306 1.119 1.912 sum -2.882 -18.863 -18.595 26.644 Atomic orbital electron populations 1.21736 0.91407 1.03052 1.03084 1.21364 0.98807 1.00810 0.91061 0.87694 1.19526 1.00464 0.97073 0.87817 1.20028 0.97635 1.04809 1.02959 1.24098 0.98772 0.98065 0.92602 1.77305 1.03798 1.10452 1.24304 1.48768 1.14140 1.30335 1.23233 1.22145 1.02139 0.87749 0.92686 1.22834 0.99508 0.97015 0.89516 1.21196 0.76763 0.86001 0.84755 1.90660 1.47651 1.20988 1.86163 1.48251 1.66643 1.12956 1.06883 1.22317 0.99851 0.96763 0.85414 1.23096 0.95114 0.82649 1.02296 1.88092 1.84607 1.28237 1.29926 1.22687 0.98158 0.91588 0.85950 0.91971 1.20800 0.91291 0.87830 0.96491 1.42620 1.14940 1.10897 1.71677 1.19060 0.99409 0.87962 1.29778 0.91956 1.25455 1.02164 0.96464 1.01345 1.69871 1.35278 1.10587 1.47669 0.85447 0.80421 0.78850 0.77345 1.20193 1.22386 1.18135 1.22457 0.98030 0.80016 1.02938 0.90593 0.91973 0.91847 0.91570 0.90970 0.78827 0.89722 0.89326 0.87177 0.78576 0.88406 0.89723 0.93135 0.86072 0.92152 0.94941 0.80159 0.93359 0.89041 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.55 71.98 0.62 -1.24 16 2 C -0.10 -1.59 1.87 -11.54 -0.02 -1.61 16 3 H 0.11 1.48 6.54 -2.39 -0.02 1.46 16 4 C -0.01 -0.16 4.51 29.85 0.13 -0.02 16 5 C -0.24 -3.91 4.78 -20.14 -0.10 -4.00 16 6 C 0.05 0.87 10.84 85.24 0.92 1.79 16 7 N -0.34 -6.98 12.58 -57.02 -0.72 -7.70 16 8 N -0.38 -6.23 4.01 -369.56 -1.48 -7.71 16 9 C 0.09 0.80 11.47 127.77 1.47 2.27 16 10 C 0.06 0.84 11.40 83.54 0.95 1.80 16 11 C 0.52 11.35 6.90 87.66 0.60 11.95 16 12 O -0.58 -16.21 15.57 -3.02 -0.05 -16.25 16 13 N -0.61 -12.75 3.02 -817.16 -2.47 -15.22 16 14 C 0.08 1.61 6.65 86.34 0.57 2.19 16 15 C 0.05 1.02 6.98 72.08 0.50 1.52 16 16 O -0.39 -11.68 10.33 -148.98 -1.54 -13.22 16 17 C 0.07 2.04 2.81 30.70 0.09 2.12 16 18 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 19 C 0.16 5.64 5.93 86.38 0.51 6.15 16 20 N -0.76 -34.73 5.36 -343.44 -1.84 -36.57 16 21 C -0.23 -13.01 10.47 84.04 0.88 -12.13 16 22 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 23 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 24 N -0.98 -62.70 13.97 21.65 0.30 -62.40 16 25 Si 0.95 45.62 27.74 68.60 1.90 47.52 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 28 H -0.26 -11.42 6.52 99.48 0.65 -10.77 16 29 C 0.09 1.74 4.87 86.36 0.42 2.16 16 30 H 0.08 1.01 6.85 -2.38 -0.02 0.99 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.84 7.17 -2.39 -0.02 0.82 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.29 8.08 -2.38 -0.02 1.27 16 35 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.20 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.10 2.05 7.07 -2.39 -0.02 2.03 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.37 16.52 5.53 -92.71 -0.51 16.01 16 47 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 48 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.12 1.82 5.53 -2.39 -0.01 1.80 16 Total: -1.00 -78.62 393.81 2.51 -76.11 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.38 Total: 25.71 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 8.02 Total: 9.72 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -6.21 Total: -129.60 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.59 Total: -29.47 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Total: -78.62 2.51 -76.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733745784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.685 kcal (2) G-P(sol) polarization free energy of solvation -78.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds